RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 PREX2Q70Z35 1606 aa15.33■□□□□ 0.04
HDAC3-208ENST00000476739 EFCAB2Q5VUJ9 269 aa15.33■□□□□ 0.04
HDAC3-208ENST00000476739 GPATCH8Q9UKJ3 1502 aaKnown RBP15.33■□□□□ 0.04
HDAC3-208ENST00000476739 ADGRL1O94910 1474 aa15.32■□□□□ 0.04
HDAC3-208ENST00000476739 LRRC9Q6ZRR7 1453 aa15.32■□□□□ 0.04
HDAC3-208ENST00000476739 SCAPERQ9BY12 1400 aa15.31■□□□□ 0.04
HDAC3-208ENST00000476739 DENND4BO75064 1496 aaPredicted RBP15.31■□□□□ 0.04
HDAC3-208ENST00000476739 MAP3K1Q13233 1512 aa15.31■□□□□ 0.04
HDAC3-208ENST00000476739 RICTORQ6R327 1708 aa15.31■□□□□ 0.04
HDAC3-208ENST00000476739 CCNB3Q8WWL7 1395 aa15.29■□□□□ 0.04
HDAC3-208ENST00000476739 NCOA2Q15596 1464 aa15.28■□□□□ 0.04
HDAC3-208ENST00000476739 SUPT6HQ7KZ85 1726 aaKnown RBP15.28■□□□□ 0.04
HDAC3-208ENST00000476739 ARHGEF12Q9NZN5 1544 aa15.27■□□□□ 0.04
HDAC3-208ENST00000476739 ZNF777Q9ULD5 760 aaPredicted RBP15.27■□□□□ 0.04
HDAC3-208ENST00000476739 SAMD9LQ8IVG5 1584 aa15.27■□□□□ 0.03
HDAC3-208ENST00000476739 POGZQ7Z3K3 1410 aa15.26■□□□□ 0.03
HDAC3-208ENST00000476739 CFDP1Q9UEE9 299 aaPredicted RBP15.25■□□□□ 0.03
HDAC3-208ENST00000476739 ABCC1P33527 1531 aa15.25■□□□□ 0.03
HDAC3-208ENST00000476739 APLP2Q06481 763 aa15.24■□□□□ 0.03
HDAC3-208ENST00000476739 AFAP1Q8N556 730 aa15.24■□□□□ 0.03
HDAC3-208ENST00000476739 ZNF644Q9H582 1327 aaPredicted RBP15.23■□□□□ 0.03
HDAC3-208ENST00000476739 ITSN2Q9NZM3 1697 aa15.23■□□□□ 0.03
HDAC3-208ENST00000476739 TRAPPC8Q9Y2L5 1435 aa15.23■□□□□ 0.03
HDAC3-208ENST00000476739 ZMYM4Q5VZL5 1548 aa15.22■□□□□ 0.03
HDAC3-208ENST00000476739 YEATS2Q9ULM3 1422 aa15.22■□□□□ 0.03
HDAC3-208ENST00000476739 HNRNPMP52272 730 aaKnown RBP eCLIP15.21■□□□□ 0.03
HDAC3-208ENST00000476739 SYCP2Q9BX26 1530 aa15.21■□□□□ 0.03
HDAC3-208ENST00000476739 KDM5CP41229 1560 aa15.2■□□□□ 0.02
HDAC3-208ENST00000476739 KDM4FA0A1W2PPD8 638 aa15.2■□□□□ 0.02
HDAC3-208ENST00000476739 ZNF518AQ6AHZ1 1483 aa15.2■□□□□ 0.02
HDAC3-208ENST00000476739 ARHGEF40Q8TER5 1519 aa15.19■□□□□ 0.02
HDAC3-208ENST00000476739 ZFYVE16Q7Z3T8 1539 aa15.18■□□□□ 0.02
HDAC3-208ENST00000476739 SIGLEC1Q9BZZ2 1709 aa15.17■□□□□ 0.02
HDAC3-208ENST00000476739 KIAA1107Q9UPP5 1409 aa15.17■□□□□ 0.02
HDAC3-208ENST00000476739 MAGI2Q86UL8 1455 aa15.16■□□□□ 0.02
HDAC3-208ENST00000476739 HECW2Q9P2P5 1572 aa15.15■□□□□ 0.02
HDAC3-208ENST00000476739 CAMSAP2Q08AD1 1489 aa15.15■□□□□ 0.02
HDAC3-208ENST00000476739 MBD5Q9P267 1494 aa15.15■□□□□ 0.02
HDAC3-208ENST00000476739 MYOM3Q5VTT5 1437 aa15.15■□□□□ 0.02
HDAC3-208ENST00000476739 PLEKHH2Q8IVE3 1493 aa15.14■□□□□ 0.01
HDAC3-208ENST00000476739 PPARGC1BQ86YN6 1023 aaKnown RBP15.14■□□□□ 0.01
HDAC3-208ENST00000476739 MLH3Q9UHC1 1453 aa15.14■□□□□ 0.01
HDAC3-208ENST00000476739 MYT1LQ9UL68 1186 aa15.13■□□□□ 0.01
HDAC3-208ENST00000476739 KIDINS220Q9ULH0 1771 aa15.13■□□□□ 0.01
HDAC3-208ENST00000476739 ABCA6Q8N139 1617 aa15.13■□□□□ 0.01
HDAC3-208ENST00000476739 DIP2CQ9Y2E4 1556 aa15.12■□□□□ 0.01
HDAC3-208ENST00000476739 ATP10AO60312 1499 aa15.11■□□□□ 0.01
HDAC3-208ENST00000476739 MIA2Q96PC5 1412 aa15.1■□□□□ 0.01
HDAC3-208ENST00000476739 SPAG9O60271 1321 aaKnown RBP15.1■□□□□ 0.01
HDAC3-208ENST00000476739 ARID4BQ4LE39 1312 aaPredicted RBP15.1■□□□□ 0.01
HDAC3-208ENST00000476739 C9orf84Q5VXU9 1444 aa15.09■□□□□ 0.01
HDAC3-208ENST00000476739 INO80Q9ULG1 1556 aaPredicted RBP15.08■□□□□ 0
HDAC3-208ENST00000476739 ATP7AQ04656 1500 aa15.07■□□□□ 0
HDAC3-208ENST00000476739 PTPN23Q9H3S7 1636 aa15.07■□□□□ 0
HDAC3-208ENST00000476739 BCORL1Q5H9F3 1711 aa15.07■□□□□ 0
HDAC3-208ENST00000476739 FGD6Q6ZV73 1430 aa15.07■□□□□ 0
HDAC3-208ENST00000476739 CCDC141Q6ZP82 1450 aa15.07■□□□□ 0
HDAC3-208ENST00000476739 ARHGEF5Q12774 1597 aa15.07■□□□□ 0
HDAC3-208ENST00000476739 AEBP2Q6ZN18 517 aaPredicted RBP15.06■□□□□ 0
HDAC3-208ENST00000476739 ADAMTSL3P82987 1691 aa15.06■□□□□ 0
HDAC3-208ENST00000476739 MLECQ14165 292 aa15.05■□□□□ -0
HDAC3-208ENST00000476739 REREQ9P2R6 1566 aa15.04■□□□□ -0
HDAC3-208ENST00000476739 TCOF1Q13428 1488 aaKnown RBP15.04■□□□□ -0
HDAC3-208ENST00000476739 RSPH4AQ5TD94 716 aa15.03■□□□□ -0
HDAC3-208ENST00000476739 MADDQ8WXG6 1647 aa15.03■□□□□ -0
HDAC3-208ENST00000476739 RTEL1-TNFRSF6BF6WH68 1400 aa15.02■□□□□ -0
HDAC3-208ENST00000476739 ABCC5O15440 1437 aa15□□□□□ -0.01
HDAC3-208ENST00000476739 A2MP01023 1474 aa15□□□□□ -0.01
HDAC3-208ENST00000476739 ADGBQ8N7X0 1667 aa15□□□□□ -0.01
HDAC3-208ENST00000476739 PLXNC1O60486 1568 aa14.99□□□□□ -0.01
HDAC3-208ENST00000476739 AGLP35573 1532 aa14.99□□□□□ -0.01
HDAC3-208ENST00000476739 TSPY4P0CV99 314 aa14.99□□□□□ -0.01
HDAC3-208ENST00000476739 TSPY10P0CW01 314 aa14.99□□□□□ -0.01
HDAC3-208ENST00000476739 MAST1Q9Y2H9 1570 aa14.98□□□□□ -0.01
HDAC3-208ENST00000476739 RIMS1Q86UR5 1692 aaKnown RBP14.98□□□□□ -0.01
HDAC3-208ENST00000476739 FAM50AQ14320 339 aaKnown RBP14.98□□□□□ -0.01
HDAC3-208ENST00000476739 DNMT1P26358 1616 aaKnown RBP14.98□□□□□ -0.01
HDAC3-208ENST00000476739 DAPK1P53355 1430 aa14.98□□□□□ -0.01
HDAC3-208ENST00000476739 CROCC2H7BZ55 1655 aa14.97□□□□□ -0.01
HDAC3-208ENST00000476739 PTPRMP28827 1452 aa14.97□□□□□ -0.01
HDAC3-208ENST00000476739 FER1L4A9Z1Z3 1794 aa14.96□□□□□ -0.01
HDAC3-208ENST00000476739 DHX29Q7Z478 1369 aaKnown RBP14.96□□□□□ -0.02
HDAC3-208ENST00000476739 CHIC2Q9UKJ5 165 aa14.94□□□□□ -0.02
HDAC3-208ENST00000476739 SHANK2Q9UPX8 1470 aa14.94□□□□□ -0.02
HDAC3-208ENST00000476739 PLPPR3Q6T4P5 718 aa14.93□□□□□ -0.02
HDAC3-208ENST00000476739 PTPRKQ15262 1439 aa14.92□□□□□ -0.02
HDAC3-208ENST00000476739 GGT6Q6P531 493 aa14.91□□□□□ -0.02
HDAC3-208ENST00000476739 RRP7BPQ9NSQ0 103 aa14.91□□□□□ -0.02
HDAC3-208ENST00000476739 KIF3BO15066 747 aa14.9□□□□□ -0.02
HDAC3-208ENST00000476739 CEBPAP49715 358 aaPredicted RBP14.9□□□□□ -0.02
HDAC3-208ENST00000476739 KIF15Q9NS87 1388 aa14.89□□□□□ -0.03
HDAC3-208ENST00000476739 NCOA1Q15788 1441 aa14.88□□□□□ -0.03
HDAC3-208ENST00000476739 RRBP1Q9P2E9 1410 aaKnown RBP14.88□□□□□ -0.03
HDAC3-208ENST00000476739 ITGAEP38570 1179 aa14.87□□□□□ -0.03
HDAC3-208ENST00000476739 DUOX2Q9NRD8 1548 aa14.87□□□□□ -0.03
HDAC3-208ENST00000476739 ADGRL2O95490 1459 aa14.86□□□□□ -0.03
HDAC3-208ENST00000476739 CLTCQ00610 1675 aaKnown RBP14.86□□□□□ -0.03
HDAC3-208ENST00000476739 ANKRD30AQ9BXX3 1397 aa14.85□□□□□ -0.03
HDAC3-208ENST00000476739 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.85□□□□□ -0.03
HDAC3-208ENST00000476739 C3P01024 1663 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms