RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 TMF1P82094 1093 aa8.76□□□□□ -1.01
CSDE1-205ENST00000438362 RCAN3Q9UKA8 241 aa8.76□□□□□ -1.01
CSDE1-205ENST00000438362 FANCIQ9NVI1 1328 aa8.76□□□□□ -1.01
CSDE1-205ENST00000438362 KTN1Q86UP2 1357 aaKnown RBP8.76□□□□□ -1.01
CSDE1-205ENST00000438362 EIF5BO60841 1220 aaKnown RBP8.75□□□□□ -1.01
CSDE1-205ENST00000438362 FYCO1Q9BQS8 1478 aa8.75□□□□□ -1.01
CSDE1-205ENST00000438362 ROCK2O75116 1388 aaKnown RBP8.75□□□□□ -1.01
CSDE1-205ENST00000438362 WASHC2AQ641Q2 1341 aa8.74□□□□□ -1.01
CSDE1-205ENST00000438362 BICRAQ9NZM4 1560 aa8.74□□□□□ -1.01
CSDE1-205ENST00000438362 WDR97A6NE52 1622 aa8.74□□□□□ -1.01
CSDE1-205ENST00000438362 PEG3Q9GZU2 1588 aa8.74□□□□□ -1.01
CSDE1-205ENST00000438362 TCERG1O14776 1098 aaKnown RBP8.73□□□□□ -1.01
CSDE1-205ENST00000438362 CCDC7Q96M83 1385 aa8.73□□□□□ -1.01
CSDE1-205ENST00000438362 NCOA2Q15596 1464 aa8.73□□□□□ -1.01
CSDE1-205ENST00000438362 HMGXB3Q12766 1538 aa8.73□□□□□ -1.01
CSDE1-205ENST00000438362 BECN1Q14457 450 aa8.73□□□□□ -1.01
CSDE1-205ENST00000438362 RGS3P49796 1198 aa8.73□□□□□ -1.01
CSDE1-205ENST00000438362 CARMIL2Q6F5E8 1435 aa8.73□□□□□ -1.01
CSDE1-205ENST00000438362 HSP90AA1P07900 732 aaKnown RBP8.72□□□□□ -1.01
CSDE1-205ENST00000438362 NLRP13Q86W25 1043 aa8.72□□□□□ -1.01
CSDE1-205ENST00000438362 GAPVD1Q14C86 1478 aa8.72□□□□□ -1.01
CSDE1-205ENST00000438362 IPO9Q96P70 1041 aaKnown RBP8.72□□□□□ -1.01
CSDE1-205ENST00000438362 CNTLNQ9NXG0 1405 aa8.72□□□□□ -1.01
CSDE1-205ENST00000438362 HFM1A2PYH4 1435 aa8.71□□□□□ -1.01
CSDE1-205ENST00000438362 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.71□□□□□ -1.01
CSDE1-205ENST00000438362 USP47Q96K76 1375 aa8.71□□□□□ -1.02
CSDE1-205ENST00000438362 PDE3BQ13370 1112 aa8.71□□□□□ -1.02
CSDE1-205ENST00000438362 KIF7Q2M1P5 1343 aa8.71□□□□□ -1.02
CSDE1-205ENST00000438362 ST20-MTHFSA0A0A6YYL1 179 aa8.71□□□□□ -1.02
CSDE1-205ENST00000438362 KIF15Q9NS87 1388 aa8.7□□□□□ -1.02
CSDE1-205ENST00000438362 EFCAB5A4FU69 1503 aa8.7□□□□□ -1.02
CSDE1-205ENST00000438362 NPM1P06748 294 aaKnown RBP eCLIP8.7□□□□□ -1.02
CSDE1-205ENST00000438362 ERCC6Q03468 1493 aa8.7□□□□□ -1.02
CSDE1-205ENST00000438362 MYBBP1AQ9BQG0 1328 aaKnown RBP8.7□□□□□ -1.02
CSDE1-205ENST00000438362 CFAP53Q96M91 514 aa8.69□□□□□ -1.02
CSDE1-205ENST00000438362 MAP3K1Q13233 1512 aa8.69□□□□□ -1.02
CSDE1-205ENST00000438362 SLC24A1O60721 1099 aa8.69□□□□□ -1.02
CSDE1-205ENST00000438362 NEUROD2Q15784 382 aa8.69□□□□□ -1.02
CSDE1-205ENST00000438362 ARXQ96QS3 562 aa8.68□□□□□ -1.02
CSDE1-205ENST00000438362 HNRNPMP52272 730 aaKnown RBP eCLIP8.68□□□□□ -1.02
CSDE1-205ENST00000438362 ZNF644Q9H582 1327 aaPredicted RBP8.67□□□□□ -1.02
CSDE1-205ENST00000438362 STAG3Q9UJ98 1225 aa8.67□□□□□ -1.02
CSDE1-205ENST00000438362 ANP32BQ92688 251 aaKnown RBP8.67□□□□□ -1.02
CSDE1-205ENST00000438362 FRAT1Q92837 279 aaPredicted RBP8.67□□□□□ -1.02
CSDE1-205ENST00000438362 RSPH4AQ5TD94 716 aa8.66□□□□□ -1.02
CSDE1-205ENST00000438362 JPH4Q96JJ6 628 aa8.66□□□□□ -1.02
CSDE1-205ENST00000438362 RTN4Q9NQC3 1192 aaKnown RBP8.66□□□□□ -1.02
CSDE1-205ENST00000438362 BIVM-ERCC5R4GMW8 1640 aa8.66□□□□□ -1.02
CSDE1-205ENST00000438362 RRP1P56182 461 aaKnown RBP8.65□□□□□ -1.02
CSDE1-205ENST00000438362 ARID4BQ4LE39 1312 aaPredicted RBP8.65□□□□□ -1.02
CSDE1-205ENST00000438362 NAIPQ13075 1403 aa8.65□□□□□ -1.02
CSDE1-205ENST00000438362 EXOC6Q8TAG9 804 aa8.65□□□□□ -1.03
CSDE1-205ENST00000438362 POLA1P09884 1462 aaPredicted RBP8.64□□□□□ -1.03
CSDE1-205ENST00000438362 TNNT2P45379 298 aaPredicted RBP8.64□□□□□ -1.03
CSDE1-205ENST00000438362 FTSJ3Q8IY81 847 aaKnown RBP8.64□□□□□ -1.03
CSDE1-205ENST00000438362 NBPF8Q3BBV2 869 aa8.64□□□□□ -1.03
CSDE1-205ENST00000438362 PCF11O94913 1555 aaKnown RBP8.64□□□□□ -1.03
CSDE1-205ENST00000438362 EHBP1L1Q8N3D4 1523 aa8.64□□□□□ -1.03
CSDE1-205ENST00000438362 TOPBP1Q92547 1522 aa8.64□□□□□ -1.03
CSDE1-205ENST00000438362 UNC13AQ9UPW8 1703 aa8.63□□□□□ -1.03
CSDE1-205ENST00000438362 PDE4AP27815 886 aa8.63□□□□□ -1.03
CSDE1-205ENST00000438362 GOLGA2Q08379 1002 aa8.63□□□□□ -1.03
CSDE1-205ENST00000438362 CCDC184Q52MB2 194 aa8.63□□□□□ -1.03
CSDE1-205ENST00000438362 CCDC144AA2RUR9 1427 aa8.63□□□□□ -1.03
CSDE1-205ENST00000438362 AQRO60306 1485 aaKnown RBP eCLIP8.62□□□□□ -1.033e-7■■■■□ 24.7
CSDE1-205ENST00000438362 MIA2Q96PC5 1412 aa8.62□□□□□ -1.03
CSDE1-205ENST00000438362 PANK3Q9H999 370 aa8.62□□□□□ -1.03
CSDE1-205ENST00000438362 MAPKBP1O60336 1514 aa8.62□□□□□ -1.03
CSDE1-205ENST00000438362 KANK1Q14678 1352 aa8.62□□□□□ -1.03
CSDE1-205ENST00000438362 MYH16Q9H6N6 1097 aa8.62□□□□□ -1.03
CSDE1-205ENST00000438362 EFCAB2Q5VUJ9 269 aa8.61□□□□□ -1.03
CSDE1-205ENST00000438362 MORC1Q86VD1 984 aa8.61□□□□□ -1.03
CSDE1-205ENST00000438362 PLIN1O60240 522 aa8.6□□□□□ -1.03
CSDE1-205ENST00000438362 MS4A1P11836 297 aa8.6□□□□□ -1.03
CSDE1-205ENST00000438362 MAPK8IP3Q9UPT6 1336 aa8.6□□□□□ -1.03
CSDE1-205ENST00000438362 ABCA10Q8WWZ4 1543 aa8.6□□□□□ -1.03
CSDE1-205ENST00000438362 ANKRD50Q9ULJ7 1429 aa8.6□□□□□ -1.03
CSDE1-205ENST00000438362 NESP48681 1621 aa8.6□□□□□ -1.03
CSDE1-205ENST00000438362 USP35Q9P2H5 1018 aa8.6□□□□□ -1.03
CSDE1-205ENST00000438362 DNMBPQ6XZF7 1577 aa8.59□□□□□ -1.03
CSDE1-205ENST00000438362 ESF1Q9H501 851 aaKnown RBP8.59□□□□□ -1.03
CSDE1-205ENST00000438362 BRD4O60885 1362 aaPredicted RBP8.59□□□□□ -1.03
CSDE1-205ENST00000438362 CRBNQ96SW2 442 aa8.58□□□□□ -1.04
CSDE1-205ENST00000438362 SUPT6HQ7KZ85 1726 aaKnown RBP8.58□□□□□ -1.04
CSDE1-205ENST00000438362 U2SURPO15042 1029 aaKnown RBP8.58□□□□□ -1.04
CSDE1-205ENST00000438362 PPP4R3CPQ6ZMV5 832 aa8.58□□□□□ -1.04
CSDE1-205ENST00000438362 CENPQQ7L2Z9 268 aaPredicted RBP8.58□□□□□ -1.04
CSDE1-205ENST00000438362 CCDC146Q8IYE0 955 aa8.57□□□□□ -1.04
CSDE1-205ENST00000438362 C11orf95C9JLR9 678 aaPredicted RBP8.57□□□□□ -1.04
CSDE1-205ENST00000438362 PNISRQ8TF01 805 aaKnown RBP8.57□□□□□ -1.04
CSDE1-205ENST00000438362 EIF3AQ14152 1382 aaKnown RBP8.57□□□□□ -1.04
CSDE1-205ENST00000438362 AKNAQ7Z591 1439 aa8.57□□□□□ -1.04
CSDE1-205ENST00000438362 GLIPR1L2Q4G1C9 344 aa8.56□□□□□ -1.04
CSDE1-205ENST00000438362 KIAA1107Q9UPP5 1409 aa8.56□□□□□ -1.04
CSDE1-205ENST00000438362 GOLGA6L22H0YM25 854 aa8.56□□□□□ -1.04
CSDE1-205ENST00000438362 NCBP3Q53F19 620 aaKnown RBP8.56□□□□□ -1.04
CSDE1-205ENST00000438362 TRIM44Q96DX7 344 aaPredicted RBP8.56□□□□□ -1.04
CSDE1-205ENST00000438362 SMG6Q86US8 1419 aaKnown RBP8.56□□□□□ -1.04
CSDE1-205ENST00000438362 GRIN2BQ13224 1484 aa8.56□□□□□ -1.04
CSDE1-205ENST00000438362 DAPK1P53355 1430 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms