RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-223ENST00000475146 MTUS2Q5JR59 1369 aa38.28■■■■□ 3.72
CPNE1-223ENST00000475146 PREX2Q70Z35 1606 aa38.25■■■■□ 3.71
CPNE1-223ENST00000475146 VPS8Q8N3P4 1428 aa38.24■■■■□ 3.71
CPNE1-223ENST00000475146 CDC42BPBQ9Y5S2 1711 aa38.23■■■■□ 3.71
CPNE1-223ENST00000475146 POGZQ7Z3K3 1410 aa38.22■■■■□ 3.71
CPNE1-223ENST00000475146 ZMYM4Q5VZL5 1548 aa38.19■■■■□ 3.7
CPNE1-223ENST00000475146 CDC42BPAQ5VT25 1732 aa38.18■■■■□ 3.7
CPNE1-223ENST00000475146 EHBP1L1Q8N3D4 1523 aa38.17■■■■□ 3.7
CPNE1-223ENST00000475146 ARHGEF40Q8TER5 1519 aa38.17■■■■□ 3.7
CPNE1-223ENST00000475146 ZFYVE16Q7Z3T8 1539 aa38.12■■■■□ 3.69
CPNE1-223ENST00000475146 GPATCH8Q9UKJ3 1502 aaKnown RBP38.11■■■■□ 3.69
CPNE1-223ENST00000475146 MAGI2Q86UL8 1455 aa38.09■■■■□ 3.69
CPNE1-223ENST00000475146 CCNB3Q8WWL7 1395 aa38.09■■■■□ 3.69
CPNE1-223ENST00000475146 ZNF518AQ6AHZ1 1483 aa38.09■■■■□ 3.69
CPNE1-223ENST00000475146 TIAM1Q13009 1591 aa38.08■■■■□ 3.69
CPNE1-223ENST00000475146 YEATS2Q9ULM3 1422 aa38.08■■■■□ 3.69
CPNE1-223ENST00000475146 ABCC1P33527 1531 aa38.07■■■■□ 3.69
CPNE1-223ENST00000475146 ZNF777Q9ULD5 760 aaPredicted RBP38.06■■■■□ 3.68
CPNE1-223ENST00000475146 ARID4BQ4LE39 1312 aaPredicted RBP38.05■■■■□ 3.68
CPNE1-223ENST00000475146 AFAP1Q8N556 730 aa38.02■■■■□ 3.68
CPNE1-223ENST00000475146 CFDP1Q9UEE9 299 aaPredicted RBP38.01■■■■□ 3.68
CPNE1-223ENST00000475146 ITSN2Q9NZM3 1697 aa38.01■■■■□ 3.67
CPNE1-223ENST00000475146 ARHGEF12Q9NZN5 1544 aa38■■■■□ 3.67
CPNE1-223ENST00000475146 KDM5CP41229 1560 aa38■■■■□ 3.67
CPNE1-223ENST00000475146 SAMD9LQ8IVG5 1584 aa37.99■■■■□ 3.67
CPNE1-223ENST00000475146 TRAPPC8Q9Y2L5 1435 aa37.97■■■■□ 3.67
CPNE1-223ENST00000475146 MYT1LQ9UL68 1186 aa37.97■■■■□ 3.67
CPNE1-223ENST00000475146 SUPT6HQ7KZ85 1726 aaKnown RBP37.96■■■■□ 3.67
CPNE1-223ENST00000475146 HECW2Q9P2P5 1572 aa37.94■■■■□ 3.66
CPNE1-223ENST00000475146 NCOA2Q15596 1464 aa37.93■■■■□ 3.66
CPNE1-223ENST00000475146 SYCP2Q9BX26 1530 aa37.92■■■■□ 3.66
CPNE1-223ENST00000475146 LRRC9Q6ZRR7 1453 aa37.92■■■■□ 3.66
CPNE1-223ENST00000475146 BCORL1Q5H9F3 1711 aa37.91■■■■□ 3.66
CPNE1-223ENST00000475146 MAP3K1Q13233 1512 aa37.9■■■■□ 3.66
CPNE1-223ENST00000475146 ATP10AO60312 1499 aa37.9■■■■□ 3.66
CPNE1-223ENST00000475146 PLEKHH2Q8IVE3 1493 aa37.9■■■■□ 3.66
CPNE1-223ENST00000475146 ADAMTSL3P82987 1691 aa37.88■■■■□ 3.66
CPNE1-223ENST00000475146 C9orf84Q5VXU9 1444 aa37.87■■■■□ 3.65
CPNE1-223ENST00000475146 MLH3Q9UHC1 1453 aa37.86■■■■□ 3.65
CPNE1-223ENST00000475146 SIGLEC1Q9BZZ2 1709 aa37.85■■■■□ 3.65
CPNE1-223ENST00000475146 HNRNPMP52272 730 aaKnown RBP eCLIP37.85■■■■□ 3.656e-8■■■■■ 27.5
CPNE1-223ENST00000475146 KIAA1107Q9UPP5 1409 aa37.85■■■■□ 3.65
CPNE1-223ENST00000475146 APLP2Q06481 763 aa37.83■■■■□ 3.65
CPNE1-223ENST00000475146 KANK4Q5T7N3 995 aaPredicted RBP37.82■■■■□ 3.64
CPNE1-223ENST00000475146 DIP2CQ9Y2E4 1556 aa37.81■■■■□ 3.64
CPNE1-223ENST00000475146 ABCA6Q8N139 1617 aa37.79■■■■□ 3.64
CPNE1-223ENST00000475146 MADDQ8WXG6 1647 aa37.79■■■■□ 3.64
CPNE1-223ENST00000475146 ZNF644Q9H582 1327 aaPredicted RBP37.79■■■■□ 3.64
CPNE1-223ENST00000475146 MLECQ14165 292 aa37.76■■■■□ 3.64
CPNE1-223ENST00000475146 SPAG9O60271 1321 aaKnown RBP37.75■■■■□ 3.63
CPNE1-223ENST00000475146 KIDINS220Q9ULH0 1771 aa37.75■■■■□ 3.63
CPNE1-223ENST00000475146 PTPRMP28827 1452 aa37.73■■■■□ 3.63
CPNE1-223ENST00000475146 REREQ9P2R6 1566 aa37.7■■■■□ 3.63
CPNE1-223ENST00000475146 CAMSAP2Q08AD1 1489 aa37.69■■■■□ 3.62
CPNE1-223ENST00000475146 RIMS1Q86UR5 1692 aaKnown RBP37.69■■■■□ 3.62
CPNE1-223ENST00000475146 ATP7AQ04656 1500 aa37.66■■■■□ 3.62
CPNE1-223ENST00000475146 MBD5Q9P267 1494 aa37.66■■■■□ 3.62
CPNE1-223ENST00000475146 INO80Q9ULG1 1556 aaPredicted RBP37.64■■■■□ 3.62
CPNE1-223ENST00000475146 FER1L4A9Z1Z3 1794 aa37.61■■■■□ 3.61
CPNE1-223ENST00000475146 MYOM3Q5VTT5 1437 aa37.59■■■■□ 3.61
CPNE1-223ENST00000475146 AGLP35573 1532 aa37.58■■■■□ 3.61
CPNE1-223ENST00000475146 CCDC141Q6ZP82 1450 aa37.58■■■■□ 3.61
CPNE1-223ENST00000475146 PLPPR3Q6T4P5 718 aa37.55■■■■□ 3.6
CPNE1-223ENST00000475146 MIA2Q96PC5 1412 aa37.53■■■■□ 3.6
CPNE1-223ENST00000475146 RSPH4AQ5TD94 716 aa37.51■■■■□ 3.6
CPNE1-223ENST00000475146 A2MP01023 1474 aa37.5■■■■□ 3.59
CPNE1-223ENST00000475146 ARHGEF5Q12774 1597 aa37.5■■■■□ 3.59
CPNE1-223ENST00000475146 RTEL1-TNFRSF6BF6WH68 1400 aa37.49■■■■□ 3.59
CPNE1-223ENST00000475146 ADGBQ8N7X0 1667 aa37.45■■■■□ 3.59
CPNE1-223ENST00000475146 PLXNC1O60486 1568 aa37.45■■■■□ 3.59
CPNE1-223ENST00000475146 TSPY4P0CV99 314 aa37.41■■■■□ 3.58
CPNE1-223ENST00000475146 TSPY10P0CW01 314 aa37.41■■■■□ 3.58
CPNE1-223ENST00000475146 ESF1Q9H501 851 aaKnown RBP37.41■■■■□ 3.58
CPNE1-223ENST00000475146 PTPN23Q9H3S7 1636 aa37.36■■■■□ 3.57
CPNE1-223ENST00000475146 FGD6Q6ZV73 1430 aa37.34■■■■□ 3.57
CPNE1-223ENST00000475146 CEBPAP49715 358 aaPredicted RBP37.33■■■■□ 3.57
CPNE1-223ENST00000475146 DHX29Q7Z478 1369 aaKnown RBP37.31■■■■□ 3.56
CPNE1-223ENST00000475146 CNTLNQ9NXG0 1405 aa37.3■■■■□ 3.56
CPNE1-223ENST00000475146 MAST1Q9Y2H9 1570 aa37.29■■■■□ 3.56
CPNE1-223ENST00000475146 GGT6Q6P531 493 aa37.28■■■■□ 3.56
CPNE1-223ENST00000475146 LMTK3Q96Q04 1460 aa37.27■■■■□ 3.56
CPNE1-223ENST00000475146 TCOF1Q13428 1488 aaKnown RBP37.26■■■■□ 3.55
CPNE1-223ENST00000475146 C3P01024 1663 aa37.24■■■■□ 3.55
CPNE1-223ENST00000475146 KIF3BO15066 747 aa37.2■■■■□ 3.55
CPNE1-223ENST00000475146 ABCC5O15440 1437 aa37.19■■■■□ 3.54
CPNE1-223ENST00000475146 CROCC2H7BZ55 1655 aa37.18■■■■□ 3.54
CPNE1-223ENST00000475146 MROH2AA6NES4 1674 aa37.18■■■■□ 3.54
CPNE1-223ENST00000475146 CLTCQ00610 1675 aaKnown RBP37.18■■■■□ 3.54
CPNE1-223ENST00000475146 SHANK2Q9UPX8 1470 aa37.17■■■■□ 3.54
CPNE1-223ENST00000475146 DAPK1P53355 1430 aa37.17■■■■□ 3.54
CPNE1-223ENST00000475146 DNMT1P26358 1616 aaKnown RBP37.17■■■■□ 3.54
CPNE1-223ENST00000475146 PREX1Q8TCU6 1659 aa37.14■■■■□ 3.54
CPNE1-223ENST00000475146 PPP6R1Q9UPN7 881 aa37.13■■■■□ 3.53
CPNE1-223ENST00000475146 ZMYM3Q14202 1370 aa37.13■■■■□ 3.53
CPNE1-223ENST00000475146 FAM50AQ14320 339 aaKnown RBP37.12■■■■□ 3.53
CPNE1-223ENST00000475146 HSPA2P54652 639 aa37.11■■■■□ 3.53
CPNE1-223ENST00000475146 PPARGC1BQ86YN6 1023 aaKnown RBP37.11■■■■□ 3.53
CPNE1-223ENST00000475146 UHRF1BP1Q6BDS2 1440 aa37.08■■■■□ 3.53
CPNE1-223ENST00000475146 KIF15Q9NS87 1388 aa37.06■■■■□ 3.52
CPNE1-223ENST00000475146 SETD1BQ9UPS6 1966 aaKnown RBP37.06■■■■□ 3.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms