RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 LRRC9Q6ZRR7 1453 aa24.04■■□□□ 1.44
SDC3-203ENST00000471567 CCNB3Q8WWL7 1395 aa24.03■■□□□ 1.44
SDC3-203ENST00000471567 RAPGEF3O95398 923 aa24.03■■□□□ 1.44
SDC3-203ENST00000471567 GPATCH8Q9UKJ3 1502 aaKnown RBP24.03■■□□□ 1.44
SDC3-203ENST00000471567 ADGRL1O94910 1474 aa24.02■■□□□ 1.44
SDC3-203ENST00000471567 CDC42BPBQ9Y5S2 1711 aa24.02■■□□□ 1.44
SDC3-203ENST00000471567 CDC42BPAQ5VT25 1732 aa24.01■■□□□ 1.43
SDC3-203ENST00000471567 SCAPERQ9BY12 1400 aa24.01■■□□□ 1.43
SDC3-203ENST00000471567 SUPT6HQ7KZ85 1726 aaKnown RBP23.98■■□□□ 1.43
SDC3-203ENST00000471567 KANK4Q5T7N3 995 aaPredicted RBP23.98■■□□□ 1.43
SDC3-203ENST00000471567 NCOA2Q15596 1464 aa23.97■■□□□ 1.43
SDC3-203ENST00000471567 CFDP1Q9UEE9 299 aaPredicted RBP23.97■■□□□ 1.43
SDC3-203ENST00000471567 FRMPD1Q5SYB0 1578 aa23.96■■□□□ 1.43
SDC3-203ENST00000471567 RICTORQ6R327 1708 aa23.95■■□□□ 1.42
SDC3-203ENST00000471567 POGZQ7Z3K3 1410 aa23.93■■□□□ 1.42
SDC3-203ENST00000471567 ZNF777Q9ULD5 760 aaPredicted RBP23.91■■□□□ 1.42
SDC3-203ENST00000471567 ITSN2Q9NZM3 1697 aa23.91■■□□□ 1.42
SDC3-203ENST00000471567 ABCC1P33527 1531 aa23.9■■□□□ 1.42
SDC3-203ENST00000471567 ZMYM4Q5VZL5 1548 aa23.89■■□□□ 1.42
SDC3-203ENST00000471567 ZNF518AQ6AHZ1 1483 aa23.89■■□□□ 1.42
SDC3-203ENST00000471567 PLEKHH2Q8IVE3 1493 aa23.89■■□□□ 1.42
SDC3-203ENST00000471567 MAGI2Q86UL8 1455 aa23.88■■□□□ 1.41
SDC3-203ENST00000471567 KIAA1107Q9UPP5 1409 aa23.88■■□□□ 1.41
SDC3-203ENST00000471567 SAMD9LQ8IVG5 1584 aa23.87■■□□□ 1.41
SDC3-203ENST00000471567 ARHGEF12Q9NZN5 1544 aa23.87■■□□□ 1.41
SDC3-203ENST00000471567 AFAP1Q8N556 730 aa23.86■■□□□ 1.41
SDC3-203ENST00000471567 TRAPPC8Q9Y2L5 1435 aa23.84■■□□□ 1.41
SDC3-203ENST00000471567 KDM5CP41229 1560 aa23.83■■□□□ 1.41
SDC3-203ENST00000471567 ZFYVE16Q7Z3T8 1539 aa23.81■■□□□ 1.4
SDC3-203ENST00000471567 SYCP2Q9BX26 1530 aa23.81■■□□□ 1.4
SDC3-203ENST00000471567 HNRNPMP52272 730 aaKnown RBP eCLIP23.81■■□□□ 1.4
SDC3-203ENST00000471567 ZNF644Q9H582 1327 aaPredicted RBP23.81■■□□□ 1.4
SDC3-203ENST00000471567 ARHGEF40Q8TER5 1519 aa23.8■■□□□ 1.4
SDC3-203ENST00000471567 MYOM3Q5VTT5 1437 aa23.8■■□□□ 1.4
SDC3-203ENST00000471567 MIA2Q96PC5 1412 aa23.79■■□□□ 1.4
SDC3-203ENST00000471567 MLH3Q9UHC1 1453 aa23.79■■□□□ 1.4
SDC3-203ENST00000471567 YEATS2Q9ULM3 1422 aa23.78■■□□□ 1.4
SDC3-203ENST00000471567 RSPH4AQ5TD94 716 aa23.76■■□□□ 1.39
SDC3-203ENST00000471567 CAMSAP2Q08AD1 1489 aa23.75■■□□□ 1.39
SDC3-203ENST00000471567 MBD5Q9P267 1494 aa23.75■■□□□ 1.39
SDC3-203ENST00000471567 HECW2Q9P2P5 1572 aa23.75■■□□□ 1.39
SDC3-203ENST00000471567 MYT1LQ9UL68 1186 aa23.75■■□□□ 1.39
SDC3-203ENST00000471567 ATP10AO60312 1499 aa23.74■■□□□ 1.39
SDC3-203ENST00000471567 SPAG9O60271 1321 aaKnown RBP23.73■■□□□ 1.39
SDC3-203ENST00000471567 KDM4FA0A1W2PPD8 638 aa23.72■■□□□ 1.39
SDC3-203ENST00000471567 C9orf84Q5VXU9 1444 aa23.69■■□□□ 1.38
SDC3-203ENST00000471567 ARID4BQ4LE39 1312 aaPredicted RBP23.68■■□□□ 1.38
SDC3-203ENST00000471567 CCDC141Q6ZP82 1450 aa23.68■■□□□ 1.38
SDC3-203ENST00000471567 KIDINS220Q9ULH0 1771 aa23.68■■□□□ 1.38
SDC3-203ENST00000471567 ARHGEF5Q12774 1597 aa23.67■■□□□ 1.38
SDC3-203ENST00000471567 FGD6Q6ZV73 1430 aa23.67■■□□□ 1.38
SDC3-203ENST00000471567 DIP2CQ9Y2E4 1556 aa23.66■■□□□ 1.38
SDC3-203ENST00000471567 RTEL1-TNFRSF6BF6WH68 1400 aa23.66■■□□□ 1.38
SDC3-203ENST00000471567 ATP7AQ04656 1500 aa23.64■■□□□ 1.38
SDC3-203ENST00000471567 ABCA6Q8N139 1617 aa23.64■■□□□ 1.38
SDC3-203ENST00000471567 REREQ9P2R6 1566 aa23.64■■□□□ 1.37
SDC3-203ENST00000471567 INO80Q9ULG1 1556 aaPredicted RBP23.64■■□□□ 1.37
SDC3-203ENST00000471567 AEBP2Q6ZN18 517 aaPredicted RBP23.63■■□□□ 1.37
SDC3-203ENST00000471567 PTPN23Q9H3S7 1636 aa23.62■■□□□ 1.37
SDC3-203ENST00000471567 TSPY4P0CV99 314 aa23.62■■□□□ 1.37
SDC3-203ENST00000471567 TSPY10P0CW01 314 aa23.62■■□□□ 1.37
SDC3-203ENST00000471567 TCOF1Q13428 1488 aaKnown RBP23.62■■□□□ 1.37
SDC3-203ENST00000471567 BCORL1Q5H9F3 1711 aa23.59■■□□□ 1.37
SDC3-203ENST00000471567 SIGLEC1Q9BZZ2 1709 aa23.59■■□□□ 1.37
SDC3-203ENST00000471567 AGLP35573 1532 aa23.58■■□□□ 1.36
SDC3-203ENST00000471567 PPARGC1BQ86YN6 1023 aaKnown RBP23.57■■□□□ 1.36
SDC3-203ENST00000471567 ADAMTSL3P82987 1691 aa23.57■■□□□ 1.36
SDC3-203ENST00000471567 MAST1Q9Y2H9 1570 aa23.54■■□□□ 1.36
SDC3-203ENST00000471567 A2MP01023 1474 aa23.54■■□□□ 1.36
SDC3-203ENST00000471567 ABCC5O15440 1437 aa23.52■■□□□ 1.36
SDC3-203ENST00000471567 ADGBQ8N7X0 1667 aa23.52■■□□□ 1.36
SDC3-203ENST00000471567 MLECQ14165 292 aa23.52■■□□□ 1.36
SDC3-203ENST00000471567 DAPK1P53355 1430 aa23.5■■□□□ 1.35
SDC3-203ENST00000471567 SHANK2Q9UPX8 1470 aa23.5■■□□□ 1.35
SDC3-203ENST00000471567 PLXNC1O60486 1568 aa23.5■■□□□ 1.35
SDC3-203ENST00000471567 FAM50AQ14320 339 aaKnown RBP23.5■■□□□ 1.35
SDC3-203ENST00000471567 DNMT1P26358 1616 aaKnown RBP23.5■■□□□ 1.35
SDC3-203ENST00000471567 DHX29Q7Z478 1369 aaKnown RBP23.5■■□□□ 1.35
SDC3-203ENST00000471567 MADDQ8WXG6 1647 aa23.47■■□□□ 1.35
SDC3-203ENST00000471567 CROCC2H7BZ55 1655 aa23.45■■□□□ 1.34
SDC3-203ENST00000471567 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.45■■□□□ 1.348e-8■■■■■ 33
SDC3-203ENST00000471567 PTPRMP28827 1452 aa23.44■■□□□ 1.34
SDC3-203ENST00000471567 FER1L4A9Z1Z3 1794 aa23.4■■□□□ 1.34
SDC3-203ENST00000471567 PPP6R1Q9UPN7 881 aa23.4■■□□□ 1.34
SDC3-203ENST00000471567 RIMS1Q86UR5 1692 aaKnown RBP23.4■■□□□ 1.34
SDC3-203ENST00000471567 ANKRD30AQ9BXX3 1397 aa23.4■■□□□ 1.34
SDC3-203ENST00000471567 ESF1Q9H501 851 aaKnown RBP23.39■■□□□ 1.33
SDC3-203ENST00000471567 RRBP1Q9P2E9 1410 aaKnown RBP23.39■■□□□ 1.33
SDC3-203ENST00000471567 KIF3BO15066 747 aa23.38■■□□□ 1.33
SDC3-203ENST00000471567 CHIC2Q9UKJ5 165 aa23.38■■□□□ 1.33
SDC3-203ENST00000471567 KIF15Q9NS87 1388 aa23.38■■□□□ 1.33
SDC3-203ENST00000471567 DUOX2Q9NRD8 1548 aa23.38■■□□□ 1.33
SDC3-203ENST00000471567 GGT6Q6P531 493 aa23.37■■□□□ 1.33
SDC3-203ENST00000471567 NCOA1Q15788 1441 aa23.36■■□□□ 1.33
SDC3-203ENST00000471567 CNTLNQ9NXG0 1405 aa23.36■■□□□ 1.33
SDC3-203ENST00000471567 RRP7BPQ9NSQ0 103 aa23.36■■□□□ 1.33
SDC3-203ENST00000471567 ADGRL2O95490 1459 aa23.36■■□□□ 1.33
SDC3-203ENST00000471567 EIF2AK4Q9P2K8 1649 aaKnown RBP23.32■■□□□ 1.32
SDC3-203ENST00000471567 PTPRKQ15262 1439 aa23.32■■□□□ 1.32
SDC3-203ENST00000471567 ERBINQ96RT1 1412 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms