RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 NISCHQ9Y2I1 1504 aa23.56■■□□□ 1.36
HDAC3-208ENST00000476739 CCDC180Q9P1Z9 1646 aa20.89■□□□□ 0.93
HDAC3-208ENST00000476739 ABCC9O60706 1549 aa20.48■□□□□ 0.87
HDAC3-208ENST00000476739 DCAF8L2P0C7V8 631 aa19.7■□□□□ 0.74
HDAC3-208ENST00000476739 RB1CC1Q8TDY2 1594 aa19.64■□□□□ 0.73
HDAC3-208ENST00000476739 NACADO15069 1562 aa19.63■□□□□ 0.73
HDAC3-208ENST00000476739 ZCCHC6Q5VYS8 1495 aaKnown RBP19.63■□□□□ 0.73
HDAC3-208ENST00000476739 MYO15BQ96JP2 1530 aa19.51■□□□□ 0.71
HDAC3-208ENST00000476739 DCAF1Q9Y4B6 1507 aa19.45■□□□□ 0.7
HDAC3-208ENST00000476739 UNC13AQ9UPW8 1703 aa19.28■□□□□ 0.68
HDAC3-208ENST00000476739 PABPN1Q86U42 306 aaKnown RBP eCLIP19.17■□□□□ 0.66
HDAC3-208ENST00000476739 SCRIBQ14160 1630 aa19.13■□□□□ 0.65
HDAC3-208ENST00000476739 BICRAQ9NZM4 1560 aa19.12■□□□□ 0.65
HDAC3-208ENST00000476739 DNAJC5BQ9UF47 199 aa18.82■□□□□ 0.6
HDAC3-208ENST00000476739 SHROOM4Q9ULL8 1493 aa18.79■□□□□ 0.6
HDAC3-208ENST00000476739 EIF4G1Q04637 1599 aaKnown RBP18.58■□□□□ 0.56
HDAC3-208ENST00000476739 CC2D2AQ9P2K1 1620 aa18.51■□□□□ 0.55
HDAC3-208ENST00000476739 CECR2Q9BXF3 1484 aa18.4■□□□□ 0.54
HDAC3-208ENST00000476739 SMARCA4P51532 1647 aa18.27■□□□□ 0.52
HDAC3-208ENST00000476739 BAZ1AQ9NRL2 1556 aaPredicted RBP18.23■□□□□ 0.51
HDAC3-208ENST00000476739 MROH2BQ7Z745 1585 aa18.19■□□□□ 0.5
HDAC3-208ENST00000476739 ATAD2BQ9ULI0 1458 aa18.17■□□□□ 0.5
HDAC3-208ENST00000476739 NCAPD3P42695 1498 aa18.14■□□□□ 0.49
HDAC3-208ENST00000476739 SMARCA2P51531 1590 aa18.1■□□□□ 0.49
HDAC3-208ENST00000476739 PEG3Q9GZU2 1588 aa18.08■□□□□ 0.48
HDAC3-208ENST00000476739 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
HDAC3-208ENST00000476739 WIZO95785 1651 aa18.01■□□□□ 0.47
HDAC3-208ENST00000476739 BAZ1BQ9UIG0 1483 aaKnown RBP18.01■□□□□ 0.47
HDAC3-208ENST00000476739 RSF1Q96T23 1441 aaPredicted RBP17.98■□□□□ 0.47
HDAC3-208ENST00000476739 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.43
HDAC3-208ENST00000476739 NESP48681 1621 aa17.76■□□□□ 0.43
HDAC3-208ENST00000476739 LAMC3Q9Y6N6 1575 aa17.62■□□□□ 0.41
HDAC3-208ENST00000476739 CADPSQ9ULU8 1353 aa17.62■□□□□ 0.41
HDAC3-208ENST00000476739 CCDC88BA6NC98 1476 aa17.59■□□□□ 0.41
HDAC3-208ENST00000476739 ERCC6Q03468 1493 aa17.59■□□□□ 0.41
HDAC3-208ENST00000476739 SUPT5HO00267 1087 aaKnown RBP17.58■□□□□ 0.4
HDAC3-208ENST00000476739 CFTRP13569 1480 aa17.52■□□□□ 0.4
HDAC3-208ENST00000476739 KIF21AQ7Z4S6 1674 aa17.52■□□□□ 0.39
HDAC3-208ENST00000476739 PDS5BQ9NTI5 1447 aa17.5■□□□□ 0.39
HDAC3-208ENST00000476739 THOC2Q8NI27 1593 aaKnown RBP17.44■□□□□ 0.38
HDAC3-208ENST00000476739 FANCD2Q9BXW9 1451 aa17.42■□□□□ 0.38
HDAC3-208ENST00000476739 CUX2O14529 1486 aa17.37■□□□□ 0.37
HDAC3-208ENST00000476739 PRDM2Q13029 1718 aa17.37■□□□□ 0.37
HDAC3-208ENST00000476739 CEP164Q9UPV0 1460 aa17.37■□□□□ 0.37
HDAC3-208ENST00000476739 MRC2Q9UBG0 1479 aa17.35■□□□□ 0.37
HDAC3-208ENST00000476739 WDR62O43379 1518 aa17.3■□□□□ 0.36
HDAC3-208ENST00000476739 URB2Q14146 1524 aaKnown RBP17.26■□□□□ 0.35
HDAC3-208ENST00000476739 TOPBP1Q92547 1522 aa17.16■□□□□ 0.34
HDAC3-208ENST00000476739 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
HDAC3-208ENST00000476739 ABCC8Q09428 1581 aa17.08■□□□□ 0.32
HDAC3-208ENST00000476739 CUX1P39880 1505 aa17.06■□□□□ 0.32
HDAC3-208ENST00000476739 POLA1P09884 1462 aaPredicted RBP17.01■□□□□ 0.31
HDAC3-208ENST00000476739 IFT140Q96RY7 1462 aa17■□□□□ 0.31
HDAC3-208ENST00000476739 ZNF608Q9ULD9 1512 aaPredicted RBP16.99■□□□□ 0.31
HDAC3-208ENST00000476739 FGD5Q6ZNL6 1462 aa16.98■□□□□ 0.31
HDAC3-208ENST00000476739 RAD54L2Q9Y4B4 1467 aa16.98■□□□□ 0.31
HDAC3-208ENST00000476739 TARBP1Q13395 1621 aaKnown RBP16.96■□□□□ 0.31
HDAC3-208ENST00000476739 SOGA1O94964 1423 aa16.94■□□□□ 0.3
HDAC3-208ENST00000476739 WRNQ14191 1432 aaPredicted RBP eCLIP16.93■□□□□ 0.3
HDAC3-208ENST00000476739 SYNJ1O43426 1573 aa16.93■□□□□ 0.3
HDAC3-208ENST00000476739 TOP2BQ02880 1626 aa16.89■□□□□ 0.29
HDAC3-208ENST00000476739 AQRO60306 1485 aaKnown RBP eCLIP16.89■□□□□ 0.298e-7■■■■□ 24.3
HDAC3-208ENST00000476739 EIF4G3O43432 1585 aaKnown RBP16.89■□□□□ 0.29
HDAC3-208ENST00000476739 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
HDAC3-208ENST00000476739 TDRD9Q8NDG6 1382 aaKnown RBP16.87■□□□□ 0.29
HDAC3-208ENST00000476739 DNAJC5Q9H3Z4 198 aa16.84■□□□□ 0.29
HDAC3-208ENST00000476739 WDR97A6NE52 1622 aa16.84■□□□□ 0.29
HDAC3-208ENST00000476739 ABCA10Q8WWZ4 1543 aa16.8■□□□□ 0.28
HDAC3-208ENST00000476739 ABCA5Q8WWZ7 1642 aa16.74■□□□□ 0.27
HDAC3-208ENST00000476739 GAPVD1Q14C86 1478 aa16.73■□□□□ 0.27
HDAC3-208ENST00000476739 GRIN2BQ13224 1484 aa16.71■□□□□ 0.27
HDAC3-208ENST00000476739 SNAPC4Q5SXM2 1469 aa16.71■□□□□ 0.27
HDAC3-208ENST00000476739 PBRM1Q86U86 1689 aa16.71■□□□□ 0.27
HDAC3-208ENST00000476739 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
HDAC3-208ENST00000476739 CHD1O14646 1710 aa16.68■□□□□ 0.26
HDAC3-208ENST00000476739 FBLN2P98095 1184 aa16.66■□□□□ 0.26
HDAC3-208ENST00000476739 MAGI1Q96QZ7 1491 aaPredicted RBP16.65■□□□□ 0.26
HDAC3-208ENST00000476739 SYNJ2O15056 1496 aa16.61■□□□□ 0.25
HDAC3-208ENST00000476739 CHMP7Q8WUX9 453 aaPredicted RBP16.59■□□□□ 0.25
HDAC3-208ENST00000476739 ADAMTS12P58397 1594 aa16.57■□□□□ 0.24
HDAC3-208ENST00000476739 ERICH3Q5RHP9 1530 aa16.57■□□□□ 0.24
HDAC3-208ENST00000476739 TRIM41Q8WV44 630 aa16.56■□□□□ 0.24
HDAC3-208ENST00000476739 KIF27Q86VH2 1401 aa16.55■□□□□ 0.24
HDAC3-208ENST00000476739 FHAD1B1AJZ9 1412 aa16.53■□□□□ 0.24
HDAC3-208ENST00000476739 IGF1RP08069 1367 aa16.52■□□□□ 0.24
HDAC3-208ENST00000476739 RUSC2Q8N2Y8 1516 aa16.52■□□□□ 0.24
HDAC3-208ENST00000476739 GRIN2AQ12879 1464 aa16.51■□□□□ 0.23
HDAC3-208ENST00000476739 CLASP1Q7Z460 1538 aa16.49■□□□□ 0.23
HDAC3-208ENST00000476739 CEP170Q5SW79 1584 aa16.46■□□□□ 0.23
HDAC3-208ENST00000476739 RIMBP3CA6NJZ7 1639 aa16.45■□□□□ 0.22
HDAC3-208ENST00000476739 RIMBP3BA6NNM3 1639 aa16.45■□□□□ 0.22
HDAC3-208ENST00000476739 RIMBP3Q9UFD9 1639 aa16.45■□□□□ 0.22
HDAC3-208ENST00000476739 ARHGEF11O15085 1522 aa16.44■□□□□ 0.22
HDAC3-208ENST00000476739 NUP160Q12769 1436 aa16.44■□□□□ 0.22
HDAC3-208ENST00000476739 CHIC1Q5VXU3 224 aa16.43■□□□□ 0.22
HDAC3-208ENST00000476739 CUL7Q14999 1698 aa16.43■□□□□ 0.22
HDAC3-208ENST00000476739 CARMIL1Q5VZK9 1371 aa16.41■□□□□ 0.22
HDAC3-208ENST00000476739 ERCC6L2Q5T890 1561 aa16.33■□□□□ 0.2
HDAC3-208ENST00000476739 ARAP1Q96P48 1450 aa16.32■□□□□ 0.2
HDAC3-208ENST00000476739 SHROOM2Q13796 1616 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms