RNA–Protein interactions for RNA: ENST00000450717.7

SMARCA4-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 5 BASIC

Gene SMARCA4, Length 5,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-205ENST00000450717 HSP90AB1P08238 724 aaKnown RBP16.94■□□□□ 0.3
SMARCA4-205ENST00000450717 ROCK2O75116 1388 aaKnown RBP16.94■□□□□ 0.3
SMARCA4-205ENST00000450717 CFAP44Q96MT7 982 aa16.94■□□□□ 0.3
SMARCA4-205ENST00000450717 SRPK2P78362 688 aaKnown RBP16.93■□□□□ 0.3
SMARCA4-205ENST00000450717 NUP155O75694 1391 aa16.92■□□□□ 0.3
SMARCA4-205ENST00000450717 TDRD9Q8NDG6 1382 aaKnown RBP16.91■□□□□ 0.3
SMARCA4-205ENST00000450717 FOXD1Q16676 465 aa16.9■□□□□ 0.3
SMARCA4-205ENST00000450717 HSCBQ8IWL3 235 aa16.9■□□□□ 0.3
SMARCA4-205ENST00000450717 EIF3AQ14152 1382 aaKnown RBP16.89■□□□□ 0.29
SMARCA4-205ENST00000450717 OS9Q13438 667 aaPredicted RBP16.89■□□□□ 0.29
SMARCA4-205ENST00000450717 EFCAB2Q5VUJ9 269 aa16.89■□□□□ 0.29
SMARCA4-205ENST00000450717 CADPSQ9ULU8 1353 aa16.88■□□□□ 0.29
SMARCA4-205ENST00000450717 CCDC18Q5T9S5 1454 aa16.88■□□□□ 0.29
SMARCA4-205ENST00000450717 HDGFL2Q7Z4V5 671 aaPredicted RBP16.88■□□□□ 0.29
SMARCA4-205ENST00000450717 RCAN3Q9UKA8 241 aa16.87■□□□□ 0.29
SMARCA4-205ENST00000450717 RBM19Q9Y4C8 960 aaKnown RBP16.87■□□□□ 0.29
SMARCA4-205ENST00000450717 IPO8O15397 1037 aaKnown RBP16.86■□□□□ 0.29
SMARCA4-205ENST00000450717 RSPH4AQ5TD94 716 aa16.86■□□□□ 0.29
SMARCA4-205ENST00000450717 FHOD3Q2V2M9 1422 aa16.86■□□□□ 0.29
SMARCA4-205ENST00000450717 LMOD2Q6P5Q4 547 aa16.85■□□□□ 0.29
SMARCA4-205ENST00000450717 CALD1Q05682 793 aaKnown RBP16.85■□□□□ 0.29
SMARCA4-205ENST00000450717 SMARCA4P51532 1647 aa16.84■□□□□ 0.29
SMARCA4-205ENST00000450717 DNTTIP2Q5QJE6 756 aaKnown RBP16.84■□□□□ 0.29
SMARCA4-205ENST00000450717 MCCP23508 829 aa16.84■□□□□ 0.29
SMARCA4-205ENST00000450717 TCERG1O14776 1098 aaKnown RBP16.83■□□□□ 0.28
SMARCA4-205ENST00000450717 GGT6Q6P531 493 aa16.83■□□□□ 0.28
SMARCA4-205ENST00000450717 ATAD2BQ9ULI0 1458 aa16.82■□□□□ 0.28
SMARCA4-205ENST00000450717 KCNJ4P48050 445 aa16.81■□□□□ 0.28
SMARCA4-205ENST00000450717 L1TD1Q5T7N2 865 aaKnown RBP16.81■□□□□ 0.28
SMARCA4-205ENST00000450717 L3MBTL2Q969R5 705 aa16.81■□□□□ 0.28
SMARCA4-205ENST00000450717 GOLGA6L6A8MZA4 724 aa16.81■□□□□ 0.28
SMARCA4-205ENST00000450717 RTF1Q92541 710 aaKnown RBP16.8■□□□□ 0.28
SMARCA4-205ENST00000450717 FGD1P98174 961 aa16.8■□□□□ 0.28
SMARCA4-205ENST00000450717 RWDD1Q9H446 243 aaPredicted RBP16.8■□□□□ 0.28
SMARCA4-205ENST00000450717 SAFB2Q14151 953 aaKnown RBP eCLIP16.79■□□□□ 0.282e-6■□□□□ 10.3
SMARCA4-205ENST00000450717 PDE3BQ13370 1112 aa16.79■□□□□ 0.28
SMARCA4-205ENST00000450717 PHLDB1Q86UU1 1377 aa16.78■□□□□ 0.28
SMARCA4-205ENST00000450717 DHX57Q6P158 1386 aaKnown RBP16.78■□□□□ 0.28
SMARCA4-205ENST00000450717 TPRNQ4KMQ1 711 aa16.77■□□□□ 0.28
SMARCA4-205ENST00000450717 U2AF1L5P0DN76 240 aaPredicted RBP16.77■□□□□ 0.27
SMARCA4-205ENST00000450717 U2AF1Q01081 240 aaKnown RBP eCLIP16.77■□□□□ 0.27
SMARCA4-205ENST00000450717 NLRP13Q86W25 1043 aa16.77■□□□□ 0.27
SMARCA4-205ENST00000450717 STK26Q9P289 416 aa16.77■□□□□ 0.27
SMARCA4-205ENST00000450717 NAP1L5Q96NT1 182 aaPredicted RBP16.77■□□□□ 0.27
SMARCA4-205ENST00000450717 PTMSP20962 102 aa16.76■□□□□ 0.27
SMARCA4-205ENST00000450717 MLECQ14165 292 aa16.76■□□□□ 0.27
SMARCA4-205ENST00000450717 PMFBP1Q8TBY8 1022 aa16.75■□□□□ 0.27
SMARCA4-205ENST00000450717 KIF15Q9NS87 1388 aa16.74■□□□□ 0.27
SMARCA4-205ENST00000450717 NRDCO43847 1150 aa16.74■□□□□ 0.27
SMARCA4-205ENST00000450717 HNRNPMP52272 730 aaKnown RBP eCLIP16.73■□□□□ 0.275e-6■■□□□ 11.8
SMARCA4-205ENST00000450717 GOLGA2Q08379 1002 aa16.73■□□□□ 0.27
SMARCA4-205ENST00000450717 GOLGA6L4A6NEF3 574 aa16.73■□□□□ 0.27
SMARCA4-205ENST00000450717 PLCB2Q00722 1185 aa16.73■□□□□ 0.27
SMARCA4-205ENST00000450717 CHMP4AQ9BY43 222 aa16.72■□□□□ 0.27
SMARCA4-205ENST00000450717 DEKP35659 375 aaKnown RBP16.71■□□□□ 0.27
SMARCA4-205ENST00000450717 ITPRIPQ8IWB1 547 aa16.71■□□□□ 0.27
SMARCA4-205ENST00000450717 SOX12O15370 315 aa16.71■□□□□ 0.27
SMARCA4-205ENST00000450717 TERF2IPQ9NYB0 399 aa16.71■□□□□ 0.27
SMARCA4-205ENST00000450717 SPAG9O60271 1321 aaKnown RBP16.71■□□□□ 0.27
SMARCA4-205ENST00000450717 KIF3BO15066 747 aa16.71■□□□□ 0.27
SMARCA4-205ENST00000450717 GBP4Q96PP9 640 aa16.69■□□□□ 0.26
SMARCA4-205ENST00000450717 MYBBP1AQ9BQG0 1328 aaKnown RBP16.69■□□□□ 0.26
SMARCA4-205ENST00000450717 NPHP1O15259 732 aa16.69■□□□□ 0.26
SMARCA4-205ENST00000450717 RUSC2Q8N2Y8 1516 aa16.68■□□□□ 0.26
SMARCA4-205ENST00000450717 NAP1L2Q9ULW6 460 aaPredicted RBP16.68■□□□□ 0.26
SMARCA4-205ENST00000450717 CCDC144AA2RUR9 1427 aa16.66■□□□□ 0.26
SMARCA4-205ENST00000450717 FANCD2Q9BXW9 1451 aa16.66■□□□□ 0.26
SMARCA4-205ENST00000450717 RTN4Q9NQC3 1192 aaKnown RBP16.66■□□□□ 0.26
SMARCA4-205ENST00000450717 TSHZ2Q9NRE2 1034 aa16.66■□□□□ 0.26
SMARCA4-205ENST00000450717 KIAA1211Q6ZU35 1233 aa16.66■□□□□ 0.26
SMARCA4-205ENST00000450717 MSNP26038 577 aaKnown RBP16.65■□□□□ 0.26
SMARCA4-205ENST00000450717 SPRYD3Q8NCJ5 442 aa16.65■□□□□ 0.26
SMARCA4-205ENST00000450717 UACAQ9BZF9 1416 aa16.65■□□□□ 0.26
SMARCA4-205ENST00000450717 JPH4Q96JJ6 628 aa16.65■□□□□ 0.26
SMARCA4-205ENST00000450717 CENPJQ9HC77 1338 aaPredicted RBP16.65■□□□□ 0.26
SMARCA4-205ENST00000450717 CHAF1AQ13111 956 aaPredicted RBP16.64■□□□□ 0.25
SMARCA4-205ENST00000450717 SMC4Q9NTJ3 1288 aa16.64■□□□□ 0.25
SMARCA4-205ENST00000450717 LMOD3Q0VAK6 560 aa16.64■□□□□ 0.25
SMARCA4-205ENST00000450717 IPO9Q96P70 1041 aaKnown RBP16.64■□□□□ 0.25
SMARCA4-205ENST00000450717 STK31Q9BXU1 1019 aa16.62■□□□□ 0.25
SMARCA4-205ENST00000450717 HDAC5Q9UQL6 1122 aa16.61■□□□□ 0.25
SMARCA4-205ENST00000450717 HMMRO75330 724 aa16.61■□□□□ 0.25
SMARCA4-205ENST00000450717 WASHC2CQ9Y4E1 1318 aa16.61■□□□□ 0.25
SMARCA4-205ENST00000450717 APBB1O00213 710 aa16.6■□□□□ 0.25
SMARCA4-205ENST00000450717 ST20-MTHFSA0A0A6YYL1 179 aa16.59■□□□□ 0.25
SMARCA4-205ENST00000450717 TAOK2Q9UL54 1235 aa16.59■□□□□ 0.25
SMARCA4-205ENST00000450717 CCDC146Q8IYE0 955 aa16.59■□□□□ 0.25
SMARCA4-205ENST00000450717 PAK3O75914 559 aaPredicted RBP16.58■□□□□ 0.25
SMARCA4-205ENST00000450717 PRKRIP1Q9H875 184 aaPredicted RBP16.58■□□□□ 0.25
SMARCA4-205ENST00000450717 ZBED9Q6R2W3 1325 aa16.58■□□□□ 0.24
SMARCA4-205ENST00000450717 TULP1O00294 542 aaPredicted RBP16.57■□□□□ 0.24
SMARCA4-205ENST00000450717 CUX1P39880 1505 aa16.57■□□□□ 0.24
SMARCA4-205ENST00000450717 PANK3Q9H999 370 aa16.57■□□□□ 0.24
SMARCA4-205ENST00000450717 USP47Q96K76 1375 aa16.57■□□□□ 0.24
SMARCA4-205ENST00000450717 TRHP20396 242 aaPredicted RBP16.57■□□□□ 0.24
SMARCA4-205ENST00000450717 HTATSF1O43719 755 aaKnown RBP16.56■□□□□ 0.24
SMARCA4-205ENST00000450717 SYAP1Q96A49 352 aaPredicted RBP16.56■□□□□ 0.24
SMARCA4-205ENST00000450717 MFAP1P55081 439 aaKnown RBP16.56■□□□□ 0.24
SMARCA4-205ENST00000450717 GPATCH3Q96I76 525 aa16.56■□□□□ 0.24
SMARCA4-205ENST00000450717 SLKQ9H2G2 1235 aaPredicted RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms