RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ANKRD30AQ9BXX3 1397 aa8.45□□□□□ -1.06
VPS13D-202ENST00000460333 CDK13Q14004 1512 aaKnown RBP8.45□□□□□ -1.06
VPS13D-202ENST00000460333 SLC4A1APQ9BWU0 796 aaKnown RBP8.45□□□□□ -1.06
VPS13D-202ENST00000460333 DISP1Q96F81 1524 aa8.44□□□□□ -1.06
VPS13D-202ENST00000460333 PLPPR3Q6T4P5 718 aa8.43□□□□□ -1.06
VPS13D-202ENST00000460333 HFM1A2PYH4 1435 aa8.43□□□□□ -1.06
VPS13D-202ENST00000460333 PTPN23Q9H3S7 1636 aa8.43□□□□□ -1.06
VPS13D-202ENST00000460333 CEP170Q5SW79 1584 aa8.43□□□□□ -1.06
VPS13D-202ENST00000460333 UACAQ9BZF9 1416 aa8.42□□□□□ -1.06
VPS13D-202ENST00000460333 OSCARQ8IYS5 282 aa8.42□□□□□ -1.06
VPS13D-202ENST00000460333 PLB1Q6P1J6 1458 aa8.42□□□□□ -1.06
VPS13D-202ENST00000460333 NUP153P49790 1475 aaKnown RBP8.41□□□□□ -1.06
VPS13D-202ENST00000460333 EFCAB2Q5VUJ9 269 aa8.41□□□□□ -1.06
VPS13D-202ENST00000460333 SIN3AQ96ST3 1273 aa8.41□□□□□ -1.06
VPS13D-202ENST00000460333 MIER1Q8N108 512 aa8.4□□□□□ -1.06
VPS13D-202ENST00000460333 MPHOSPH9Q99550 1183 aa8.39□□□□□ -1.07
VPS13D-202ENST00000460333 ROCK1Q13464 1354 aa8.39□□□□□ -1.07
VPS13D-202ENST00000460333 TCOF1Q13428 1488 aaKnown RBP8.39□□□□□ -1.07
VPS13D-202ENST00000460333 KIF14Q15058 1648 aa8.39□□□□□ -1.07
VPS13D-202ENST00000460333 ZBTB47Q9UFB7 747 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-202ENST00000460333 AKNAQ7Z591 1439 aa8.39□□□□□ -1.07
VPS13D-202ENST00000460333 DAPK1P53355 1430 aa8.38□□□□□ -1.07
VPS13D-202ENST00000460333 STAG3Q9UJ98 1225 aa8.37□□□□□ -1.07
VPS13D-202ENST00000460333 ITSN2Q9NZM3 1697 aa8.37□□□□□ -1.07
VPS13D-202ENST00000460333 NAIPQ13075 1403 aa8.37□□□□□ -1.07
VPS13D-202ENST00000460333 PLEKHH2Q8IVE3 1493 aa8.37□□□□□ -1.07
VPS13D-202ENST00000460333 PPP1R15AO75807 674 aaPredicted RBP8.36□□□□□ -1.07
VPS13D-202ENST00000460333 ZNF644Q9H582 1327 aaPredicted RBP8.36□□□□□ -1.07
VPS13D-202ENST00000460333 HNRNPMP52272 730 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS13D-202ENST00000460333 AEBP2Q6ZN18 517 aaPredicted RBP8.35□□□□□ -1.07
VPS13D-202ENST00000460333 ATP10BO94823 1461 aa8.35□□□□□ -1.07
VPS13D-202ENST00000460333 ARID4BQ4LE39 1312 aaPredicted RBP8.35□□□□□ -1.07
VPS13D-202ENST00000460333 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.35□□□□□ -1.076e-8■■■■□ 25.9
VPS13D-202ENST00000460333 SUPT16HQ9Y5B9 1047 aaKnown RBP8.35□□□□□ -1.07
VPS13D-202ENST00000460333 EIF4G2P78344 907 aaKnown RBP eCLIP8.34□□□□□ -1.07
VPS13D-202ENST00000460333 ZNF326Q5BKZ1 582 aaKnown RBP8.34□□□□□ -1.07
VPS13D-202ENST00000460333 CAMSAP2Q08AD1 1489 aa8.34□□□□□ -1.07
VPS13D-202ENST00000460333 NUP155O75694 1391 aa8.33□□□□□ -1.08
VPS13D-202ENST00000460333 GPATCH8Q9UKJ3 1502 aaKnown RBP8.33□□□□□ -1.08
VPS13D-202ENST00000460333 ARHGEF11O15085 1522 aa8.33□□□□□ -1.08
VPS13D-202ENST00000460333 ARHGAP5Q13017 1502 aa8.33□□□□□ -1.08
VPS13D-202ENST00000460333 ABCC5O15440 1437 aa8.33□□□□□ -1.08
VPS13D-202ENST00000460333 NBR1Q14596 966 aa8.33□□□□□ -1.08
VPS13D-202ENST00000460333 ABCA8O94911 1581 aa8.32□□□□□ -1.08
VPS13D-202ENST00000460333 PKD2Q13563 968 aa8.32□□□□□ -1.08
VPS13D-202ENST00000460333 CHD1O14646 1710 aa8.32□□□□□ -1.08
VPS13D-202ENST00000460333 ANKRD50Q9ULJ7 1429 aa8.32□□□□□ -1.08
VPS13D-202ENST00000460333 MAGI3Q5TCQ9 1506 aa8.32□□□□□ -1.08
VPS13D-202ENST00000460333 C9orf84Q5VXU9 1444 aa8.32□□□□□ -1.08
VPS13D-202ENST00000460333 POLR3GLQ9BT43 218 aa8.31□□□□□ -1.08
VPS13D-202ENST00000460333 KANK1Q14678 1352 aa8.31□□□□□ -1.08
VPS13D-202ENST00000460333 KIF15Q9NS87 1388 aa8.31□□□□□ -1.08
VPS13D-202ENST00000460333 SPAG9O60271 1321 aaKnown RBP8.31□□□□□ -1.08
VPS13D-202ENST00000460333 DDX10Q13206 875 aaKnown RBP8.3□□□□□ -1.08
VPS13D-202ENST00000460333 ABCC2Q92887 1545 aa8.3□□□□□ -1.08
VPS13D-202ENST00000460333 PTPRKQ15262 1439 aa8.3□□□□□ -1.08
VPS13D-202ENST00000460333 ERICH6BQ5W0A0 696 aa8.3□□□□□ -1.08
VPS13D-202ENST00000460333 CCDC141Q6ZP82 1450 aa8.29□□□□□ -1.08
VPS13D-202ENST00000460333 DNMT1P26358 1616 aaKnown RBP8.29□□□□□ -1.08
VPS13D-202ENST00000460333 ANP32BQ92688 251 aaKnown RBP8.29□□□□□ -1.08
VPS13D-202ENST00000460333 DDRGK1Q96HY6 314 aa8.28□□□□□ -1.08
VPS13D-202ENST00000460333 NCOA1Q15788 1441 aa8.28□□□□□ -1.08
VPS13D-202ENST00000460333 NPM2Q86SE8 214 aaKnown RBP8.28□□□□□ -1.08
VPS13D-202ENST00000460333 PPM1GO15355 546 aaPredicted RBP8.28□□□□□ -1.08
VPS13D-202ENST00000460333 HNRNPUQ00839 825 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS13D-202ENST00000460333 FOXD1Q16676 465 aa8.27□□□□□ -1.08
VPS13D-202ENST00000460333 MAPKBP1O60336 1514 aa8.27□□□□□ -1.09
VPS13D-202ENST00000460333 PRKCSHP14314 528 aaPredicted RBP8.27□□□□□ -1.09
VPS13D-202ENST00000460333 L3MBTL2Q969R5 705 aa8.27□□□□□ -1.09
VPS13D-202ENST00000460333 SHANK2Q9UPX8 1470 aa8.27□□□□□ -1.09
VPS13D-202ENST00000460333 UHRF1BP1LA0JNW5 1464 aa8.26□□□□□ -1.09
VPS13D-202ENST00000460333 ADCY10Q96PN6 1610 aa8.26□□□□□ -1.09
VPS13D-202ENST00000460333 LRRIQ1Q96JM4 1722 aa8.26□□□□□ -1.09
VPS13D-202ENST00000460333 DEKP35659 375 aaKnown RBP8.26□□□□□ -1.09
VPS13D-202ENST00000460333 KDM2AQ9Y2K7 1162 aa8.26□□□□□ -1.09
VPS13D-202ENST00000460333 NOP58Q9Y2X3 529 aaKnown RBP8.26□□□□□ -1.09
VPS13D-202ENST00000460333 CCDC136Q96JN2 1154 aa8.25□□□□□ -1.09
VPS13D-202ENST00000460333 KIAA1107Q9UPP5 1409 aa8.25□□□□□ -1.09
VPS13D-202ENST00000460333 GCC2Q8IWJ2 1684 aa8.25□□□□□ -1.09
VPS13D-202ENST00000460333 CYB5RLQ6IPT4 315 aa8.25□□□□□ -1.09
VPS13D-202ENST00000460333 ADGRL2O95490 1459 aa8.24□□□□□ -1.09
VPS13D-202ENST00000460333 PLCH2O75038 1416 aa8.24□□□□□ -1.09
VPS13D-202ENST00000460333 CHGAP10645 457 aaKnown RBP8.24□□□□□ -1.09
VPS13D-202ENST00000460333 TSHZ2Q9NRE2 1034 aa8.24□□□□□ -1.09
VPS13D-202ENST00000460333 ABCC10Q5T3U5 1492 aa8.24□□□□□ -1.09
VPS13D-202ENST00000460333 HIRIP3Q9BW71 556 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-202ENST00000460333 RBM19Q9Y4C8 960 aaKnown RBP8.23□□□□□ -1.09
VPS13D-202ENST00000460333 CCDC144AA2RUR9 1427 aa8.23□□□□□ -1.09
VPS13D-202ENST00000460333 HSPA5P11021 654 aaKnown RBP8.23□□□□□ -1.09
VPS13D-202ENST00000460333 CARD11Q9BXL7 1154 aa8.23□□□□□ -1.09
VPS13D-202ENST00000460333 SHROOM2Q13796 1616 aa8.23□□□□□ -1.09
VPS13D-202ENST00000460333 DCAF11Q8TEB1 546 aa8.22□□□□□ -1.09
VPS13D-202ENST00000460333 ADGBQ8N7X0 1667 aa8.22□□□□□ -1.09
VPS13D-202ENST00000460333 WDR7Q9Y4E6 1490 aa8.22□□□□□ -1.09
VPS13D-202ENST00000460333 ANKRD30BQ9BXX2 1392 aa8.22□□□□□ -1.09
VPS13D-202ENST00000460333 RGL3Q3MIN7 710 aa8.22□□□□□ -1.09
VPS13D-202ENST00000460333 CLASP1Q7Z460 1538 aa8.22□□□□□ -1.09
VPS13D-202ENST00000460333 PPP4R2Q9NY27 417 aa8.21□□□□□ -1.09
VPS13D-202ENST00000460333 ARHGEF5Q12774 1597 aa8.21□□□□□ -1.09
VPS13D-202ENST00000460333 NEFMP07197 916 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms