RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 AEBP2Q6ZN18 517 aaPredicted RBP28.26■■■□□ 2.11
PTCD3-211ENST00000476215 CHIC1Q5VXU3 224 aa27.34■■□□□ 1.97
PTCD3-211ENST00000476215 SENP3Q9H4L4 574 aaPredicted RBP24.04■■□□□ 1.44
PTCD3-211ENST00000476215 PHF23Q9BUL5 403 aaPredicted RBP24■■□□□ 1.43
PTCD3-211ENST00000476215 FOXD1Q16676 465 aa22.32■■□□□ 1.16
PTCD3-211ENST00000476215 PLPPR3Q6T4P5 718 aa22.03■■□□□ 1.12
PTCD3-211ENST00000476215 PPP6R1Q9UPN7 881 aa21.22■□□□□ 0.99
PTCD3-211ENST00000476215 ADRA2BP18089 450 aa21.14■□□□□ 0.97
PTCD3-211ENST00000476215 PIAS4Q8N2W9 510 aaPredicted RBP20.92■□□□□ 0.94
PTCD3-211ENST00000476215 MSH5O43196 834 aa20.72■□□□□ 0.91
PTCD3-211ENST00000476215 SCAF1Q9H7N4 1312 aaKnown RBP19.38■□□□□ 0.69
PTCD3-211ENST00000476215 POTEDQ86YR6 584 aa19.37■□□□□ 0.69
PTCD3-211ENST00000476215 PPP4R3CPQ6ZMV5 832 aa19.35■□□□□ 0.69
PTCD3-211ENST00000476215 MAPK8IP2Q13387 824 aaPredicted RBP19.26■□□□□ 0.67
PTCD3-211ENST00000476215 DMRT2Q9Y5R5 561 aa19.16■□□□□ 0.66
PTCD3-211ENST00000476215 CNKSR2Q8WXI2 1034 aa18.91■□□□□ 0.62
PTCD3-211ENST00000476215 NCBP3Q53F19 620 aaKnown RBP18.75■□□□□ 0.59
PTCD3-211ENST00000476215 HOXD11P31277 338 aaPredicted RBP18.69■□□□□ 0.58
PTCD3-211ENST00000476215 RNF216Q9NWF9 866 aaPredicted RBP18.65■□□□□ 0.58
PTCD3-211ENST00000476215 KCNA4P22459 653 aa18.54■□□□□ 0.56
PTCD3-211ENST00000476215 NPM3O75607 178 aaKnown RBP18.5■□□□□ 0.55
PTCD3-211ENST00000476215 DNAJC5BQ9UF47 199 aa18.25■□□□□ 0.51
PTCD3-211ENST00000476215 DCAF8L1A6NGE4 600 aa18.11■□□□□ 0.49
PTCD3-211ENST00000476215 RNF39Q9H2S5 420 aa17.75■□□□□ 0.43
PTCD3-211ENST00000476215 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.63■□□□□ 0.412e-6■□□□□ 8.6
PTCD3-211ENST00000476215 SLC4A1APQ9BWU0 796 aaKnown RBP17.58■□□□□ 0.4
PTCD3-211ENST00000476215 SLC4A2P04920 1241 aa17.57■□□□□ 0.4
PTCD3-211ENST00000476215 C1QBPQ07021 282 aaKnown RBP17.52■□□□□ 0.4
PTCD3-211ENST00000476215 U3KPZ7 1027 aaPredicted RBP17.42■□□□□ 0.38
PTCD3-211ENST00000476215 CACNB1Q02641 598 aaPredicted RBP17.37■□□□□ 0.37
PTCD3-211ENST00000476215 FOXD4L1Q9NU39 408 aa17.19■□□□□ 0.34
PTCD3-211ENST00000476215 MYCNP04198 464 aaPredicted RBP17.12■□□□□ 0.33
PTCD3-211ENST00000476215 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.1■□□□□ 0.33
PTCD3-211ENST00000476215 ZBTB22O15209 634 aa17.1■□□□□ 0.33
PTCD3-211ENST00000476215 HNRNPUL2Q1KMD3 747 aaKnown RBP17.1■□□□□ 0.33
PTCD3-211ENST00000476215 SAMD1Q6SPF0 538 aaPredicted RBP17.02■□□□□ 0.32
PTCD3-211ENST00000476215 APLP2Q06481 763 aa16.98■□□□□ 0.31
PTCD3-211ENST00000476215 SPINK5Q9NQ38 1064 aaPredicted RBP16.96■□□□□ 0.31
PTCD3-211ENST00000476215 CAPN15O75808 1086 aa16.85■□□□□ 0.29
PTCD3-211ENST00000476215 ZNF219Q9P2Y4 722 aaPredicted RBP16.79■□□□□ 0.28
PTCD3-211ENST00000476215 DSG3P32926 999 aa16.76■□□□□ 0.27
PTCD3-211ENST00000476215 CSRNP3Q8WYN3 585 aa16.74■□□□□ 0.27
PTCD3-211ENST00000476215 ATXN8OSP0DMR3 200 aa16.69■□□□□ 0.26
PTCD3-211ENST00000476215 TRHP20396 242 aaPredicted RBP16.68■□□□□ 0.26
PTCD3-211ENST00000476215 EHMT2Q96KQ7 1210 aa16.63■□□□□ 0.25
PTCD3-211ENST00000476215 ATF5Q9Y2D1 282 aaPredicted RBP16.63■□□□□ 0.25
PTCD3-211ENST00000476215 ABCB7O75027 752 aa16.49■□□□□ 0.23
PTCD3-211ENST00000476215 POLA2Q14181 598 aa16.4■□□□□ 0.22
PTCD3-211ENST00000476215 ZBTB12Q9Y330 459 aaPredicted RBP16.19■□□□□ 0.18
PTCD3-211ENST00000476215 RBM42Q9BTD8 480 aaKnown RBP15.98■□□□□ 0.15
PTCD3-211ENST00000476215 MKRN4PQ13434 485 aaPredicted RBP15.94■□□□□ 0.14
PTCD3-211ENST00000476215 FBLN2P98095 1184 aa15.93■□□□□ 0.14
PTCD3-211ENST00000476215 OSCARQ8IYS5 282 aa15.87■□□□□ 0.13
PTCD3-211ENST00000476215 SPDYE2BA6NHP3 402 aa15.73■□□□□ 0.11
PTCD3-211ENST00000476215 SPDYE6P0CI01 402 aa15.73■□□□□ 0.11
PTCD3-211ENST00000476215 SPDYE2Q495Y8 402 aa15.73■□□□□ 0.11
PTCD3-211ENST00000476215 AKT1S1Q96B36 256 aa15.73■□□□□ 0.11
PTCD3-211ENST00000476215 SSUH2Q9Y2M2 353 aa15.62■□□□□ 0.09
PTCD3-211ENST00000476215 REM2Q8IYK8 340 aaPredicted RBP15.54■□□□□ 0.08
PTCD3-211ENST00000476215 ZNF692Q9BU19 519 aaPredicted RBP15.53■□□□□ 0.08
PTCD3-211ENST00000476215 CHRDL2Q6WN34 429 aa15.4■□□□□ 0.06
PTCD3-211ENST00000476215 SPDYE4A6NLX3 237 aa15.37■□□□□ 0.05
PTCD3-211ENST00000476215 PITPNM1O00562 1244 aa15.36■□□□□ 0.05
PTCD3-211ENST00000476215 PABPN1Q86U42 306 aaKnown RBP eCLIP15.33■□□□□ 0.04
PTCD3-211ENST00000476215 SPDYE1Q8NFV5 336 aaPredicted RBP15.3■□□□□ 0.04
PTCD3-211ENST00000476215 PROM2Q8N271 834 aa15.26■□□□□ 0.03
PTCD3-211ENST00000476215 POTEHQ6S545 545 aa15.25■□□□□ 0.03
PTCD3-211ENST00000476215 FXR2P51116 673 aaKnown RBP eCLIP15.19■□□□□ 0.02
PTCD3-211ENST00000476215 PIP4P2Q8N4L2 257 aa15.15■□□□□ 0.02
PTCD3-211ENST00000476215 CLEC11AQ9Y240 323 aa15.12■□□□□ 0.01
PTCD3-211ENST00000476215 STAG3Q9UJ98 1225 aa15.07■□□□□ 0
PTCD3-211ENST00000476215 FKBP8Q14318 412 aa15.06■□□□□ 0
PTCD3-211ENST00000476215 PRR29P0C7W0 189 aa15.01□□□□□ -0.01
PTCD3-211ENST00000476215 PRKAR2AP13861 404 aaKnown RBP14.93□□□□□ -0.02
PTCD3-211ENST00000476215 CREBZFQ9NS37 354 aa14.83□□□□□ -0.04
PTCD3-211ENST00000476215 CHADLQ6NUI6 762 aa14.82□□□□□ -0.04
PTCD3-211ENST00000476215 FARP1Q9Y4F1 1045 aaPredicted RBP14.74□□□□□ -0.05
PTCD3-211ENST00000476215 C19orf67A6NJJ6 358 aa14.69□□□□□ -0.06
PTCD3-211ENST00000476215 MNX1P50219 401 aaPredicted RBP14.69□□□□□ -0.06
PTCD3-211ENST00000476215 FBXO3Q9UK99 471 aa14.67□□□□□ -0.06
PTCD3-211ENST00000476215 HAX1O00165 279 aa14.64□□□□□ -0.07
PTCD3-211ENST00000476215 EVX2Q03828 476 aa14.57□□□□□ -0.08
PTCD3-211ENST00000476215 MIER1Q8N108 512 aa14.55□□□□□ -0.08
PTCD3-211ENST00000476215 SP7Q8TDD2 431 aaPredicted RBP14.54□□□□□ -0.08
PTCD3-211ENST00000476215 NPM1P06748 294 aaKnown RBP eCLIP14.53□□□□□ -0.08
PTCD3-211ENST00000476215 PLEKHG5O94827 1062 aa14.51□□□□□ -0.09
PTCD3-211ENST00000476215 CD44P16070 742 aaKnown RBP14.49□□□□□ -0.09
PTCD3-211ENST00000476215 VASPP50552 380 aaPredicted RBP14.49□□□□□ -0.09
PTCD3-211ENST00000476215 PLCD3Q8N3E9 789 aa14.49□□□□□ -0.09
PTCD3-211ENST00000476215 ZBTB47Q9UFB7 747 aaPredicted RBP14.44□□□□□ -0.1
PTCD3-211ENST00000476215 ZNF579Q8NAF0 562 aaKnown RBP14.38□□□□□ -0.11
PTCD3-211ENST00000476215 CLCN6P51797 869 aa14.34□□□□□ -0.11
PTCD3-211ENST00000476215 NUBP1P53384 320 aa14.34□□□□□ -0.11
PTCD3-211ENST00000476215 ZRANB1Q9UGI0 708 aa14.33□□□□□ -0.12
PTCD3-211ENST00000476215 PAK3O75914 559 aaPredicted RBP14.32□□□□□ -0.12
PTCD3-211ENST00000476215 RASEFQ8IZ41 740 aa14.3□□□□□ -0.12
PTCD3-211ENST00000476215 GABBR2O75899 941 aa14.28□□□□□ -0.12
PTCD3-211ENST00000476215 IFNLR1Q8IU57 520 aaPredicted RBP14.27□□□□□ -0.13
PTCD3-211ENST00000476215 CCDC61Q9Y6R9 512 aa14.26□□□□□ -0.13
PTCD3-211ENST00000476215 TSPYL2Q9H2G4 693 aaPredicted RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms