RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 ADAMTS12P58397 1594 aa18.82■□□□□ 0.6
HERPUD1-204ENST00000439977 PBRM1Q86U86 1689 aa18.82■□□□□ 0.6
HERPUD1-204ENST00000439977 POLR3GLQ9BT43 218 aa18.81■□□□□ 0.6
HERPUD1-204ENST00000439977 MRC2Q9UBG0 1479 aa18.81■□□□□ 0.6
HERPUD1-204ENST00000439977 WDR62O43379 1518 aa18.81■□□□□ 0.6
HERPUD1-204ENST00000439977 DAPK1P53355 1430 aa18.79■□□□□ 0.6
HERPUD1-204ENST00000439977 CFDP1Q9UEE9 299 aaPredicted RBP18.79■□□□□ 0.6
HERPUD1-204ENST00000439977 ABCC5O15440 1437 aa18.79■□□□□ 0.6
HERPUD1-204ENST00000439977 CDK11AQ9UQ88 783 aaPredicted RBP18.78■□□□□ 0.6
HERPUD1-204ENST00000439977 CHMP7Q8WUX9 453 aaPredicted RBP18.78■□□□□ 0.6
HERPUD1-204ENST00000439977 PRG4Q92954 1404 aaPredicted RBP18.78■□□□□ 0.6
HERPUD1-204ENST00000439977 ANKRD30BQ9BXX2 1392 aa18.77■□□□□ 0.59
HERPUD1-204ENST00000439977 NUP153P49790 1475 aaKnown RBP18.76■□□□□ 0.59
HERPUD1-204ENST00000439977 DISP1Q96F81 1524 aa18.76■□□□□ 0.59
HERPUD1-204ENST00000439977 SENP3-EIF4A1A0A087X0R7 540 aa18.75■□□□□ 0.59
HERPUD1-204ENST00000439977 MRS2Q9HD23 443 aa18.75■□□□□ 0.59
HERPUD1-204ENST00000439977 AKNAQ7Z591 1439 aa18.74■□□□□ 0.59
HERPUD1-204ENST00000439977 PRKRIP1Q9H875 184 aaPredicted RBP18.74■□□□□ 0.59
HERPUD1-204ENST00000439977 RBM19Q9Y4C8 960 aaKnown RBP18.73■□□□□ 0.59
HERPUD1-204ENST00000439977 CCDC7Q96M83 1385 aa18.73■□□□□ 0.59
HERPUD1-204ENST00000439977 GCC2Q8IWJ2 1684 aa18.73■□□□□ 0.59
HERPUD1-204ENST00000439977 KIAA0586Q9BVV6 1533 aa18.73■□□□□ 0.59
HERPUD1-204ENST00000439977 CNTLNQ9NXG0 1405 aa18.71■□□□□ 0.59
HERPUD1-204ENST00000439977 PLB1Q6P1J6 1458 aa18.71■□□□□ 0.59
HERPUD1-204ENST00000439977 KIF7Q2M1P5 1343 aa18.71■□□□□ 0.59
HERPUD1-204ENST00000439977 IFT140Q96RY7 1462 aa18.7■□□□□ 0.58
HERPUD1-204ENST00000439977 ROCK1Q13464 1354 aa18.69■□□□□ 0.58
HERPUD1-204ENST00000439977 RPRD2Q5VT52 1461 aaKnown RBP18.69■□□□□ 0.58
HERPUD1-204ENST00000439977 PKD2Q13563 968 aa18.68■□□□□ 0.58
HERPUD1-204ENST00000439977 KIAA0556O60303 1618 aa18.68■□□□□ 0.58
HERPUD1-204ENST00000439977 GRIN2AQ12879 1464 aa18.67■□□□□ 0.58
HERPUD1-204ENST00000439977 NCOA1Q15788 1441 aa18.67■□□□□ 0.58
HERPUD1-204ENST00000439977 JPH4Q96JJ6 628 aa18.66■□□□□ 0.58
HERPUD1-204ENST00000439977 TEX14Q8IWB6 1497 aa18.64■□□□□ 0.57
HERPUD1-204ENST00000439977 ANP32EQ9BTT0 268 aa18.64■□□□□ 0.57
HERPUD1-204ENST00000439977 TROQ12816 1431 aaPredicted RBP18.62■□□□□ 0.57
HERPUD1-204ENST00000439977 KDM2AQ9Y2K7 1162 aa18.62■□□□□ 0.57
HERPUD1-204ENST00000439977 RAPGEF6Q8TEU7 1601 aa18.62■□□□□ 0.57
HERPUD1-204ENST00000439977 ERCC6Q03468 1493 aa18.62■□□□□ 0.57
HERPUD1-204ENST00000439977 DNMT1P26358 1616 aaKnown RBP18.62■□□□□ 0.57
HERPUD1-204ENST00000439977 CAMSAP2Q08AD1 1489 aa18.61■□□□□ 0.57
HERPUD1-204ENST00000439977 GPATCH8Q9UKJ3 1502 aaKnown RBP18.6■□□□□ 0.57
HERPUD1-204ENST00000439977 PZPP20742 1482 aa18.6■□□□□ 0.57
HERPUD1-204ENST00000439977 PLEKHD1A6NEE1 506 aa18.59■□□□□ 0.57
HERPUD1-204ENST00000439977 SPATA31E1Q6ZUB1 1445 aa18.59■□□□□ 0.57
HERPUD1-204ENST00000439977 EIF4G3O43432 1585 aaKnown RBP18.58■□□□□ 0.57
HERPUD1-204ENST00000439977 HNRNPMP52272 730 aaKnown RBP eCLIP18.57■□□□□ 0.56
HERPUD1-204ENST00000439977 B4GALNT3Q6L9W6 998 aa18.56■□□□□ 0.56
HERPUD1-204ENST00000439977 KIF14Q15058 1648 aa18.56■□□□□ 0.56
HERPUD1-204ENST00000439977 NUP155O75694 1391 aa18.56■□□□□ 0.56
HERPUD1-204ENST00000439977 USP47Q96K76 1375 aa18.55■□□□□ 0.56
HERPUD1-204ENST00000439977 ANKRD30AQ9BXX3 1397 aa18.54■□□□□ 0.56
HERPUD1-204ENST00000439977 ANKRD50Q9ULJ7 1429 aa18.53■□□□□ 0.56
HERPUD1-204ENST00000439977 KIAA1107Q9UPP5 1409 aa18.53■□□□□ 0.56
HERPUD1-204ENST00000439977 CEP170Q5SW79 1584 aa18.53■□□□□ 0.56
HERPUD1-204ENST00000439977 TSPY4P0CV99 314 aa18.52■□□□□ 0.56
HERPUD1-204ENST00000439977 TSPY10P0CW01 314 aa18.52■□□□□ 0.56
HERPUD1-204ENST00000439977 CARD11Q9BXL7 1154 aa18.52■□□□□ 0.56
HERPUD1-204ENST00000439977 ZBED9Q6R2W3 1325 aa18.51■□□□□ 0.55
HERPUD1-204ENST00000439977 CARMIL2Q6F5E8 1435 aa18.51■□□□□ 0.55
HERPUD1-204ENST00000439977 DCAF11Q8TEB1 546 aa18.5■□□□□ 0.55
HERPUD1-204ENST00000439977 SYNJ2O15056 1496 aa18.5■□□□□ 0.55
HERPUD1-204ENST00000439977 PPP4R2Q9NY27 417 aa18.49■□□□□ 0.55
HERPUD1-204ENST00000439977 MSH5O43196 834 aa18.48■□□□□ 0.55
HERPUD1-204ENST00000439977 ST20-MTHFSA0A0A6YYL1 179 aa18.47■□□□□ 0.55
HERPUD1-204ENST00000439977 DHX29Q7Z478 1369 aaKnown RBP18.47■□□□□ 0.55
HERPUD1-204ENST00000439977 MAGI1Q96QZ7 1491 aaPredicted RBP18.46■□□□□ 0.55
HERPUD1-204ENST00000439977 RGL3Q3MIN7 710 aa18.46■□□□□ 0.55
HERPUD1-204ENST00000439977 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.45■□□□□ 0.545e-8■□□□□ 9.6
HERPUD1-204ENST00000439977 ATP10BO94823 1461 aa18.44■□□□□ 0.54
HERPUD1-204ENST00000439977 C9orf84Q5VXU9 1444 aa18.44■□□□□ 0.54
HERPUD1-204ENST00000439977 TMC1Q8TDI8 760 aa18.44■□□□□ 0.54
HERPUD1-204ENST00000439977 SALL2Q9Y467 1007 aaPredicted RBP18.42■□□□□ 0.54
HERPUD1-204ENST00000439977 KIF15Q9NS87 1388 aa18.41■□□□□ 0.54
HERPUD1-204ENST00000439977 MBD5Q9P267 1494 aa18.41■□□□□ 0.54
HERPUD1-204ENST00000439977 BCORL1Q5H9F3 1711 aa18.41■□□□□ 0.54
HERPUD1-204ENST00000439977 ADGRL2O95490 1459 aa18.41■□□□□ 0.54
HERPUD1-204ENST00000439977 NUP160Q12769 1436 aa18.39■□□□□ 0.53
HERPUD1-204ENST00000439977 ITSN2Q9NZM3 1697 aa18.38■□□□□ 0.53
HERPUD1-204ENST00000439977 PNISRQ8TF01 805 aaKnown RBP18.37■□□□□ 0.53
HERPUD1-204ENST00000439977 ERICH6BQ5W0A0 696 aa18.36■□□□□ 0.53
HERPUD1-204ENST00000439977 ABCC10Q5T3U5 1492 aa18.36■□□□□ 0.53
HERPUD1-204ENST00000439977 NBPF1Q3BBV0 1214 aa18.36■□□□□ 0.53
HERPUD1-204ENST00000439977 PTPRGP23470 1445 aa18.35■□□□□ 0.53
HERPUD1-204ENST00000439977 ROCK2O75116 1388 aaKnown RBP18.34■□□□□ 0.53
HERPUD1-204ENST00000439977 ADGBQ8N7X0 1667 aa18.34■□□□□ 0.53
HERPUD1-204ENST00000439977 NUDCQ9Y266 331 aa18.34■□□□□ 0.53
HERPUD1-204ENST00000439977 KDM5CP41229 1560 aa18.31■□□□□ 0.52
HERPUD1-204ENST00000439977 CDC42BPAQ5VT25 1732 aa18.31■□□□□ 0.52
HERPUD1-204ENST00000439977 ADCY10Q96PN6 1610 aa18.3■□□□□ 0.52
HERPUD1-204ENST00000439977 ABCA8O94911 1581 aa18.3■□□□□ 0.52
HERPUD1-204ENST00000439977 ERICH6Q7L0X2 663 aa18.3■□□□□ 0.52
HERPUD1-204ENST00000439977 CROCC2H7BZ55 1655 aa18.3■□□□□ 0.52
HERPUD1-204ENST00000439977 CCDC136Q96JN2 1154 aa18.29■□□□□ 0.52
HERPUD1-204ENST00000439977 RALGAPBQ86X10 1494 aa18.29■□□□□ 0.52
HERPUD1-204ENST00000439977 FANCIQ9NVI1 1328 aa18.29■□□□□ 0.52
HERPUD1-204ENST00000439977 UHRF1BP1Q6BDS2 1440 aa18.29■□□□□ 0.52
HERPUD1-204ENST00000439977 SMG6Q86US8 1419 aaKnown RBP18.28■□□□□ 0.52
HERPUD1-204ENST00000439977 ARID4BQ4LE39 1312 aaPredicted RBP18.28■□□□□ 0.52
HERPUD1-204ENST00000439977 CC2D1BQ5T0F9 858 aaKnown RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms