RNA–Protein interactions for RNA: ENST00000459988.1

UBAP2-208, Transcript of ubiquitin associated protein 2, human

TSL 2

Gene UBAP2, Length 2,628 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBAP2-208	ENST00000459988	TOM1	O60784	492 aa		11.25	□□□□□ -0.61
UBAP2-208	ENST00000459988	DAXX	Q9UER7	740 aa	Predicted RBP	11.25	□□□□□ -0.61
UBAP2-208	ENST00000459988	NCBP3	Q53F19	620 aa	Known RBP	11.24	□□□□□ -0.61
UBAP2-208	ENST00000459988	PRKCSH	P14314	528 aa	Predicted RBP	11.22	□□□□□ -0.61
UBAP2-208	ENST00000459988	MROH2A	A6NES4	1674 aa		11.22	□□□□□ -0.61
UBAP2-208	ENST00000459988	HSPA1L	P34931	641 aa		11.22	□□□□□ -0.61
UBAP2-208	ENST00000459988	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.21	□□□□□ -0.61
UBAP2-208	ENST00000459988	NPAT	Q14207	1427 aa		11.21	□□□□□ -0.61
UBAP2-208	ENST00000459988	PKD2	Q13563	968 aa		11.21	□□□□□ -0.62
UBAP2-208	ENST00000459988	DENND4B	O75064	1496 aa	Predicted RBP	11.2	□□□□□ -0.62
UBAP2-208	ENST00000459988	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.2	□□□□□ -0.62
UBAP2-208	ENST00000459988	ABCA8	O94911	1581 aa		11.2	□□□□□ -0.62
UBAP2-208	ENST00000459988	AGL	P35573	1532 aa		11.19	□□□□□ -0.62
UBAP2-208	ENST00000459988	DISP1	Q96F81	1524 aa		11.18	□□□□□ -0.62
UBAP2-208	ENST00000459988	SYNM	O15061	1565 aa		11.18	□□□□□ -0.62
UBAP2-208	ENST00000459988	CNTLN	Q9NXG0	1405 aa		11.17	□□□□□ -0.62
UBAP2-208	ENST00000459988	LRP5	O75197	1615 aa		11.17	□□□□□ -0.62
UBAP2-208	ENST00000459988	TRAPPC8	Q9Y2L5	1435 aa		11.17	□□□□□ -0.62
UBAP2-208	ENST00000459988	RNF17	Q9BXT8	1623 aa	Known RBP	11.17	□□□□□ -0.62
UBAP2-208	ENST00000459988	C9orf84	Q5VXU9	1444 aa		11.16	□□□□□ -0.62
UBAP2-208	ENST00000459988	TCOF1	Q13428	1488 aa	Known RBP	11.16	□□□□□ -0.62
UBAP2-208	ENST00000459988	C3	P01024	1663 aa		11.16	□□□□□ -0.62
UBAP2-208	ENST00000459988	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.16	□□□□□ -0.62
UBAP2-208	ENST00000459988	CAMSAP1	Q5T5Y3	1602 aa		11.14	□□□□□ -0.63
UBAP2-208	ENST00000459988	ATP10A	O60312	1499 aa		11.12	□□□□□ -0.63
UBAP2-208	ENST00000459988	RAPGEF2	Q9Y4G8	1499 aa		11.12	□□□□□ -0.63
UBAP2-208	ENST00000459988	SIGLEC1	Q9BZZ2	1709 aa		11.11	□□□□□ -0.63
UBAP2-208	ENST00000459988	RGS17	Q9UGC6	210 aa	Predicted RBP	11.11	□□□□□ -0.63
UBAP2-208	ENST00000459988	GOLGA3	Q08378	1498 aa		11.1	□□□□□ -0.63
UBAP2-208	ENST00000459988	ALK	Q9UM73	1620 aa		11.09	□□□□□ -0.63
UBAP2-208	ENST00000459988	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
UBAP2-208	ENST00000459988	SETD1A	O15047	1707 aa	Known RBP	11.09	□□□□□ -0.63
UBAP2-208	ENST00000459988	POLR1A	O95602	1720 aa	Predicted RBP	11.08	□□□□□ -0.64
UBAP2-208	ENST00000459988	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.05	□□□□□ -0.64
UBAP2-208	ENST00000459988	RAPGEF3	O95398	923 aa		11.05	□□□□□ -0.64
UBAP2-208	ENST00000459988	SHANK2	Q9UPX8	1470 aa		11.04	□□□□□ -0.64
UBAP2-208	ENST00000459988	CDK13	Q14004	1512 aa	Known RBP	11.04	□□□□□ -0.64
UBAP2-208	ENST00000459988	HECW1	Q76N89	1606 aa		11.03	□□□□□ -0.64
UBAP2-208	ENST00000459988	KDM5C	P41229	1560 aa		11.02	□□□□□ -0.65
UBAP2-208	ENST00000459988	MYO3A	Q8NEV4	1616 aa		11.01	□□□□□ -0.65
UBAP2-208	ENST00000459988	DEPDC5	O75140	1603 aa		10.99	□□□□□ -0.65
UBAP2-208	ENST00000459988	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	10.99	□□□□□ -0.65
UBAP2-208	ENST00000459988	RAPGEF6	Q8TEU7	1601 aa		10.99	□□□□□ -0.65
UBAP2-208	ENST00000459988	VWDE	Q8N2E2	1590 aa		10.99	□□□□□ -0.65
UBAP2-208	ENST00000459988	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	10.98	□□□□□ -0.65
UBAP2-208	ENST00000459988	POTEA	Q6S8J7	498 aa		10.98	□□□□□ -0.65
UBAP2-208	ENST00000459988	LRRC7	Q96NW7	1537 aa		10.98	□□□□□ -0.65
UBAP2-208	ENST00000459988	LRRC9	Q6ZRR7	1453 aa		10.98	□□□□□ -0.65
UBAP2-208	ENST00000459988	NHSL1	Q5SYE7	1610 aa		10.97	□□□□□ -0.65
UBAP2-208	ENST00000459988	KIF14	Q15058	1648 aa		10.97	□□□□□ -0.65
UBAP2-208	ENST00000459988	FAM135B	Q49AJ0	1406 aa		10.96	□□□□□ -0.65
UBAP2-208	ENST00000459988	ADRA2B	P18089	450 aa		10.96	□□□□□ -0.65
UBAP2-208	ENST00000459988	IGF1R	P08069	1367 aa		10.96	□□□□□ -0.66
UBAP2-208	ENST00000459988	PPP6R1	Q9UPN7	881 aa		10.96	□□□□□ -0.66
UBAP2-208	ENST00000459988	KIF27	Q86VH2	1401 aa		10.96	□□□□□ -0.66
UBAP2-208	ENST00000459988	FAM9A	Q8IZU1	332 aa	Predicted RBP	10.95	□□□□□ -0.66
UBAP2-208	ENST00000459988	PCDH10	Q9P2E7	1040 aa		10.94	□□□□□ -0.66
UBAP2-208	ENST00000459988	FAM135A	Q9P2D6	1515 aa		10.94	□□□□□ -0.66
UBAP2-208	ENST00000459988	MED14	O60244	1454 aa		10.94	□□□□□ -0.66
UBAP2-208	ENST00000459988	ZNF772	Q68DY9	489 aa	Predicted RBP	10.91	□□□□□ -0.66
UBAP2-208	ENST00000459988	ZRANB1	Q9UGI0	708 aa		10.91	□□□□□ -0.66
UBAP2-208	ENST00000459988	A2ML1	A8K2U0	1454 aa		10.91	□□□□□ -0.66
UBAP2-208	ENST00000459988	NEURL4	Q96JN8	1562 aa		10.91	□□□□□ -0.66
UBAP2-208	ENST00000459988	CTTNBP2	Q8WZ74	1663 aa		10.91	□□□□□ -0.66
UBAP2-208	ENST00000459988	KDM5D	Q9BY66	1539 aa		10.9	□□□□□ -0.67
UBAP2-208	ENST00000459988	ATP10B	O94823	1461 aa		10.89	□□□□□ -0.67
UBAP2-208	ENST00000459988	PIP4K2B	P78356	416 aa		10.88	□□□□□ -0.67
UBAP2-208	ENST00000459988	DIP2C	Q9Y2E4	1556 aa		10.88	□□□□□ -0.67
UBAP2-208	ENST00000459988	SCAF1	Q9H7N4	1312 aa	Known RBP	10.88	□□□□□ -0.67
UBAP2-208	ENST00000459988	TIMELESS	Q9UNS1	1208 aa		10.88	□□□□□ -0.67
UBAP2-208	ENST00000459988	CARMIL1	Q5VZK9	1371 aa		10.87	□□□□□ -0.67
UBAP2-208	ENST00000459988	CCDC125	Q86Z20	511 aa		10.87	□□□□□ -0.67
UBAP2-208	ENST00000459988	KCNH8	Q96L42	1107 aa		10.87	□□□□□ -0.67
UBAP2-208	ENST00000459988	FGD6	Q6ZV73	1430 aa		10.86	□□□□□ -0.67
UBAP2-208	ENST00000459988	ZNF518A	Q6AHZ1	1483 aa		10.86	□□□□□ -0.67
UBAP2-208	ENST00000459988	MLH3	Q9UHC1	1453 aa		10.85	□□□□□ -0.67
UBAP2-208	ENST00000459988	DNMT1	P26358	1616 aa	Known RBP	10.83	□□□□□ -0.67
UBAP2-208	ENST00000459988	SHPRH	Q149N8	1683 aa		10.83	□□□□□ -0.68
UBAP2-208	ENST00000459988	RBM33	Q96EV2	1170 aa	Known RBP	10.83	□□□□□ -0.68
UBAP2-208	ENST00000459988	NWD1	Q149M9	1564 aa		10.83	□□□□□ -0.68
UBAP2-208	ENST00000459988	SPATA31A6	Q5VVP1	1343 aa		10.82	□□□□□ -0.68
UBAP2-208	ENST00000459988	NCKAP5L	Q9HCH0	1330 aa		10.82	□□□□□ -0.68
UBAP2-208	ENST00000459988	JCAD	Q9P266	1359 aa		10.81	□□□□□ -0.68
UBAP2-208	ENST00000459988	ATAD2	Q6PL18	1390 aa		10.81	□□□□□ -0.68
UBAP2-208	ENST00000459988	ESF1	Q9H501	851 aa	Known RBP	10.81	□□□□□ -0.68
UBAP2-208	ENST00000459988	IQGAP1	P46940	1657 aa		10.8	□□□□□ -0.68
UBAP2-208	ENST00000459988	SETBP1	Q9Y6X0	1596 aa		10.79	□□□□□ -0.68
UBAP2-208	ENST00000459988	ABCC3	O15438	1527 aa		10.79	□□□□□ -0.68
UBAP2-208	ENST00000459988	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
UBAP2-208	ENST00000459988	CEBPA	P49715	358 aa	Predicted RBP	10.78	□□□□□ -0.68
UBAP2-208	ENST00000459988	SLC34A2	O95436	690 aa		10.77	□□□□□ -0.68
UBAP2-208	ENST00000459988	ABCA6	Q8N139	1617 aa		10.77	□□□□□ -0.69
UBAP2-208	ENST00000459988	ZBTB22	O15209	634 aa		10.76	□□□□□ -0.69
UBAP2-208	ENST00000459988	PLCH2	O75038	1416 aa		10.76	□□□□□ -0.69
UBAP2-208	ENST00000459988	MYO5C	Q9NQX4	1742 aa		10.75	□□□□□ -0.69
UBAP2-208	ENST00000459988	SCAPER	Q9BY12	1400 aa		10.75	□□□□□ -0.69
UBAP2-208	ENST00000459988	ATP7A	Q04656	1500 aa		10.75	□□□□□ -0.69
UBAP2-208	ENST00000459988	PHLPP1	O60346	1717 aa		10.74	□□□□□ -0.69
UBAP2-208	ENST00000459988	RXRB	P28702	533 aa		10.74	□□□□□ -0.69
UBAP2-208	ENST00000459988	MLEC	Q14165	292 aa		10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms