RNA–Protein interactions for RNA: ENST00000436978.5

PTPN13-204, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS P4 TSL 5 BASIC

Gene PTPN13, Length 8,573 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-204ENST00000436978 MLECQ14165 292 aa20.34■□□□□ 0.85
PTPN13-204ENST00000436978 RTF1Q92541 710 aaKnown RBP20.34■□□□□ 0.85
PTPN13-204ENST00000436978 PTMAP06454 111 aaKnown RBP20.34■□□□□ 0.85
PTPN13-204ENST00000436978 CALD1Q05682 793 aaKnown RBP20.34■□□□□ 0.85
PTPN13-204ENST00000436978 FGD1P98174 961 aa20.33■□□□□ 0.85
PTPN13-204ENST00000436978 RAPGEF2Q9Y4G8 1499 aa20.33■□□□□ 0.84
PTPN13-204ENST00000436978 KCNJ4P48050 445 aa20.32■□□□□ 0.84
PTPN13-204ENST00000436978 MCCP23508 829 aa20.31■□□□□ 0.84
PTPN13-204ENST00000436978 HSP90AB1P08238 724 aaKnown RBP20.3■□□□□ 0.84
PTPN13-204ENST00000436978 EFCAB2Q5VUJ9 269 aa20.29■□□□□ 0.84
PTPN13-204ENST00000436978 CHMP4AQ9BY43 222 aa20.27■□□□□ 0.84
PTPN13-204ENST00000436978 GGT6Q6P531 493 aa20.27■□□□□ 0.84
PTPN13-204ENST00000436978 PKD2Q13563 968 aa20.26■□□□□ 0.83
PTPN13-204ENST00000436978 RSPH4AQ5TD94 716 aa20.25■□□□□ 0.83
PTPN13-204ENST00000436978 CCER2I3L3R5 266 aa20.25■□□□□ 0.83
PTPN13-204ENST00000436978 IPO8O15397 1037 aaKnown RBP20.24■□□□□ 0.83
PTPN13-204ENST00000436978 NUP155O75694 1391 aa20.24■□□□□ 0.83
PTPN13-204ENST00000436978 RGS3P49796 1198 aa20.22■□□□□ 0.83
PTPN13-204ENST00000436978 NRDCO43847 1150 aa20.22■□□□□ 0.83
PTPN13-204ENST00000436978 HSCBQ8IWL3 235 aa20.21■□□□□ 0.83
PTPN13-204ENST00000436978 CADPSQ9ULU8 1353 aa20.21■□□□□ 0.83
PTPN13-204ENST00000436978 RALBP1Q15311 655 aa20.21■□□□□ 0.83
PTPN13-204ENST00000436978 DNTTIP2Q5QJE6 756 aaKnown RBP20.19■□□□□ 0.82
PTPN13-204ENST00000436978 STK26Q9P289 416 aa20.19■□□□□ 0.82
PTPN13-204ENST00000436978 UACAQ9BZF9 1416 aa20.19■□□□□ 0.82
PTPN13-204ENST00000436978 NAP1L2Q9ULW6 460 aaPredicted RBP20.19■□□□□ 0.82
PTPN13-204ENST00000436978 SAFB2Q14151 953 aaKnown RBP eCLIP20.19■□□□□ 0.82
PTPN13-204ENST00000436978 TDRD9Q8NDG6 1382 aaKnown RBP20.18■□□□□ 0.82
PTPN13-204ENST00000436978 EID1Q9Y6B2 187 aa20.18■□□□□ 0.82
PTPN13-204ENST00000436978 SOX12O15370 315 aa20.17■□□□□ 0.82
PTPN13-204ENST00000436978 SPAG9O60271 1321 aaKnown RBP20.17■□□□□ 0.82
PTPN13-204ENST00000436978 RAB3GAP2Q9H2M9 1393 aa20.17■□□□□ 0.82
PTPN13-204ENST00000436978 PAK3O75914 559 aaPredicted RBP20.16■□□□□ 0.82
PTPN13-204ENST00000436978 MPHOSPH9Q99550 1183 aa20.16■□□□□ 0.82
PTPN13-204ENST00000436978 SENP3-EIF4A1A0A087X0R7 540 aa20.15■□□□□ 0.82
PTPN13-204ENST00000436978 TULP1O00294 542 aaPredicted RBP20.15■□□□□ 0.82
PTPN13-204ENST00000436978 HSPA5P11021 654 aaKnown RBP20.15■□□□□ 0.82
PTPN13-204ENST00000436978 GOLGA6L4A6NEF3 574 aa20.14■□□□□ 0.82
PTPN13-204ENST00000436978 TERF2IPQ9NYB0 399 aa20.14■□□□□ 0.81
PTPN13-204ENST00000436978 TPRNQ4KMQ1 711 aa20.13■□□□□ 0.81
PTPN13-204ENST00000436978 FANCD2Q9BXW9 1451 aa20.13■□□□□ 0.81
PTPN13-204ENST00000436978 TMX4Q9H1E5 349 aaPredicted RBP20.12■□□□□ 0.81
PTPN13-204ENST00000436978 ATAD2BQ9ULI0 1458 aa20.11■□□□□ 0.81
PTPN13-204ENST00000436978 KIAA1211Q6ZU35 1233 aa20.11■□□□□ 0.81
PTPN13-204ENST00000436978 HDAC5Q9UQL6 1122 aa20.1■□□□□ 0.81
PTPN13-204ENST00000436978 NOP58Q9Y2X3 529 aaKnown RBP20.1■□□□□ 0.81
PTPN13-204ENST00000436978 FHOD3Q2V2M9 1422 aa20.1■□□□□ 0.81
PTPN13-204ENST00000436978 CSB-PGBD3P0DP91 1061 aa20.1■□□□□ 0.81
PTPN13-204ENST00000436978 PTMSP20962 102 aa20.1■□□□□ 0.81
PTPN13-204ENST00000436978 CUX1P39880 1505 aa20.1■□□□□ 0.81
PTPN13-204ENST00000436978 GPATCH3Q96I76 525 aa20.09■□□□□ 0.81
PTPN13-204ENST00000436978 ERICH6BQ5W0A0 696 aa20.09■□□□□ 0.81
PTPN13-204ENST00000436978 WASHC2CQ9Y4E1 1318 aa20.07■□□□□ 0.8
PTPN13-204ENST00000436978 GNL2Q13823 731 aaKnown RBP20.07■□□□□ 0.8
PTPN13-204ENST00000436978 TAOK2Q9UL54 1235 aa20.06■□□□□ 0.8
PTPN13-204ENST00000436978 PHLDB1Q86UU1 1377 aa20.06■□□□□ 0.8
PTPN13-204ENST00000436978 KIF3BO15066 747 aa20.06■□□□□ 0.8
PTPN13-204ENST00000436978 U2AF1L5P0DN76 240 aaPredicted RBP20.05■□□□□ 0.8
PTPN13-204ENST00000436978 U2AF1Q01081 240 aaKnown RBP eCLIP20.05■□□□□ 0.8
PTPN13-204ENST00000436978 LMOD3Q0VAK6 560 aa20.04■□□□□ 0.8
PTPN13-204ENST00000436978 FOXD1Q16676 465 aa20.04■□□□□ 0.8
PTPN13-204ENST00000436978 KANK4Q5T7N3 995 aaPredicted RBP20.04■□□□□ 0.8
PTPN13-204ENST00000436978 CCDC144AA2RUR9 1427 aa20.03■□□□□ 0.8
PTPN13-204ENST00000436978 PLCB2Q00722 1185 aa20.03■□□□□ 0.8
PTPN13-204ENST00000436978 STK31Q9BXU1 1019 aa20.03■□□□□ 0.8
PTPN13-204ENST00000436978 CHAF1AQ13111 956 aaPredicted RBP20.02■□□□□ 0.8
PTPN13-204ENST00000436978 RWDD1Q9H446 243 aaPredicted RBP20.02■□□□□ 0.8
PTPN13-204ENST00000436978 HNRNPMP52272 730 aaKnown RBP eCLIP20.01■□□□□ 0.79
PTPN13-204ENST00000436978 L1TD1Q5T7N2 865 aaKnown RBP20.01■□□□□ 0.79
PTPN13-204ENST00000436978 ITPRIPQ8IWB1 547 aa20■□□□□ 0.79
PTPN13-204ENST00000436978 PMFBP1Q8TBY8 1022 aa20■□□□□ 0.79
PTPN13-204ENST00000436978 B4GALNT3Q6L9W6 998 aa20■□□□□ 0.79
PTPN13-204ENST00000436978 RCAN3Q9UKA8 241 aa19.98■□□□□ 0.79
PTPN13-204ENST00000436978 HTATSF1O43719 755 aaKnown RBP19.98■□□□□ 0.79
PTPN13-204ENST00000436978 ISY1Q9ULR0 285 aaKnown RBP19.97■□□□□ 0.79
PTPN13-204ENST00000436978 KIF15Q9NS87 1388 aa19.97■□□□□ 0.79
PTPN13-204ENST00000436978 HMMRO75330 724 aa19.96■□□□□ 0.79
PTPN13-204ENST00000436978 NGDNQ8NEJ9 315 aaKnown RBP19.95■□□□□ 0.78
PTPN13-204ENST00000436978 JPH4Q96JJ6 628 aa19.95■□□□□ 0.78
PTPN13-204ENST00000436978 GAPVD1Q14C86 1478 aa19.95■□□□□ 0.78
PTPN13-204ENST00000436978 CLSTN1O94985 981 aa19.94■□□□□ 0.78
PTPN13-204ENST00000436978 TAF7LQ5H9L4 462 aa19.92■□□□□ 0.78
PTPN13-204ENST00000436978 GORABQ5T7V8 394 aa19.92■□□□□ 0.78
PTPN13-204ENST00000436978 DRC7Q8IY82 874 aa19.92■□□□□ 0.78
PTPN13-204ENST00000436978 GBP4Q96PP9 640 aa19.92■□□□□ 0.78
PTPN13-204ENST00000436978 AMPHP49418 695 aa19.91■□□□□ 0.78
PTPN13-204ENST00000436978 KIAA2012Q0VF49 1180 aa19.91■□□□□ 0.78
PTPN13-204ENST00000436978 ZNF330Q9Y3S2 320 aaPredicted RBP19.91■□□□□ 0.78
PTPN13-204ENST00000436978 CCDC9Q9Y3X0 531 aaKnown RBP19.9■□□□□ 0.78
PTPN13-204ENST00000436978 PTPRGP23470 1445 aa19.9■□□□□ 0.78
PTPN13-204ENST00000436978 MSNP26038 577 aaKnown RBP19.9■□□□□ 0.78
PTPN13-204ENST00000436978 SMC4Q9NTJ3 1288 aa19.9■□□□□ 0.78
PTPN13-204ENST00000436978 SYAP1Q96A49 352 aaPredicted RBP19.89■□□□□ 0.77
PTPN13-204ENST00000436978 FGD5Q6ZNL6 1462 aa19.88■□□□□ 0.77
PTPN13-204ENST00000436978 CCDC34Q96HJ3 373 aa19.88■□□□□ 0.77
PTPN13-204ENST00000436978 NAP1L5Q96NT1 182 aaPredicted RBP19.88■□□□□ 0.77
PTPN13-204ENST00000436978 CHMP3Q9Y3E7 222 aa19.88■□□□□ 0.77
PTPN13-204ENST00000436978 NLRP13Q86W25 1043 aa19.87■□□□□ 0.77
PTPN13-204ENST00000436978 APBB1O00213 710 aa19.87■□□□□ 0.77
PTPN13-204ENST00000436978 PDE3BQ13370 1112 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms