RNA–Protein interactions for RNA: ENST00000479197.1

RFK-204, Transcript of riboflavin kinase, human

TSL 1 (best)

Gene RFK, Length 1,501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFK-204	ENST00000479197	PHLDB1	Q86UU1	1377 aa		28.2	■■■□□ 2.11
RFK-204	ENST00000479197	ARHGAP5	Q13017	1502 aa		28.19	■■■□□ 2.1
RFK-204	ENST00000479197	NCOA2	Q15596	1464 aa		28.18	■■■□□ 2.1
RFK-204	ENST00000479197	CCNB3	Q8WWL7	1395 aa		28.17	■■■□□ 2.1
RFK-204	ENST00000479197	GPATCH8	Q9UKJ3	1502 aa	Known RBP	28.16	■■■□□ 2.1
RFK-204	ENST00000479197	COL17A1	Q9UMD9	1497 aa	Predicted RBP	28.16	■■■□□ 2.1
RFK-204	ENST00000479197	AKNA	Q7Z591	1439 aa		28.15	■■■□□ 2.1
RFK-204	ENST00000479197	EFCAB2	Q5VUJ9	269 aa		28.14	■■■□□ 2.1
RFK-204	ENST00000479197	ITSN2	Q9NZM3	1697 aa		28.14	■■■□□ 2.1
RFK-204	ENST00000479197	ADGRL1	O94910	1474 aa		28.08	■■■□□ 2.09
RFK-204	ENST00000479197	CFDP1	Q9UEE9	299 aa	Predicted RBP	28.06	■■■□□ 2.08
RFK-204	ENST00000479197	SAMD9L	Q8IVG5	1584 aa		28.03	■■■□□ 2.08
RFK-204	ENST00000479197	DENND4B	O75064	1496 aa	Predicted RBP	28.03	■■■□□ 2.08
RFK-204	ENST00000479197	RICTOR	Q6R327	1708 aa		28.02	■■■□□ 2.08
RFK-204	ENST00000479197	ABCC1	P33527	1531 aa		28.02	■■■□□ 2.08
RFK-204	ENST00000479197	SCAPER	Q9BY12	1400 aa		28.02	■■■□□ 2.08
RFK-204	ENST00000479197	FRMPD1	Q5SYB0	1578 aa		28.02	■■■□□ 2.08
RFK-204	ENST00000479197	ZNF777	Q9ULD5	760 aa	Predicted RBP	28	■■■□□ 2.07
RFK-204	ENST00000479197	RAPGEF3	O95398	923 aa		27.99	■■■□□ 2.07
RFK-204	ENST00000479197	MYOM3	Q5VTT5	1437 aa		27.98	■■■□□ 2.07
RFK-204	ENST00000479197	POGZ	Q7Z3K3	1410 aa		27.98	■■■□□ 2.07
RFK-204	ENST00000479197	PLEKHH2	Q8IVE3	1493 aa		27.95	■■■□□ 2.07
RFK-204	ENST00000479197	ARHGEF12	Q9NZN5	1544 aa		27.95	■■■□□ 2.06
RFK-204	ENST00000479197	SYCP2	Q9BX26	1530 aa		27.94	■■■□□ 2.06
RFK-204	ENST00000479197	ZNF518A	Q6AHZ1	1483 aa		27.93	■■■□□ 2.06
RFK-204	ENST00000479197	KIAA1107	Q9UPP5	1409 aa		27.93	■■■□□ 2.06
RFK-204	ENST00000479197	MIA2	Q96PC5	1412 aa		27.92	■■■□□ 2.06
RFK-204	ENST00000479197	ZMYM4	Q5VZL5	1548 aa		27.91	■■■□□ 2.06
RFK-204	ENST00000479197	CAMSAP2	Q08AD1	1489 aa		27.91	■■■□□ 2.06
RFK-204	ENST00000479197	ZNF644	Q9H582	1327 aa	Predicted RBP	27.91	■■■□□ 2.06
RFK-204	ENST00000479197	KDM5C	P41229	1560 aa		27.89	■■■□□ 2.06
RFK-204	ENST00000479197	PPARGC1B	Q86YN6	1023 aa	Known RBP	27.88	■■■□□ 2.05
RFK-204	ENST00000479197	TRAPPC8	Q9Y2L5	1435 aa		27.88	■■■□□ 2.05
RFK-204	ENST00000479197	HNRNPM	P52272	730 aa	Known RBP eCLIP	27.86	■■■□□ 2.05
RFK-204	ENST00000479197	AFAP1	Q8N556	730 aa		27.86	■■■□□ 2.05
RFK-204	ENST00000479197	FGD6	Q6ZV73	1430 aa		27.85	■■■□□ 2.05
RFK-204	ENST00000479197	PTPN23	Q9H3S7	1636 aa		27.83	■■■□□ 2.05
RFK-204	ENST00000479197	MAGI2	Q86UL8	1455 aa		27.83	■■■□□ 2.05
RFK-204	ENST00000479197	MBD5	Q9P267	1494 aa		27.83	■■■□□ 2.05
RFK-204	ENST00000479197	HECW2	Q9P2P5	1572 aa		27.82	■■■□□ 2.04
RFK-204	ENST00000479197	ARHGEF40	Q8TER5	1519 aa		27.81	■■■□□ 2.04
RFK-204	ENST00000479197	ZFYVE16	Q7Z3T8	1539 aa		27.81	■■■□□ 2.04
RFK-204	ENST00000479197	ARHGEF5	Q12774	1597 aa		27.78	■■■□□ 2.04
RFK-204	ENST00000479197	MLH3	Q9UHC1	1453 aa		27.78	■■■□□ 2.04
RFK-204	ENST00000479197	TCOF1	Q13428	1488 aa	Known RBP	27.77	■■■□□ 2.04
RFK-204	ENST00000479197	CCDC141	Q6ZP82	1450 aa		27.77	■■■□□ 2.04
RFK-204	ENST00000479197	YEATS2	Q9ULM3	1422 aa		27.76	■■■□□ 2.03
RFK-204	ENST00000479197	RSPH4A	Q5TD94	716 aa		27.74	■■■□□ 2.03
RFK-204	ENST00000479197	KIDINS220	Q9ULH0	1771 aa		27.74	■■■□□ 2.03
RFK-204	ENST00000479197	MYT1L	Q9UL68	1186 aa		27.73	■■■□□ 2.03
RFK-204	ENST00000479197	INO80	Q9ULG1	1556 aa	Predicted RBP	27.73	■■■□□ 2.03
RFK-204	ENST00000479197	SPAG9	O60271	1321 aa	Known RBP	27.72	■■■□□ 2.03
RFK-204	ENST00000479197	ATP7A	Q04656	1500 aa		27.71	■■■□□ 2.03
RFK-204	ENST00000479197	ABCA6	Q8N139	1617 aa		27.7	■■■□□ 2.03
RFK-204	ENST00000479197	DIP2C	Q9Y2E4	1556 aa		27.7	■■■□□ 2.02
RFK-204	ENST00000479197	ATP10A	O60312	1499 aa		27.67	■■■□□ 2.02
RFK-204	ENST00000479197	DNMT1	P26358	1616 aa	Known RBP	27.66	■■■□□ 2.02
RFK-204	ENST00000479197	CROCC2	H7BZ55	1655 aa		27.66	■■■□□ 2.02
RFK-204	ENST00000479197	RTEL1-TNFRSF6B	F6WH68	1400 aa		27.66	■■■□□ 2.02
RFK-204	ENST00000479197	FAM50A	Q14320	339 aa	Known RBP	27.65	■■■□□ 2.02
RFK-204	ENST00000479197	C9orf84	Q5VXU9	1444 aa		27.64	■■■□□ 2.02
RFK-204	ENST00000479197	MAST1	Q9Y2H9	1570 aa		27.63	■■■□□ 2.01
RFK-204	ENST00000479197	TSPY4	P0CV99	314 aa		27.63	■■■□□ 2.01
RFK-204	ENST00000479197	TSPY10	P0CW01	314 aa		27.63	■■■□□ 2.01
RFK-204	ENST00000479197	ABCC5	O15440	1437 aa		27.62	■■■□□ 2.01
RFK-204	ENST00000479197	DAPK1	P53355	1430 aa		27.62	■■■□□ 2.01
RFK-204	ENST00000479197	RERE	Q9P2R6	1566 aa		27.61	■■■□□ 2.01
RFK-204	ENST00000479197	SIGLEC1	Q9BZZ2	1709 aa		27.61	■■■□□ 2.01
RFK-204	ENST00000479197	SHANK2	Q9UPX8	1470 aa		27.6	■■■□□ 2.01
RFK-204	ENST00000479197	RRBP1	Q9P2E9	1410 aa	Known RBP	27.6	■■■□□ 2.01
RFK-204	ENST00000479197	ADGB	Q8N7X0	1667 aa		27.59	■■■□□ 2.01
RFK-204	ENST00000479197	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	27.58	■■■□□ 2.01
RFK-204	ENST00000479197	ARID4B	Q4LE39	1312 aa	Predicted RBP	27.55	■■■□□ 2
RFK-204	ENST00000479197	PLXNC1	O60486	1568 aa		27.54	■■■□□ 2
RFK-204	ENST00000479197	A2M	P01023	1474 aa		27.53	■■■□□ 2
RFK-204	ENST00000479197	BCORL1	Q5H9F3	1711 aa		27.51	■■□□□ 1.99
RFK-204	ENST00000479197	AGL	P35573	1532 aa		27.51	■■□□□ 1.99
RFK-204	ENST00000479197	DHX29	Q7Z478	1369 aa	Known RBP	27.45	■■□□□ 1.99
RFK-204	ENST00000479197	ADGRL2	O95490	1459 aa		27.45	■■□□□ 1.98
RFK-204	ENST00000479197	CHIC2	Q9UKJ5	165 aa		27.45	■■□□□ 1.98
RFK-204	ENST00000479197	ADAMTSL3	P82987	1691 aa		27.44	■■□□□ 1.98
RFK-204	ENST00000479197	KDM4F	A0A1W2PPD8	638 aa		27.44	■■□□□ 1.98
RFK-204	ENST00000479197	PTPRK	Q15262	1439 aa		27.44	■■□□□ 1.98
RFK-204	ENST00000479197	ANKRD30A	Q9BXX3	1397 aa		27.44	■■□□□ 1.98
RFK-204	ENST00000479197	KIF15	Q9NS87	1388 aa		27.42	■■□□□ 1.98
RFK-204	ENST00000479197	DUOX2	Q9NRD8	1548 aa		27.42	■■□□□ 1.98
RFK-204	ENST00000479197	NCOA1	Q15788	1441 aa		27.41	■■□□□ 1.98
RFK-204	ENST00000479197	ITGAE	P38570	1179 aa		27.41	■■□□□ 1.98
RFK-204	ENST00000479197	MLEC	Q14165	292 aa		27.41	■■□□□ 1.98
RFK-204	ENST00000479197	RRP7BP	Q9NSQ0	103 aa		27.39	■■□□□ 1.98
RFK-204	ENST00000479197	MADD	Q8WXG6	1647 aa		27.38	■■□□□ 1.97
RFK-204	ENST00000479197	EIF2AK4	Q9P2K8	1649 aa	Known RBP	27.37	■■□□□ 1.97
RFK-204	ENST00000479197	FER1L4	A9Z1Z3	1794 aa		27.37	■■□□□ 1.97
RFK-204	ENST00000479197	ROCK1	Q13464	1354 aa		27.36	■■□□□ 1.97
RFK-204	ENST00000479197	ERBIN	Q96RT1	1412 aa		27.33	■■□□□ 1.97
RFK-204	ENST00000479197	KIF3B	O15066	747 aa		27.32	■■□□□ 1.96
RFK-204	ENST00000479197	RIMS1	Q86UR5	1692 aa	Known RBP	27.31	■■□□□ 1.96
RFK-204	ENST00000479197	GGT6	Q6P531	493 aa		27.29	■■□□□ 1.96
RFK-204	ENST00000479197	RNF17	Q9BXT8	1623 aa	Known RBP	27.29	■■□□□ 1.96
RFK-204	ENST00000479197	ANKRD50	Q9ULJ7	1429 aa		27.25	■■□□□ 1.95

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms