RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 CDC42BPBQ9Y5S2 1711 aa22.78■■□□□ 1.24
SQSTM1-205ENST00000464493 CDC42BPAQ5VT25 1732 aa22.77■■□□□ 1.23
SQSTM1-205ENST00000464493 CCNB3Q8WWL7 1395 aa22.76■■□□□ 1.23
SQSTM1-205ENST00000464493 PREX2Q70Z35 1606 aa22.76■■□□□ 1.23
SQSTM1-205ENST00000464493 RAPGEF3O95398 923 aa22.76■■□□□ 1.23
SQSTM1-205ENST00000464493 GPATCH8Q9UKJ3 1502 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-205ENST00000464493 SUPT6HQ7KZ85 1726 aaKnown RBP22.74■■□□□ 1.23
SQSTM1-205ENST00000464493 ADGRL1O94910 1474 aa22.73■■□□□ 1.23
SQSTM1-205ENST00000464493 DENND4BO75064 1496 aaPredicted RBP22.73■■□□□ 1.23
SQSTM1-205ENST00000464493 SCAPERQ9BY12 1400 aa22.72■■□□□ 1.23
SQSTM1-205ENST00000464493 NCOA2Q15596 1464 aa22.72■■□□□ 1.23
SQSTM1-205ENST00000464493 CFDP1Q9UEE9 299 aaPredicted RBP22.71■■□□□ 1.23
SQSTM1-205ENST00000464493 ZNF777Q9ULD5 760 aaPredicted RBP22.69■■□□□ 1.22
SQSTM1-205ENST00000464493 RICTORQ6R327 1708 aa22.66■■□□□ 1.22
SQSTM1-205ENST00000464493 FRMPD1Q5SYB0 1578 aa22.66■■□□□ 1.22
SQSTM1-205ENST00000464493 ITSN2Q9NZM3 1697 aa22.65■■□□□ 1.22
SQSTM1-205ENST00000464493 POGZQ7Z3K3 1410 aa22.64■■□□□ 1.21
SQSTM1-205ENST00000464493 SAMD9LQ8IVG5 1584 aa22.62■■□□□ 1.21
SQSTM1-205ENST00000464493 ABCC1P33527 1531 aa22.62■■□□□ 1.21
SQSTM1-205ENST00000464493 AFAP1Q8N556 730 aa22.61■■□□□ 1.21
SQSTM1-205ENST00000464493 ARHGEF12Q9NZN5 1544 aa22.6■■□□□ 1.21
SQSTM1-205ENST00000464493 ZNF518AQ6AHZ1 1483 aa22.6■■□□□ 1.21
SQSTM1-205ENST00000464493 PLEKHH2Q8IVE3 1493 aa22.59■■□□□ 1.21
SQSTM1-205ENST00000464493 ZNF644Q9H582 1327 aaPredicted RBP22.58■■□□□ 1.21
SQSTM1-205ENST00000464493 HNRNPMP52272 730 aaKnown RBP eCLIP22.58■■□□□ 1.214e-8■■■■□ 21.3
SQSTM1-205ENST00000464493 KIAA1107Q9UPP5 1409 aa22.57■■□□□ 1.2
SQSTM1-205ENST00000464493 ZMYM4Q5VZL5 1548 aa22.57■■□□□ 1.2
SQSTM1-205ENST00000464493 TRAPPC8Q9Y2L5 1435 aa22.57■■□□□ 1.2
SQSTM1-205ENST00000464493 MAGI2Q86UL8 1455 aa22.56■■□□□ 1.2
SQSTM1-205ENST00000464493 SYCP2Q9BX26 1530 aa22.55■■□□□ 1.2
SQSTM1-205ENST00000464493 MYOM3Q5VTT5 1437 aa22.55■■□□□ 1.2
SQSTM1-205ENST00000464493 MYT1LQ9UL68 1186 aa22.53■■□□□ 1.2
SQSTM1-205ENST00000464493 KDM5CP41229 1560 aa22.53■■□□□ 1.2
SQSTM1-205ENST00000464493 MIA2Q96PC5 1412 aa22.52■■□□□ 1.2
SQSTM1-205ENST00000464493 ZFYVE16Q7Z3T8 1539 aa22.52■■□□□ 1.19
SQSTM1-205ENST00000464493 YEATS2Q9ULM3 1422 aa22.5■■□□□ 1.19
SQSTM1-205ENST00000464493 CAMSAP2Q08AD1 1489 aa22.5■■□□□ 1.19
SQSTM1-205ENST00000464493 ARHGEF40Q8TER5 1519 aa22.5■■□□□ 1.19
SQSTM1-205ENST00000464493 MBD5Q9P267 1494 aa22.49■■□□□ 1.19
SQSTM1-205ENST00000464493 MLH3Q9UHC1 1453 aa22.48■■□□□ 1.19
SQSTM1-205ENST00000464493 PPARGC1BQ86YN6 1023 aaKnown RBP22.48■■□□□ 1.19
SQSTM1-205ENST00000464493 HECW2Q9P2P5 1572 aa22.47■■□□□ 1.19
SQSTM1-205ENST00000464493 RSPH4AQ5TD94 716 aa22.47■■□□□ 1.19
SQSTM1-205ENST00000464493 SPAG9O60271 1321 aaKnown RBP22.47■■□□□ 1.19
SQSTM1-205ENST00000464493 ATP10AO60312 1499 aa22.44■■□□□ 1.18
SQSTM1-205ENST00000464493 FGD6Q6ZV73 1430 aa22.43■■□□□ 1.18
SQSTM1-205ENST00000464493 ARID4BQ4LE39 1312 aaPredicted RBP22.43■■□□□ 1.18
SQSTM1-205ENST00000464493 KDM4FA0A1W2PPD8 638 aa22.42■■□□□ 1.18
SQSTM1-205ENST00000464493 KIDINS220Q9ULH0 1771 aa22.42■■□□□ 1.18
SQSTM1-205ENST00000464493 CCDC141Q6ZP82 1450 aa22.41■■□□□ 1.18
SQSTM1-205ENST00000464493 PTPN23Q9H3S7 1636 aa22.41■■□□□ 1.18
SQSTM1-205ENST00000464493 ARHGEF5Q12774 1597 aa22.4■■□□□ 1.18
SQSTM1-205ENST00000464493 C9orf84Q5VXU9 1444 aa22.4■■□□□ 1.18
SQSTM1-205ENST00000464493 DIP2CQ9Y2E4 1556 aa22.39■■□□□ 1.18
SQSTM1-205ENST00000464493 TSPY4P0CV99 314 aa22.39■■□□□ 1.17
SQSTM1-205ENST00000464493 TSPY10P0CW01 314 aa22.39■■□□□ 1.17
SQSTM1-205ENST00000464493 ATP7AQ04656 1500 aa22.38■■□□□ 1.17
SQSTM1-205ENST00000464493 ABCA6Q8N139 1617 aa22.38■■□□□ 1.17
SQSTM1-205ENST00000464493 INO80Q9ULG1 1556 aaPredicted RBP22.37■■□□□ 1.17
SQSTM1-205ENST00000464493 TCOF1Q13428 1488 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-205ENST00000464493 RTEL1-TNFRSF6BF6WH68 1400 aa22.36■■□□□ 1.17
SQSTM1-205ENST00000464493 SIGLEC1Q9BZZ2 1709 aa22.34■■□□□ 1.17
SQSTM1-205ENST00000464493 REREQ9P2R6 1566 aa22.33■■□□□ 1.16
SQSTM1-205ENST00000464493 FAM50AQ14320 339 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-205ENST00000464493 AEBP2Q6ZN18 517 aaPredicted RBP22.32■■□□□ 1.16
SQSTM1-205ENST00000464493 BCORL1Q5H9F3 1711 aa22.31■■□□□ 1.16
SQSTM1-205ENST00000464493 MLECQ14165 292 aa22.29■■□□□ 1.16
SQSTM1-205ENST00000464493 ABCC5O15440 1437 aa22.29■■□□□ 1.16
SQSTM1-205ENST00000464493 A2MP01023 1474 aa22.28■■□□□ 1.16
SQSTM1-205ENST00000464493 ADGBQ8N7X0 1667 aa22.27■■□□□ 1.16
SQSTM1-205ENST00000464493 DAPK1P53355 1430 aa22.27■■□□□ 1.16
SQSTM1-205ENST00000464493 MAST1Q9Y2H9 1570 aa22.27■■□□□ 1.16
SQSTM1-205ENST00000464493 DNMT1P26358 1616 aaKnown RBP22.27■■□□□ 1.16
SQSTM1-205ENST00000464493 ADAMTSL3P82987 1691 aa22.26■■□□□ 1.15
SQSTM1-205ENST00000464493 AGLP35573 1532 aa22.26■■□□□ 1.15
SQSTM1-205ENST00000464493 DHX29Q7Z478 1369 aaKnown RBP22.24■■□□□ 1.15
SQSTM1-205ENST00000464493 CROCC2H7BZ55 1655 aa22.23■■□□□ 1.15
SQSTM1-205ENST00000464493 SHANK2Q9UPX8 1470 aa22.23■■□□□ 1.15
SQSTM1-205ENST00000464493 PLXNC1O60486 1568 aa22.22■■□□□ 1.15
SQSTM1-205ENST00000464493 MADDQ8WXG6 1647 aa22.2■■□□□ 1.15
SQSTM1-205ENST00000464493 CHIC2Q9UKJ5 165 aa22.2■■□□□ 1.14
SQSTM1-205ENST00000464493 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.2■■□□□ 1.141e-6■□□□□ 11.1
SQSTM1-205ENST00000464493 RRBP1Q9P2E9 1410 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-205ENST00000464493 RRP7BPQ9NSQ0 103 aa22.17■■□□□ 1.14
SQSTM1-205ENST00000464493 PTPRMP28827 1452 aa22.15■■□□□ 1.14
SQSTM1-205ENST00000464493 FER1L4A9Z1Z3 1794 aa22.15■■□□□ 1.14
SQSTM1-205ENST00000464493 ANKRD30AQ9BXX3 1397 aa22.15■■□□□ 1.14
SQSTM1-205ENST00000464493 RIMS1Q86UR5 1692 aaKnown RBP22.15■■□□□ 1.14
SQSTM1-205ENST00000464493 KIF3BO15066 747 aa22.15■■□□□ 1.14
SQSTM1-205ENST00000464493 GGT6Q6P531 493 aa22.15■■□□□ 1.14
SQSTM1-205ENST00000464493 KIF15Q9NS87 1388 aa22.14■■□□□ 1.14
SQSTM1-205ENST00000464493 ESF1Q9H501 851 aaKnown RBP22.14■■□□□ 1.13
SQSTM1-205ENST00000464493 DUOX2Q9NRD8 1548 aa22.13■■□□□ 1.13
SQSTM1-205ENST00000464493 ITGAEP38570 1179 aa22.13■■□□□ 1.13
SQSTM1-205ENST00000464493 NCOA1Q15788 1441 aa22.13■■□□□ 1.13
SQSTM1-205ENST00000464493 PTPRKQ15262 1439 aa22.12■■□□□ 1.13
SQSTM1-205ENST00000464493 ADGRL2O95490 1459 aa22.11■■□□□ 1.13
SQSTM1-205ENST00000464493 PPP6R1Q9UPN7 881 aa22.11■■□□□ 1.13
SQSTM1-205ENST00000464493 PLPPR3Q6T4P5 718 aa22.08■■□□□ 1.13
SQSTM1-205ENST00000464493 ERBINQ96RT1 1412 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms