RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 ST18O60284 1047 aa12.83□□□□□ -0.36
PTCD3-211ENST00000476215 C2orf72A6NCS6 295 aa12.79□□□□□ -0.36
PTCD3-211ENST00000476215 POTEMA6NI47 508 aa12.77□□□□□ -0.37
PTCD3-211ENST00000476215 DOK7Q18PE1 504 aa12.77□□□□□ -0.37
PTCD3-211ENST00000476215 POTEGQ6S5H5 508 aa12.76□□□□□ -0.37
PTCD3-211ENST00000476215 TMC2Q8TDI7 906 aa12.73□□□□□ -0.37
PTCD3-211ENST00000476215 CRISPLD2Q9H0B8 497 aa12.73□□□□□ -0.37
PTCD3-211ENST00000476215 ZSWIM6Q9HCJ5 1215 aa12.73□□□□□ -0.37
PTCD3-211ENST00000476215 GPHNQ9NQX3 736 aaPredicted RBP12.73□□□□□ -0.37
PTCD3-211ENST00000476215 SLC34A2O95436 690 aa12.7□□□□□ -0.38
PTCD3-211ENST00000476215 HOXB1P14653 301 aaPredicted RBP12.7□□□□□ -0.38
PTCD3-211ENST00000476215 FOXK1P85037 733 aa12.7□□□□□ -0.38
PTCD3-211ENST00000476215 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.69□□□□□ -0.38
PTCD3-211ENST00000476215 RIMBP2O15034 1052 aa12.68□□□□□ -0.38
PTCD3-211ENST00000476215 NCKAP5LQ9HCH0 1330 aa12.66□□□□□ -0.38
PTCD3-211ENST00000476215 GPR153Q6NV75 609 aa12.66□□□□□ -0.38
PTCD3-211ENST00000476215 SPRYD3Q8NCJ5 442 aa12.66□□□□□ -0.38
PTCD3-211ENST00000476215 ZNF710Q8N1W2 664 aa12.65□□□□□ -0.38
PTCD3-211ENST00000476215 PCDH10Q9P2E7 1040 aa12.64□□□□□ -0.39
PTCD3-211ENST00000476215 SLC24A1O60721 1099 aa12.63□□□□□ -0.39
PTCD3-211ENST00000476215 DSG2Q14126 1118 aa12.63□□□□□ -0.39
PTCD3-211ENST00000476215 MFSD10Q14728 455 aa12.62□□□□□ -0.39
PTCD3-211ENST00000476215 PDE4AP27815 886 aa12.61□□□□□ -0.39
PTCD3-211ENST00000476215 CADPS2Q86UW7 1296 aa12.61□□□□□ -0.39
PTCD3-211ENST00000476215 PLPP6Q8IY26 295 aa12.6□□□□□ -0.39
PTCD3-211ENST00000476215 MARVELD3Q96A59 401 aa12.6□□□□□ -0.39
PTCD3-211ENST00000476215 EMP3P54852 163 aa12.59□□□□□ -0.39
PTCD3-211ENST00000476215 PTCD2Q8WV60 388 aaKnown RBP12.58□□□□□ -0.4
PTCD3-211ENST00000476215 PPP1R15BQ5SWA1 713 aa12.56□□□□□ -0.4
PTCD3-211ENST00000476215 PAXIP1Q6ZW49 1069 aaPredicted RBP12.56□□□□□ -0.4
PTCD3-211ENST00000476215 PCDHGA4Q9Y5G9 962 aa12.55□□□□□ -0.4
PTCD3-211ENST00000476215 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
PTCD3-211ENST00000476215 PLCB2Q00722 1185 aa12.54□□□□□ -0.4
PTCD3-211ENST00000476215 ARSIQ5FYB1 569 aa12.54□□□□□ -0.4
PTCD3-211ENST00000476215 POTEB3A0JP26 581 aa12.53□□□□□ -0.4
PTCD3-211ENST00000476215 POTEBQ6S5H4 581 aa12.53□□□□□ -0.4
PTCD3-211ENST00000476215 DDX27Q96GQ7 796 aaKnown RBP12.52□□□□□ -0.41
PTCD3-211ENST00000476215 LARP6Q9BRS8 491 aaKnown RBP12.52□□□□□ -0.41
PTCD3-211ENST00000476215 OXER1Q8TDS5 423 aa12.51□□□□□ -0.41
PTCD3-211ENST00000476215 HS3ST6Q96QI5 342 aa12.51□□□□□ -0.41
PTCD3-211ENST00000476215 CDAN1Q8IWY9 1227 aa12.5□□□□□ -0.41
PTCD3-211ENST00000476215 CFAP44Q96MT7 982 aa12.5□□□□□ -0.41
PTCD3-211ENST00000476215 KHSRPQ92945 711 aaKnown RBP eCLIP12.49□□□□□ -0.414e-9■■■□□ 19.1
PTCD3-211ENST00000476215 FAM205CA6NFA0 338 aa12.48□□□□□ -0.41
PTCD3-211ENST00000476215 ZNF316A6NFI3 1004 aaPredicted RBP12.46□□□□□ -0.41
PTCD3-211ENST00000476215 ERBB3P21860 1342 aa12.45□□□□□ -0.42
PTCD3-211ENST00000476215 CAMK2BQ13554 666 aa12.45□□□□□ -0.42
PTCD3-211ENST00000476215 NUDT7P0C024 238 aa12.44□□□□□ -0.42
PTCD3-211ENST00000476215 TBC1D12O60347 775 aa12.42□□□□□ -0.42
PTCD3-211ENST00000476215 VARS2Q5ST30 1063 aaKnown RBP12.41□□□□□ -0.42
PTCD3-211ENST00000476215 EMILIN3Q9NT22 766 aa12.4□□□□□ -0.42
PTCD3-211ENST00000476215 HAP1P54257 671 aaPredicted RBP12.39□□□□□ -0.43
PTCD3-211ENST00000476215 ZNF687Q8N1G0 1237 aa12.39□□□□□ -0.43
PTCD3-211ENST00000476215 KRTAP3-3Q9BYR6 98 aa12.39□□□□□ -0.43
PTCD3-211ENST00000476215 KRTAP3-2Q9BYR7 98 aa12.39□□□□□ -0.43
PTCD3-211ENST00000476215 LHX6Q9UPM6 363 aa12.39□□□□□ -0.43
PTCD3-211ENST00000476215 PSDA5PKW4 1024 aaPredicted RBP12.36□□□□□ -0.43
PTCD3-211ENST00000476215 ANO8Q9HCE9 1232 aaPredicted RBP12.36□□□□□ -0.43
PTCD3-211ENST00000476215 UPF1Q92900 1129 aaKnown RBP eCLIP12.35□□□□□ -0.43
PTCD3-211ENST00000476215 TSHZ2Q9NRE2 1034 aa12.33□□□□□ -0.44
PTCD3-211ENST00000476215 ARIH1Q9Y4X5 557 aaPredicted RBP12.31□□□□□ -0.44
PTCD3-211ENST00000476215 EVI5O60447 810 aa12.28□□□□□ -0.44
PTCD3-211ENST00000476215 PBX2P40425 430 aa12.28□□□□□ -0.44
PTCD3-211ENST00000476215 MAP3K9P80192 1104 aa12.27□□□□□ -0.45
PTCD3-211ENST00000476215 E2F4Q16254 413 aa12.26□□□□□ -0.45
PTCD3-211ENST00000476215 POTEEQ6S8J3 1075 aa12.26□□□□□ -0.45
PTCD3-211ENST00000476215 FOSBP53539 338 aa12.24□□□□□ -0.45
PTCD3-211ENST00000476215 JPH4Q96JJ6 628 aa12.24□□□□□ -0.45
PTCD3-211ENST00000476215 PPP4R3BQ5MIZ7 849 aa12.23□□□□□ -0.45
PTCD3-211ENST00000476215 WDR70Q9NW82 654 aa12.23□□□□□ -0.45
PTCD3-211ENST00000476215 DPYSL4O14531 572 aa12.22□□□□□ -0.45
PTCD3-211ENST00000476215 SPNS2Q8IVW8 549 aa12.22□□□□□ -0.45
PTCD3-211ENST00000476215 PDIA6Q15084 440 aa12.21□□□□□ -0.45
PTCD3-211ENST00000476215 PTGER2P43116 358 aa12.2□□□□□ -0.46
PTCD3-211ENST00000476215 ARHGAP33O14559 1287 aa12.18□□□□□ -0.46
PTCD3-211ENST00000476215 SPDYE16A6NNV3 312 aaPredicted RBP12.17□□□□□ -0.46
PTCD3-211ENST00000476215 LSM11P83369 360 aaKnown RBP eCLIP12.17□□□□□ -0.46
PTCD3-211ENST00000476215 ZNF454Q8N9F8 522 aa12.17□□□□□ -0.46
PTCD3-211ENST00000476215 BCL2L12Q9HB09 334 aa12.17□□□□□ -0.46
PTCD3-211ENST00000476215 VSIG10Q8N0Z9 540 aa12.16□□□□□ -0.46
PTCD3-211ENST00000476215 PHF14O94880 888 aa12.15□□□□□ -0.46
PTCD3-211ENST00000476215 PLSCR2Q9NRY7 297 aa12.15□□□□□ -0.46
PTCD3-211ENST00000476215 PCDHGA10Q9Y5H3 936 aa12.14□□□□□ -0.47
PTCD3-211ENST00000476215 ZDHHC16Q969W1 377 aa12.13□□□□□ -0.47
PTCD3-211ENST00000476215 MMRN1Q13201 1228 aa12.12□□□□□ -0.47
PTCD3-211ENST00000476215 AXIN2Q9Y2T1 843 aa12.12□□□□□ -0.47
PTCD3-211ENST00000476215 TK2O00142 265 aa12.11□□□□□ -0.47
PTCD3-211ENST00000476215 ARHGEF1Q92888 912 aaKnown RBP12.1□□□□□ -0.47
PTCD3-211ENST00000476215 FBXW7Q969H0 707 aa12.1□□□□□ -0.47
PTCD3-211ENST00000476215 EPAS1Q99814 870 aa12.1□□□□□ -0.47
PTCD3-211ENST00000476215 ADAM33Q9BZ11 813 aa12.1□□□□□ -0.47
PTCD3-211ENST00000476215 TYW1BQ6NUM6 668 aa12.09□□□□□ -0.47
PTCD3-211ENST00000476215 KCNV2Q8TDN2 545 aa12.09□□□□□ -0.47
PTCD3-211ENST00000476215 SLC4A5Q9BY07 1137 aa12.09□□□□□ -0.47
PTCD3-211ENST00000476215 KDM2AQ9Y2K7 1162 aa12.09□□□□□ -0.47
PTCD3-211ENST00000476215 PSEN2P49810 448 aa12.08□□□□□ -0.48
PTCD3-211ENST00000476215 DMRTA1Q5VZB9 504 aa12.08□□□□□ -0.48
PTCD3-211ENST00000476215 PTPREP23469 700 aa12.06□□□□□ -0.48
PTCD3-211ENST00000476215 KCNK17Q96T54 332 aa12.06□□□□□ -0.48
PTCD3-211ENST00000476215 P3H3Q8IVL6 736 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms