RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 APLP2Q06481 763 aa16.52■□□□□ 0.24
MCF2L-216ENST00000439475 MYT1LQ9UL68 1186 aa16.52■□□□□ 0.24
MCF2L-216ENST00000439475 CCNB3Q8WWL7 1395 aa16.51■□□□□ 0.23
MCF2L-216ENST00000439475 RICTORQ6R327 1708 aa16.5■□□□□ 0.23
MCF2L-216ENST00000439475 ARID4BQ4LE39 1312 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-216ENST00000439475 MAGI2Q86UL8 1455 aa16.5■□□□□ 0.23
MCF2L-216ENST00000439475 CFDP1Q9UEE9 299 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-216ENST00000439475 ZNF777Q9ULD5 760 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-216ENST00000439475 CDC42BPBQ9Y5S2 1711 aa16.49■□□□□ 0.23
MCF2L-216ENST00000439475 FRMPD1Q5SYB0 1578 aa16.48■□□□□ 0.23
MCF2L-216ENST00000439475 EHBP1L1Q8N3D4 1523 aa16.48■□□□□ 0.23
MCF2L-216ENST00000439475 PREX2Q70Z35 1606 aa16.48■□□□□ 0.23
MCF2L-216ENST00000439475 POGZQ7Z3K3 1410 aa16.47■□□□□ 0.23
MCF2L-216ENST00000439475 GPATCH8Q9UKJ3 1502 aaKnown RBP16.47■□□□□ 0.23
MCF2L-216ENST00000439475 CDC42BPAQ5VT25 1732 aa16.46■□□□□ 0.23
MCF2L-216ENST00000439475 AFAP1Q8N556 730 aa16.46■□□□□ 0.23
MCF2L-216ENST00000439475 ZNF518AQ6AHZ1 1483 aa16.46■□□□□ 0.23
MCF2L-216ENST00000439475 ZMYM4Q5VZL5 1548 aa16.45■□□□□ 0.22
MCF2L-216ENST00000439475 ZFYVE16Q7Z3T8 1539 aa16.44■□□□□ 0.22
MCF2L-216ENST00000439475 TIAM1Q13009 1591 aa16.43■□□□□ 0.22
MCF2L-216ENST00000439475 PLEKHH2Q8IVE3 1493 aa16.42■□□□□ 0.22
MCF2L-216ENST00000439475 MAP3K1Q13233 1512 aa16.41■□□□□ 0.22
MCF2L-216ENST00000439475 ARHGEF40Q8TER5 1519 aa16.41■□□□□ 0.22
MCF2L-216ENST00000439475 SUPT6HQ7KZ85 1726 aaKnown RBP16.4■□□□□ 0.22
MCF2L-216ENST00000439475 YEATS2Q9ULM3 1422 aa16.4■□□□□ 0.22
MCF2L-216ENST00000439475 HNRNPMP52272 730 aaKnown RBP eCLIP16.4■□□□□ 0.22
MCF2L-216ENST00000439475 ATP10AO60312 1499 aa16.4■□□□□ 0.22
MCF2L-216ENST00000439475 ABCC1P33527 1531 aa16.4■□□□□ 0.22
MCF2L-216ENST00000439475 KIAA1107Q9UPP5 1409 aa16.39■□□□□ 0.21
MCF2L-216ENST00000439475 TRAPPC8Q9Y2L5 1435 aa16.38■□□□□ 0.21
MCF2L-216ENST00000439475 ITSN2Q9NZM3 1697 aa16.38■□□□□ 0.21
MCF2L-216ENST00000439475 LRRC9Q6ZRR7 1453 aa16.38■□□□□ 0.21
MCF2L-216ENST00000439475 NCOA2Q15596 1464 aa16.37■□□□□ 0.21
MCF2L-216ENST00000439475 MLH3Q9UHC1 1453 aa16.37■□□□□ 0.21
MCF2L-216ENST00000439475 RSPH4AQ5TD94 716 aa16.37■□□□□ 0.21
MCF2L-216ENST00000439475 KDM5CP41229 1560 aa16.37■□□□□ 0.21
MCF2L-216ENST00000439475 SPAG9O60271 1321 aaKnown RBP16.37■□□□□ 0.21
MCF2L-216ENST00000439475 C9orf84Q5VXU9 1444 aa16.36■□□□□ 0.21
MCF2L-216ENST00000439475 ARHGEF12Q9NZN5 1544 aa16.36■□□□□ 0.21
MCF2L-216ENST00000439475 SAMD9LQ8IVG5 1584 aa16.36■□□□□ 0.21
MCF2L-216ENST00000439475 KANK4Q5T7N3 995 aaPredicted RBP16.36■□□□□ 0.21
MCF2L-216ENST00000439475 HECW2Q9P2P5 1572 aa16.35■□□□□ 0.21
MCF2L-216ENST00000439475 MLECQ14165 292 aa16.35■□□□□ 0.21
MCF2L-216ENST00000439475 BCORL1Q5H9F3 1711 aa16.34■□□□□ 0.21
MCF2L-216ENST00000439475 SYCP2Q9BX26 1530 aa16.33■□□□□ 0.2
MCF2L-216ENST00000439475 ADAMTSL3P82987 1691 aa16.32■□□□□ 0.2
MCF2L-216ENST00000439475 ZNF644Q9H582 1327 aaPredicted RBP16.32■□□□□ 0.2
MCF2L-216ENST00000439475 TSPY4P0CV99 314 aa16.3■□□□□ 0.2
MCF2L-216ENST00000439475 TSPY10P0CW01 314 aa16.3■□□□□ 0.2
MCF2L-216ENST00000439475 ESF1Q9H501 851 aaKnown RBP16.29■□□□□ 0.2
MCF2L-216ENST00000439475 PTPRMP28827 1452 aa16.29■□□□□ 0.2
MCF2L-216ENST00000439475 DIP2CQ9Y2E4 1556 aa16.28■□□□□ 0.2
MCF2L-216ENST00000439475 REREQ9P2R6 1566 aa16.27■□□□□ 0.2
MCF2L-216ENST00000439475 KIDINS220Q9ULH0 1771 aa16.27■□□□□ 0.2
MCF2L-216ENST00000439475 MIA2Q96PC5 1412 aa16.27■□□□□ 0.19
MCF2L-216ENST00000439475 MBD5Q9P267 1494 aa16.26■□□□□ 0.19
MCF2L-216ENST00000439475 MADDQ8WXG6 1647 aa16.26■□□□□ 0.19
MCF2L-216ENST00000439475 CAMSAP2Q08AD1 1489 aa16.25■□□□□ 0.19
MCF2L-216ENST00000439475 PLPPR3Q6T4P5 718 aa16.25■□□□□ 0.19
MCF2L-216ENST00000439475 ABCA6Q8N139 1617 aa16.25■□□□□ 0.19
MCF2L-216ENST00000439475 RTEL1-TNFRSF6BF6WH68 1400 aa16.25■□□□□ 0.19
MCF2L-216ENST00000439475 MYOM3Q5VTT5 1437 aa16.25■□□□□ 0.19
MCF2L-216ENST00000439475 ATP7AQ04656 1500 aa16.24■□□□□ 0.19
MCF2L-216ENST00000439475 AGLP35573 1532 aa16.24■□□□□ 0.19
MCF2L-216ENST00000439475 RIMS1Q86UR5 1692 aaKnown RBP16.24■□□□□ 0.19
MCF2L-216ENST00000439475 CCDC141Q6ZP82 1450 aa16.23■□□□□ 0.19
MCF2L-216ENST00000439475 SIGLEC1Q9BZZ2 1709 aa16.22■□□□□ 0.19
MCF2L-216ENST00000439475 A2MP01023 1474 aa16.22■□□□□ 0.19
MCF2L-216ENST00000439475 FER1L4A9Z1Z3 1794 aa16.21■□□□□ 0.19
MCF2L-216ENST00000439475 INO80Q9ULG1 1556 aaPredicted RBP16.2■□□□□ 0.18
MCF2L-216ENST00000439475 ARHGEF5Q12774 1597 aa16.19■□□□□ 0.18
MCF2L-216ENST00000439475 GGT6Q6P531 493 aa16.18■□□□□ 0.18
MCF2L-216ENST00000439475 PPP6R1Q9UPN7 881 aa16.18■□□□□ 0.18
MCF2L-216ENST00000439475 ADGBQ8N7X0 1667 aa16.18■□□□□ 0.18
MCF2L-216ENST00000439475 DHX29Q7Z478 1369 aaKnown RBP16.17■□□□□ 0.18
MCF2L-216ENST00000439475 CNTLNQ9NXG0 1405 aa16.16■□□□□ 0.18
MCF2L-216ENST00000439475 CEBPAP49715 358 aaPredicted RBP16.15■□□□□ 0.18
MCF2L-216ENST00000439475 KIF3BO15066 747 aa16.14■□□□□ 0.17
MCF2L-216ENST00000439475 SETD1BQ9UPS6 1966 aaKnown RBP16.13■□□□□ 0.17
MCF2L-216ENST00000439475 PTPN23Q9H3S7 1636 aa16.12■□□□□ 0.17
MCF2L-216ENST00000439475 FGD6Q6ZV73 1430 aa16.12■□□□□ 0.17
MCF2L-216ENST00000439475 PLXNC1O60486 1568 aa16.12■□□□□ 0.17
MCF2L-216ENST00000439475 FAM50AQ14320 339 aaKnown RBP16.11■□□□□ 0.17
MCF2L-216ENST00000439475 MAST1Q9Y2H9 1570 aa16.1■□□□□ 0.17
MCF2L-216ENST00000439475 ZMYM3Q14202 1370 aa16.09■□□□□ 0.17
MCF2L-216ENST00000439475 TCOF1Q13428 1488 aaKnown RBP16.09■□□□□ 0.17
MCF2L-216ENST00000439475 ABCC5O15440 1437 aa16.07■□□□□ 0.16
MCF2L-216ENST00000439475 DAPK1P53355 1430 aa16.06■□□□□ 0.16
MCF2L-216ENST00000439475 WASHC2CQ9Y4E1 1318 aa16.06■□□□□ 0.16
MCF2L-216ENST00000439475 SHANK2Q9UPX8 1470 aa16.05■□□□□ 0.16
MCF2L-216ENST00000439475 RRP7BPQ9NSQ0 103 aa16.05■□□□□ 0.16
MCF2L-216ENST00000439475 MROH2AA6NES4 1674 aa16.05■□□□□ 0.16
MCF2L-216ENST00000439475 C3P01024 1663 aa16.05■□□□□ 0.16
MCF2L-216ENST00000439475 LMTK3Q96Q04 1460 aa16.04■□□□□ 0.16
MCF2L-216ENST00000439475 UHRF1BP1Q6BDS2 1440 aa16.04■□□□□ 0.16
MCF2L-216ENST00000439475 ANKRD30AQ9BXX3 1397 aa16.04■□□□□ 0.16
MCF2L-216ENST00000439475 PPARGC1BQ86YN6 1023 aaKnown RBP16.04■□□□□ 0.16
MCF2L-216ENST00000439475 CHIC2Q9UKJ5 165 aa16.04■□□□□ 0.16
MCF2L-216ENST00000439475 CLTCQ00610 1675 aaKnown RBP16.03■□□□□ 0.16
MCF2L-216ENST00000439475 HSPA2P54652 639 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms