RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 AEBP2Q6ZN18 517 aaPredicted RBP25.83■■□□□ 1.73
SF3B1-209ENST00000479532 CHIC1Q5VXU3 224 aa24.25■■□□□ 1.47
SF3B1-209ENST00000479532 SENP3Q9H4L4 574 aaPredicted RBP22.24■■□□□ 1.15
SF3B1-209ENST00000479532 PHF23Q9BUL5 403 aaPredicted RBP21.85■■□□□ 1.09
SF3B1-209ENST00000479532 FOXD1Q16676 465 aa20.75■□□□□ 0.91
SF3B1-209ENST00000479532 POTEDQ86YR6 584 aa20.36■□□□□ 0.85
SF3B1-209ENST00000479532 MSH5O43196 834 aa19.75■□□□□ 0.75
SF3B1-209ENST00000479532 PIAS4Q8N2W9 510 aaPredicted RBP19.31■□□□□ 0.68
SF3B1-209ENST00000479532 PLPPR3Q6T4P5 718 aa18.88■□□□□ 0.61
SF3B1-209ENST00000479532 PPP6R1Q9UPN7 881 aa18.88■□□□□ 0.61
SF3B1-209ENST00000479532 ADRA2BP18089 450 aa18.84■□□□□ 0.61
SF3B1-209ENST00000479532 MAPK8IP2Q13387 824 aaPredicted RBP17.5■□□□□ 0.39
SF3B1-209ENST00000479532 DMRT2Q9Y5R5 561 aa17.49■□□□□ 0.39
SF3B1-209ENST00000479532 CACNB1Q02641 598 aaPredicted RBP17.42■□□□□ 0.38
SF3B1-209ENST00000479532 SCAF1Q9H7N4 1312 aaKnown RBP17.35■□□□□ 0.37
SF3B1-209ENST00000479532 DCAF8L1A6NGE4 600 aa16.98■□□□□ 0.31
SF3B1-209ENST00000479532 RNF39Q9H2S5 420 aa16.74■□□□□ 0.27
SF3B1-209ENST00000479532 HOXD11P31277 338 aaPredicted RBP16.56■□□□□ 0.24
SF3B1-209ENST00000479532 C1QBPQ07021 282 aaKnown RBP16.5■□□□□ 0.23
SF3B1-209ENST00000479532 PPP4R3CPQ6ZMV5 832 aa16.45■□□□□ 0.22
SF3B1-209ENST00000479532 CNKSR2Q8WXI2 1034 aa16.3■□□□□ 0.2
SF3B1-209ENST00000479532 RNF216Q9NWF9 866 aaPredicted RBP16.3■□□□□ 0.2
SF3B1-209ENST00000479532 DNAJC5BQ9UF47 199 aa16.11■□□□□ 0.17
SF3B1-209ENST00000479532 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.94■□□□□ 0.14
SF3B1-209ENST00000479532 POTEHQ6S545 545 aa15.86■□□□□ 0.13
SF3B1-209ENST00000479532 NCBP3Q53F19 620 aaKnown RBP15.7■□□□□ 0.1
SF3B1-209ENST00000479532 CAPN15O75808 1086 aa15.5■□□□□ 0.07
SF3B1-209ENST00000479532 DSG3P32926 999 aa15.46■□□□□ 0.07
SF3B1-209ENST00000479532 SPINK5Q9NQ38 1064 aaPredicted RBP15.39■□□□□ 0.05
SF3B1-209ENST00000479532 U3KPZ7 1027 aaPredicted RBP15.38■□□□□ 0.05
SF3B1-209ENST00000479532 NPM3O75607 178 aaKnown RBP15.35■□□□□ 0.05
SF3B1-209ENST00000479532 TRHP20396 242 aaPredicted RBP15.09■□□□□ 0.01
SF3B1-209ENST00000479532 ABCB7O75027 752 aa15.04■□□□□ -0
SF3B1-209ENST00000479532 APLP2Q06481 763 aa15.03■□□□□ -0
SF3B1-209ENST00000479532 ZNF219Q9P2Y4 722 aaPredicted RBP14.99□□□□□ -0.01
SF3B1-209ENST00000479532 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.84□□□□□ -0.03
SF3B1-209ENST00000479532 HNRNPUL2Q1KMD3 747 aaKnown RBP14.84□□□□□ -0.03
SF3B1-209ENST00000479532 RBM42Q9BTD8 480 aaKnown RBP14.84□□□□□ -0.03
SF3B1-209ENST00000479532 SLC4A2P04920 1241 aa14.8□□□□□ -0.04
SF3B1-209ENST00000479532 CHRDL2Q6WN34 429 aa14.75□□□□□ -0.05
SF3B1-209ENST00000479532 SAMD1Q6SPF0 538 aaPredicted RBP14.7□□□□□ -0.06
SF3B1-209ENST00000479532 SP7Q8TDD2 431 aaPredicted RBP14.56□□□□□ -0.08
SF3B1-209ENST00000479532 POLA2Q14181 598 aa14.5□□□□□ -0.09
SF3B1-209ENST00000479532 NISCHQ9Y2I1 1504 aa14.47□□□□□ -0.09
SF3B1-209ENST00000479532 KCNA4P22459 653 aa14.47□□□□□ -0.09
SF3B1-209ENST00000479532 AKT1S1Q96B36 256 aa14.33□□□□□ -0.12
SF3B1-209ENST00000479532 HAX1O00165 279 aa14.27□□□□□ -0.13
SF3B1-209ENST00000479532 MYCNP04198 464 aaPredicted RBP14.25□□□□□ -0.13
SF3B1-209ENST00000479532 PIP4P2Q8N4L2 257 aa14.24□□□□□ -0.13
SF3B1-209ENST00000479532 REM2Q8IYK8 340 aaPredicted RBP14.19□□□□□ -0.14
SF3B1-209ENST00000479532 ZBTB12Q9Y330 459 aaPredicted RBP14.17□□□□□ -0.14
SF3B1-209ENST00000479532 PITPNM1O00562 1244 aa14.02□□□□□ -0.17
SF3B1-209ENST00000479532 FXR2P51116 673 aaKnown RBP eCLIP14.01□□□□□ -0.172e-9■■□□□ 12.7
SF3B1-209ENST00000479532 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
SF3B1-209ENST00000479532 ATF5Q9Y2D1 282 aaPredicted RBP13.92□□□□□ -0.18
SF3B1-209ENST00000479532 EVX2Q03828 476 aa13.9□□□□□ -0.18
SF3B1-209ENST00000479532 FOXD4L1Q9NU39 408 aa13.73□□□□□ -0.21
SF3B1-209ENST00000479532 PRKAR2AP13861 404 aaKnown RBP13.71□□□□□ -0.21
SF3B1-209ENST00000479532 LHX8Q68G74 356 aa13.68□□□□□ -0.22
SF3B1-209ENST00000479532 CLEC11AQ9Y240 323 aa13.67□□□□□ -0.22
SF3B1-209ENST00000479532 SPDYE2BA6NHP3 402 aa13.64□□□□□ -0.23
SF3B1-209ENST00000479532 SPDYE6P0CI01 402 aa13.64□□□□□ -0.23
SF3B1-209ENST00000479532 SPDYE2Q495Y8 402 aa13.64□□□□□ -0.23
SF3B1-209ENST00000479532 GABBR2O75899 941 aa13.6□□□□□ -0.23
SF3B1-209ENST00000479532 C19orf67A6NJJ6 358 aa13.59□□□□□ -0.23
SF3B1-209ENST00000479532 SPDYE1Q8NFV5 336 aaPredicted RBP13.59□□□□□ -0.23
SF3B1-209ENST00000479532 SLC4A1APQ9BWU0 796 aaKnown RBP13.59□□□□□ -0.23
SF3B1-209ENST00000479532 FBLN2P98095 1184 aa13.56□□□□□ -0.24
SF3B1-209ENST00000479532 EHMT2Q96KQ7 1210 aa13.51□□□□□ -0.25
SF3B1-209ENST00000479532 PLSCR2Q9NRY7 297 aa13.45□□□□□ -0.26
SF3B1-209ENST00000479532 ZNF692Q9BU19 519 aaPredicted RBP13.43□□□□□ -0.26
SF3B1-209ENST00000479532 CHADLQ6NUI6 762 aa13.4□□□□□ -0.26
SF3B1-209ENST00000479532 ATXN8OSP0DMR3 200 aa13.38□□□□□ -0.27
SF3B1-209ENST00000479532 PRR29P0C7W0 189 aa13.33□□□□□ -0.28
SF3B1-209ENST00000479532 SSUH2Q9Y2M2 353 aa13.3□□□□□ -0.28
SF3B1-209ENST00000479532 POTEIP0CG38 1075 aa13.23□□□□□ -0.29
SF3B1-209ENST00000479532 CD44P16070 742 aaKnown RBP13.23□□□□□ -0.29
SF3B1-209ENST00000479532 ZBTB22O15209 634 aa13.22□□□□□ -0.29
SF3B1-209ENST00000479532 MKRN4PQ13434 485 aaPredicted RBP13.22□□□□□ -0.29
SF3B1-209ENST00000479532 DCBLD2Q96PD2 775 aa13.2□□□□□ -0.3
SF3B1-209ENST00000479532 CLCN6P51797 869 aa13.19□□□□□ -0.3
SF3B1-209ENST00000479532 PABPN1Q86U42 306 aaKnown RBP eCLIP13.17□□□□□ -0.31e-6■□□□□ 10.4
SF3B1-209ENST00000479532 CSRNP3Q8WYN3 585 aa13.13□□□□□ -0.31
SF3B1-209ENST00000479532 FARP1Q9Y4F1 1045 aaPredicted RBP13.13□□□□□ -0.31
SF3B1-209ENST00000479532 ZRANB1Q9UGI0 708 aa12.97□□□□□ -0.33
SF3B1-209ENST00000479532 ZNF579Q8NAF0 562 aaKnown RBP12.93□□□□□ -0.34
SF3B1-209ENST00000479532 POTEMA6NI47 508 aa12.91□□□□□ -0.34
SF3B1-209ENST00000479532 OTUD5Q96G74 571 aa12.91□□□□□ -0.34
SF3B1-209ENST00000479532 POTEGQ6S5H5 508 aa12.86□□□□□ -0.35
SF3B1-209ENST00000479532 CCDC180Q9P1Z9 1646 aa12.86□□□□□ -0.35
SF3B1-209ENST00000479532 GALR2O43603 387 aaPredicted RBP12.83□□□□□ -0.36
SF3B1-209ENST00000479532 POTEB2H3BUK9 544 aa12.79□□□□□ -0.36
SF3B1-209ENST00000479532 PAK3O75914 559 aaPredicted RBP12.78□□□□□ -0.36
SF3B1-209ENST00000479532 PCDH10Q9P2E7 1040 aa12.76□□□□□ -0.37
SF3B1-209ENST00000479532 CREBZFQ9NS37 354 aa12.72□□□□□ -0.37
SF3B1-209ENST00000479532 STAG3Q9UJ98 1225 aa12.71□□□□□ -0.37
SF3B1-209ENST00000479532 PHF12Q96QT6 1004 aa12.68□□□□□ -0.38
SF3B1-209ENST00000479532 PELP1Q8IZL8 1130 aaKnown RBP12.63□□□□□ -0.39
SF3B1-209ENST00000479532 MAMSTRQ6ZN01 415 aa12.61□□□□□ -0.39
SF3B1-209ENST00000479532 NPM1P06748 294 aaKnown RBP eCLIP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms