RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CUL7Q14999 1698 aa18.94■□□□□ 0.62
CCDC88A-211ENST00000471947 CCDC184Q52MB2 194 aa18.94■□□□□ 0.62
CCDC88A-211ENST00000471947 C11orf95C9JLR9 678 aaPredicted RBP18.93■□□□□ 0.62
CCDC88A-211ENST00000471947 UACAQ9BZF9 1416 aa18.92■□□□□ 0.62
CCDC88A-211ENST00000471947 GRIN2AQ12879 1464 aa18.92■□□□□ 0.62
CCDC88A-211ENST00000471947 NPM1P06748 294 aaKnown RBP eCLIP18.89■□□□□ 0.62
CCDC88A-211ENST00000471947 MAGI3Q5TCQ9 1506 aa18.89■□□□□ 0.62
CCDC88A-211ENST00000471947 KIAA0586Q9BVV6 1533 aa18.89■□□□□ 0.61
CCDC88A-211ENST00000471947 HFM1A2PYH4 1435 aa18.89■□□□□ 0.61
CCDC88A-211ENST00000471947 AFAP1Q8N556 730 aa18.88■□□□□ 0.61
CCDC88A-211ENST00000471947 WASHC2AQ641Q2 1341 aa18.88■□□□□ 0.61
CCDC88A-211ENST00000471947 NUTM2DQ5VT03 806 aaPredicted RBP18.87■□□□□ 0.61
CCDC88A-211ENST00000471947 TIMELESSQ9UNS1 1208 aa18.85■□□□□ 0.61
CCDC88A-211ENST00000471947 ANKRD30AQ9BXX3 1397 aa18.84■□□□□ 0.61
CCDC88A-211ENST00000471947 CC2D1BQ5T0F9 858 aaKnown RBP18.84■□□□□ 0.61
CCDC88A-211ENST00000471947 TMC1Q8TDI8 760 aa18.84■□□□□ 0.61
CCDC88A-211ENST00000471947 ABCA5Q8WWZ7 1642 aa18.83■□□□□ 0.61
CCDC88A-211ENST00000471947 ARHGEF11O15085 1522 aa18.83■□□□□ 0.6
CCDC88A-211ENST00000471947 ST20-MTHFSA0A0A6YYL1 179 aa18.83■□□□□ 0.6
CCDC88A-211ENST00000471947 GGT6Q6P531 493 aa18.83■□□□□ 0.6
CCDC88A-211ENST00000471947 CTTNBP2Q8WZ74 1663 aa18.82■□□□□ 0.6
CCDC88A-211ENST00000471947 TARBP1Q13395 1621 aaKnown RBP18.82■□□□□ 0.6
CCDC88A-211ENST00000471947 EHBP1L1Q8N3D4 1523 aa18.81■□□□□ 0.6
CCDC88A-211ENST00000471947 NUP153P49790 1475 aaKnown RBP18.81■□□□□ 0.6
CCDC88A-211ENST00000471947 PTPN23Q9H3S7 1636 aa18.8■□□□□ 0.6
CCDC88A-211ENST00000471947 ABCC5O15440 1437 aa18.8■□□□□ 0.6
CCDC88A-211ENST00000471947 DAPK1P53355 1430 aa18.79■□□□□ 0.6
CCDC88A-211ENST00000471947 MAP3K1Q13233 1512 aa18.79■□□□□ 0.6
CCDC88A-211ENST00000471947 SUPT6HQ7KZ85 1726 aaKnown RBP18.78■□□□□ 0.6
CCDC88A-211ENST00000471947 KIF3BO15066 747 aa18.78■□□□□ 0.6
CCDC88A-211ENST00000471947 TROQ12816 1431 aaPredicted RBP18.77■□□□□ 0.6
CCDC88A-211ENST00000471947 SYNJ2O15056 1496 aa18.77■□□□□ 0.6
CCDC88A-211ENST00000471947 KIF15Q9NS87 1388 aa18.76■□□□□ 0.59
CCDC88A-211ENST00000471947 NBPF1Q3BBV0 1214 aa18.76■□□□□ 0.59
CCDC88A-211ENST00000471947 ADAMTS12P58397 1594 aa18.76■□□□□ 0.59
CCDC88A-211ENST00000471947 DISP1Q96F81 1524 aa18.76■□□□□ 0.59
CCDC88A-211ENST00000471947 HECW1Q76N89 1606 aa18.75■□□□□ 0.59
CCDC88A-211ENST00000471947 ANKRD50Q9ULJ7 1429 aa18.75■□□□□ 0.59
CCDC88A-211ENST00000471947 EIF4G3O43432 1585 aaKnown RBP18.75■□□□□ 0.59
CCDC88A-211ENST00000471947 SAFB2Q14151 953 aaKnown RBP eCLIP18.74■□□□□ 0.59
CCDC88A-211ENST00000471947 EFCAB2Q5VUJ9 269 aa18.74■□□□□ 0.59
CCDC88A-211ENST00000471947 CYB5RLQ6IPT4 315 aa18.73■□□□□ 0.59
CCDC88A-211ENST00000471947 KIF7Q2M1P5 1343 aa18.72■□□□□ 0.59
CCDC88A-211ENST00000471947 TNNT2P45379 298 aaPredicted RBP18.72■□□□□ 0.59
CCDC88A-211ENST00000471947 MLECQ14165 292 aa18.72■□□□□ 0.59
CCDC88A-211ENST00000471947 UGGT2Q9NYU1 1516 aa18.7■□□□□ 0.58
CCDC88A-211ENST00000471947 CFAP43Q8NDM7 1665 aa18.69■□□□□ 0.58
CCDC88A-211ENST00000471947 PRKRIP1Q9H875 184 aaPredicted RBP18.69■□□□□ 0.58
CCDC88A-211ENST00000471947 SPAG9O60271 1321 aaKnown RBP18.68■□□□□ 0.58
CCDC88A-211ENST00000471947 PBRM1Q86U86 1689 aa18.68■□□□□ 0.58
CCDC88A-211ENST00000471947 KDM6BO15054 1643 aa18.67■□□□□ 0.58
CCDC88A-211ENST00000471947 ROCK2O75116 1388 aaKnown RBP18.67■□□□□ 0.58
CCDC88A-211ENST00000471947 B4GALNT3Q6L9W6 998 aa18.66■□□□□ 0.58
CCDC88A-211ENST00000471947 CAMSAP2Q08AD1 1489 aa18.66■□□□□ 0.58
CCDC88A-211ENST00000471947 MIA2Q96PC5 1412 aa18.66■□□□□ 0.58
CCDC88A-211ENST00000471947 USP47Q96K76 1375 aa18.66■□□□□ 0.58
CCDC88A-211ENST00000471947 ATP10BO94823 1461 aa18.66■□□□□ 0.58
CCDC88A-211ENST00000471947 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.65■□□□□ 0.581e-12■□□□□ 9.9
CCDC88A-211ENST00000471947 GPATCH8Q9UKJ3 1502 aaKnown RBP18.65■□□□□ 0.58
CCDC88A-211ENST00000471947 C9orf84Q5VXU9 1444 aa18.64■□□□□ 0.58
CCDC88A-211ENST00000471947 SAMD9Q5K651 1589 aa18.64■□□□□ 0.57
CCDC88A-211ENST00000471947 CCER2I3L3R5 266 aa18.64■□□□□ 0.57
CCDC88A-211ENST00000471947 MAGI1Q96QZ7 1491 aaPredicted RBP18.64■□□□□ 0.57
CCDC88A-211ENST00000471947 WDR62O43379 1518 aa18.64■□□□□ 0.57
CCDC88A-211ENST00000471947 ANKRD30BQ9BXX2 1392 aa18.64■□□□□ 0.57
CCDC88A-211ENST00000471947 NCOA1Q15788 1441 aa18.63■□□□□ 0.57
CCDC88A-211ENST00000471947 KIAA0556O60303 1618 aa18.62■□□□□ 0.57
CCDC88A-211ENST00000471947 CCDC7Q96M83 1385 aa18.61■□□□□ 0.57
CCDC88A-211ENST00000471947 CEP170Q5SW79 1584 aa18.61■□□□□ 0.57
CCDC88A-211ENST00000471947 ARHGAP5Q13017 1502 aa18.59■□□□□ 0.57
CCDC88A-211ENST00000471947 STAG3Q9UJ98 1225 aa18.58■□□□□ 0.57
CCDC88A-211ENST00000471947 BCL11AQ9H165 835 aa18.57■□□□□ 0.56
CCDC88A-211ENST00000471947 STK26Q9P289 416 aa18.57■□□□□ 0.56
CCDC88A-211ENST00000471947 RAPGEF6Q8TEU7 1601 aa18.57■□□□□ 0.56
CCDC88A-211ENST00000471947 OSCARQ8IYS5 282 aa18.57■□□□□ 0.56
CCDC88A-211ENST00000471947 RAPGEF3O95398 923 aa18.56■□□□□ 0.56
CCDC88A-211ENST00000471947 NEUROD2Q15784 382 aa18.56■□□□□ 0.56
CCDC88A-211ENST00000471947 KIF14Q15058 1648 aa18.56■□□□□ 0.56
CCDC88A-211ENST00000471947 CCDC144AA2RUR9 1427 aa18.55■□□□□ 0.56
CCDC88A-211ENST00000471947 AKNAQ7Z591 1439 aa18.54■□□□□ 0.56
CCDC88A-211ENST00000471947 ERICH6Q7L0X2 663 aa18.53■□□□□ 0.56
CCDC88A-211ENST00000471947 LRRIQ1Q96JM4 1722 aa18.53■□□□□ 0.56
CCDC88A-211ENST00000471947 PLEKHG5O94827 1062 aa18.52■□□□□ 0.55
CCDC88A-211ENST00000471947 PANK3Q9H999 370 aa18.52■□□□□ 0.55
CCDC88A-211ENST00000471947 KIAA1107Q9UPP5 1409 aa18.51■□□□□ 0.55
CCDC88A-211ENST00000471947 TRAK1Q9UPV9 953 aa18.51■□□□□ 0.55
CCDC88A-211ENST00000471947 SCAPERQ9BY12 1400 aa18.5■□□□□ 0.55
CCDC88A-211ENST00000471947 TMEM132EQ6IEE7 984 aa18.49■□□□□ 0.55
CCDC88A-211ENST00000471947 TSHZ2Q9NRE2 1034 aa18.49■□□□□ 0.55
CCDC88A-211ENST00000471947 KNSTRNQ9Y448 316 aa18.48■□□□□ 0.55
CCDC88A-211ENST00000471947 PLEKHH2Q8IVE3 1493 aa18.47■□□□□ 0.55
CCDC88A-211ENST00000471947 NUP160Q12769 1436 aa18.47■□□□□ 0.55
CCDC88A-211ENST00000471947 CFAP70Q5T0N1 1121 aa18.47■□□□□ 0.55
CCDC88A-211ENST00000471947 ERCC6L2Q5T890 1561 aa18.47■□□□□ 0.55
CCDC88A-211ENST00000471947 NPM2Q86SE8 214 aaKnown RBP18.46■□□□□ 0.55
CCDC88A-211ENST00000471947 ROCK1Q13464 1354 aa18.46■□□□□ 0.55
CCDC88A-211ENST00000471947 CCDC136Q96JN2 1154 aa18.45■□□□□ 0.54
CCDC88A-211ENST00000471947 TMF1P82094 1093 aa18.45■□□□□ 0.54
CCDC88A-211ENST00000471947 CCDC146Q8IYE0 955 aa18.45■□□□□ 0.54
CCDC88A-211ENST00000471947 RSPH4AQ5TD94 716 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms