RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NOP58Q9Y2X3 529 aaKnown RBP15.91■□□□□ 0.14
MSH6-204ENST00000445503 EFCAB5A4FU69 1503 aa15.91■□□□□ 0.14
MSH6-204ENST00000445503 PDS5BQ9NTI5 1447 aa15.91■□□□□ 0.14
MSH6-204ENST00000445503 CNTLNQ9NXG0 1405 aa15.91■□□□□ 0.14
MSH6-204ENST00000445503 ERICH6BQ5W0A0 696 aa15.9■□□□□ 0.14
MSH6-204ENST00000445503 ZBED9Q6R2W3 1325 aa15.9■□□□□ 0.14
MSH6-204ENST00000445503 ABCA10Q8WWZ4 1543 aa15.89■□□□□ 0.13
MSH6-204ENST00000445503 CC2D2AQ9P2K1 1620 aa15.88■□□□□ 0.13
MSH6-204ENST00000445503 FANCIQ9NVI1 1328 aa15.87■□□□□ 0.13
MSH6-204ENST00000445503 NUDCQ9Y266 331 aa15.87■□□□□ 0.13
MSH6-204ENST00000445503 CC2D1BQ5T0F9 858 aaKnown RBP15.87■□□□□ 0.13
MSH6-204ENST00000445503 DEKP35659 375 aaKnown RBP15.86■□□□□ 0.13
MSH6-204ENST00000445503 DNMBPQ6XZF7 1577 aa15.85■□□□□ 0.13
MSH6-204ENST00000445503 NUP155O75694 1391 aa15.84■□□□□ 0.13
MSH6-204ENST00000445503 ST20-MTHFSA0A0A6YYL1 179 aa15.84■□□□□ 0.13
MSH6-204ENST00000445503 PTPN23Q9H3S7 1636 aa15.84■□□□□ 0.13
MSH6-204ENST00000445503 USP47Q96K76 1375 aa15.83■□□□□ 0.12
MSH6-204ENST00000445503 LAS1LQ9Y4W2 734 aaKnown RBP15.82■□□□□ 0.12
MSH6-204ENST00000445503 CDK13Q14004 1512 aaKnown RBP15.81■□□□□ 0.12
MSH6-204ENST00000445503 AKNAQ7Z591 1439 aa15.8■□□□□ 0.12
MSH6-204ENST00000445503 HNRNPMP52272 730 aaKnown RBP eCLIP15.8■□□□□ 0.12
MSH6-204ENST00000445503 EHBP1L1Q8N3D4 1523 aa15.79■□□□□ 0.12
MSH6-204ENST00000445503 CFAP43Q8NDM7 1665 aa15.77■□□□□ 0.12
MSH6-204ENST00000445503 SUPT6HQ7KZ85 1726 aaKnown RBP15.77■□□□□ 0.11
MSH6-204ENST00000445503 RCAN3Q9UKA8 241 aa15.76■□□□□ 0.11
MSH6-204ENST00000445503 ANKRD30AQ9BXX3 1397 aa15.76■□□□□ 0.11
MSH6-204ENST00000445503 EXOC6Q8TAG9 804 aa15.75■□□□□ 0.11
MSH6-204ENST00000445503 URB2Q14146 1524 aaKnown RBP15.75■□□□□ 0.11
MSH6-204ENST00000445503 SNAPC4Q5SXM2 1469 aa15.75■□□□□ 0.11
MSH6-204ENST00000445503 PAK3O75914 559 aaPredicted RBP15.75■□□□□ 0.11
MSH6-204ENST00000445503 WDR43Q15061 677 aaKnown RBP eCLIP15.74■□□□□ 0.112e-9■□□□□ 9.3
MSH6-204ENST00000445503 ANKRD30BQ9BXX2 1392 aa15.74■□□□□ 0.11
MSH6-204ENST00000445503 EPRSP07814 1512 aaKnown RBP15.74■□□□□ 0.11
MSH6-204ENST00000445503 PLIN1O60240 522 aa15.73■□□□□ 0.11
MSH6-204ENST00000445503 ROCK2O75116 1388 aaKnown RBP15.73■□□□□ 0.11
MSH6-204ENST00000445503 GRIN2BQ13224 1484 aa15.72■□□□□ 0.11
MSH6-204ENST00000445503 IPO9Q96P70 1041 aaKnown RBP15.72■□□□□ 0.11
MSH6-204ENST00000445503 CUL7Q14999 1698 aa15.71■□□□□ 0.11
MSH6-204ENST00000445503 NCOA1Q15788 1441 aa15.71■□□□□ 0.11
MSH6-204ENST00000445503 JPH4Q96JJ6 628 aa15.71■□□□□ 0.1
MSH6-204ENST00000445503 DAPK1P53355 1430 aa15.7■□□□□ 0.1
MSH6-204ENST00000445503 PRG4Q92954 1404 aaPredicted RBP15.7■□□□□ 0.1
MSH6-204ENST00000445503 CANXP27824 592 aaKnown RBP15.7■□□□□ 0.1
MSH6-204ENST00000445503 MIA2Q96PC5 1412 aa15.7■□□□□ 0.1
MSH6-204ENST00000445503 PRDM2Q13029 1718 aa15.7■□□□□ 0.1
MSH6-204ENST00000445503 RALBP1Q15311 655 aa15.69■□□□□ 0.1
MSH6-204ENST00000445503 NEFMP07197 916 aa15.69■□□□□ 0.1
MSH6-204ENST00000445503 PNISRQ8TF01 805 aaKnown RBP15.68■□□□□ 0.1
MSH6-204ENST00000445503 RTN4Q9NQC3 1192 aaKnown RBP15.68■□□□□ 0.1
MSH6-204ENST00000445503 MYBBP1AQ9BQG0 1328 aaKnown RBP15.67■□□□□ 0.1
MSH6-204ENST00000445503 KTN1Q86UP2 1357 aaKnown RBP15.67■□□□□ 0.1
MSH6-204ENST00000445503 KIF15Q9NS87 1388 aa15.67■□□□□ 0.1
MSH6-204ENST00000445503 ABCC5O15440 1437 aa15.67■□□□□ 0.1
MSH6-204ENST00000445503 RRP1P56182 461 aaKnown RBP15.67■□□□□ 0.1
MSH6-204ENST00000445503 NLRP13Q86W25 1043 aa15.66■□□□□ 0.1
MSH6-204ENST00000445503 KNSTRNQ9Y448 316 aa15.66■□□□□ 0.1
MSH6-204ENST00000445503 CDCA7LQ96GN5 454 aa15.66■□□□□ 0.1
MSH6-204ENST00000445503 CHGAP10645 457 aaKnown RBP15.65■□□□□ 0.1
MSH6-204ENST00000445503 UGGT2Q9NYU1 1516 aa15.65■□□□□ 0.1
MSH6-204ENST00000445503 RGS3P49796 1198 aa15.65■□□□□ 0.1
MSH6-204ENST00000445503 ANKRD50Q9ULJ7 1429 aa15.64■□□□□ 0.09
MSH6-204ENST00000445503 HECW1Q76N89 1606 aa15.63■□□□□ 0.09
MSH6-204ENST00000445503 SENP3Q9H4L4 574 aaPredicted RBP15.63■□□□□ 0.09
MSH6-204ENST00000445503 PANK3Q9H999 370 aa15.63■□□□□ 0.09
MSH6-204ENST00000445503 RPRD2Q5VT52 1461 aaKnown RBP15.63■□□□□ 0.09
MSH6-204ENST00000445503 THOC2Q8NI27 1593 aaKnown RBP15.62■□□□□ 0.09
MSH6-204ENST00000445503 TMF1P82094 1093 aa15.62■□□□□ 0.09
MSH6-204ENST00000445503 NBPF1Q3BBV0 1214 aa15.62■□□□□ 0.09
MSH6-204ENST00000445503 ERCC6Q03468 1493 aa15.62■□□□□ 0.09
MSH6-204ENST00000445503 CTTNBP2Q8WZ74 1663 aa15.62■□□□□ 0.09
MSH6-204ENST00000445503 PDE4AP27815 886 aa15.61■□□□□ 0.09
MSH6-204ENST00000445503 CARMIL2Q6F5E8 1435 aa15.61■□□□□ 0.09
MSH6-204ENST00000445503 MAGI3Q5TCQ9 1506 aa15.61■□□□□ 0.09
MSH6-204ENST00000445503 TCERG1O14776 1098 aaKnown RBP15.61■□□□□ 0.09
MSH6-204ENST00000445503 SMG6Q86US8 1419 aaKnown RBP15.6■□□□□ 0.09
MSH6-204ENST00000445503 KIAA1107Q9UPP5 1409 aa15.6■□□□□ 0.09
MSH6-204ENST00000445503 NEUROD2Q15784 382 aa15.59■□□□□ 0.09
MSH6-204ENST00000445503 SKAP1Q86WV1 359 aa15.59■□□□□ 0.09
MSH6-204ENST00000445503 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.59■□□□□ 0.09
MSH6-204ENST00000445503 CRBNQ96SW2 442 aa15.59■□□□□ 0.09
MSH6-204ENST00000445503 ROCK1Q13464 1354 aa15.59■□□□□ 0.09
MSH6-204ENST00000445503 IQGAP2Q13576 1575 aa15.58■□□□□ 0.09
MSH6-204ENST00000445503 SLC4A3P48751 1232 aa15.58■□□□□ 0.08
MSH6-204ENST00000445503 KDM6BO15054 1643 aa15.57■□□□□ 0.08
MSH6-204ENST00000445503 TNNT2P45379 298 aaPredicted RBP15.57■□□□□ 0.08
MSH6-204ENST00000445503 CCDC146Q8IYE0 955 aa15.56■□□□□ 0.08
MSH6-204ENST00000445503 TROQ12816 1431 aaPredicted RBP15.54■□□□□ 0.08
MSH6-204ENST00000445503 CCDC144AA2RUR9 1427 aa15.54■□□□□ 0.08
MSH6-204ENST00000445503 PDE3BQ13370 1112 aa15.54■□□□□ 0.08
MSH6-204ENST00000445503 TCOF1Q13428 1488 aaKnown RBP15.53■□□□□ 0.08
MSH6-204ENST00000445503 DDRGK1Q96HY6 314 aa15.53■□□□□ 0.08
MSH6-204ENST00000445503 ARID4BQ4LE39 1312 aaPredicted RBP15.53■□□□□ 0.08
MSH6-204ENST00000445503 PLB1Q6P1J6 1458 aa15.53■□□□□ 0.08
MSH6-204ENST00000445503 ZNF608Q9ULD9 1512 aaPredicted RBP15.52■□□□□ 0.08
MSH6-204ENST00000445503 LAMC3Q9Y6N6 1575 aa15.52■□□□□ 0.08
MSH6-204ENST00000445503 PPM1GO15355 546 aaPredicted RBP15.52■□□□□ 0.08
MSH6-204ENST00000445503 ARXQ96QS3 562 aa15.52■□□□□ 0.08
MSH6-204ENST00000445503 BRD4O60885 1362 aaPredicted RBP15.52■□□□□ 0.07
MSH6-204ENST00000445503 FRAT1Q92837 279 aaPredicted RBP15.5■□□□□ 0.07
MSH6-204ENST00000445503 CAMSAP2Q08AD1 1489 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms