RNA–Protein interactions for RNA: ENST00000436978.5

PTPN13-204, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS P4 TSL 5 BASIC

Gene PTPN13, Length 8,573 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-204ENST00000436978 DCAF8L2P0C7V8 631 aa27.38■■□□□ 1.97
PTPN13-204ENST00000436978 NISCHQ9Y2I1 1504 aa26.7■■□□□ 1.86
PTPN13-204ENST00000436978 SUPT5HO00267 1087 aaKnown RBP25.79■■□□□ 1.72
PTPN13-204ENST00000436978 SHROOM4Q9ULL8 1493 aa25.47■■□□□ 1.67
PTPN13-204ENST00000436978 FAM9AQ8IZU1 332 aaPredicted RBP25.03■■□□□ 1.6
PTPN13-204ENST00000436978 APLP2Q06481 763 aa25.02■■□□□ 1.6
PTPN13-204ENST00000436978 PELP1Q8IZL8 1130 aaKnown RBP24.95■■□□□ 1.58
PTPN13-204ENST00000436978 EHMT2Q96KQ7 1210 aa24.85■■□□□ 1.57
PTPN13-204ENST00000436978 TRIM41Q8WV44 630 aa24.12■■□□□ 1.45
PTPN13-204ENST00000436978 TTBK1Q5TCY1 1321 aaPredicted RBP24.06■■□□□ 1.44
PTPN13-204ENST00000436978 ZEB1P37275 1124 aaPredicted RBP24.03■■□□□ 1.44
PTPN13-204ENST00000436978 ATP1B4Q9UN42 357 aaPredicted RBP24■■□□□ 1.43
PTPN13-204ENST00000436978 RANGAP1P46060 587 aaPredicted RBP23.97■■□□□ 1.43
PTPN13-204ENST00000436978 PCGF6Q9BYE7 350 aa23.93■■□□□ 1.42
PTPN13-204ENST00000436978 UBTFP17480 764 aaKnown RBP23.89■■□□□ 1.42
PTPN13-204ENST00000436978 CCER1Q8TC90 406 aaPredicted RBP23.83■■□□□ 1.41
PTPN13-204ENST00000436978 CENPBP07199 599 aaPredicted RBP23.83■■□□□ 1.41
PTPN13-204ENST00000436978 ERICH6Q7L0X2 663 aa23.69■■□□□ 1.38
PTPN13-204ENST00000436978 NEFLP07196 543 aa23.47■■□□□ 1.35
PTPN13-204ENST00000436978 MYT1LQ9UL68 1186 aa23.26■■□□□ 1.31
PTPN13-204ENST00000436978 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.22■■□□□ 1.31
PTPN13-204ENST00000436978 HNRNPUL2Q1KMD3 747 aaKnown RBP23.22■■□□□ 1.31
PTPN13-204ENST00000436978 TRIM26Q12899 539 aaPredicted RBP23.19■■□□□ 1.3
PTPN13-204ENST00000436978 YTHDC1Q96MU7 727 aaKnown RBP23.05■■□□□ 1.28
PTPN13-204ENST00000436978 PPARGC1BQ86YN6 1023 aaKnown RBP23.01■■□□□ 1.27
PTPN13-204ENST00000436978 ABCC9O60706 1549 aa22.97■■□□□ 1.27
PTPN13-204ENST00000436978 ITGAEP38570 1179 aa22.96■■□□□ 1.27
PTPN13-204ENST00000436978 DAXXQ9UER7 740 aaPredicted RBP22.89■■□□□ 1.25
PTPN13-204ENST00000436978 POLR3GLQ9BT43 218 aa22.87■■□□□ 1.25
PTPN13-204ENST00000436978 MYT1Q01538 1121 aa22.83■■□□□ 1.25
PTPN13-204ENST00000436978 CHIC1Q5VXU3 224 aa22.69■■□□□ 1.22
PTPN13-204ENST00000436978 SLC4A1APQ9BWU0 796 aaKnown RBP22.66■■□□□ 1.22
PTPN13-204ENST00000436978 CCDC180Q9P1Z9 1646 aa22.63■■□□□ 1.21
PTPN13-204ENST00000436978 LOC105371045A0A1W2PR82 267 aa22.62■■□□□ 1.21
PTPN13-204ENST00000436978 PABPN1Q86U42 306 aaKnown RBP eCLIP22.61■■□□□ 1.21
PTPN13-204ENST00000436978 HRCP23327 699 aa22.61■■□□□ 1.21
PTPN13-204ENST00000436978 FAM50AQ14320 339 aaKnown RBP22.59■■□□□ 1.21
PTPN13-204ENST00000436978 TRIM52Q96A61 297 aa22.46■■□□□ 1.19
PTPN13-204ENST00000436978 SCRIBQ14160 1630 aa22.45■■□□□ 1.18
PTPN13-204ENST00000436978 CNGB1Q14028 1251 aaPredicted RBP22.4■■□□□ 1.18
PTPN13-204ENST00000436978 ZNF316A6NFI3 1004 aaPredicted RBP22.34■■□□□ 1.17
PTPN13-204ENST00000436978 CLSPNQ9HAW4 1339 aa22.32■■□□□ 1.16
PTPN13-204ENST00000436978 FBLN2P98095 1184 aa22.31■■□□□ 1.16
PTPN13-204ENST00000436978 DIEXFQ68CQ4 756 aaKnown RBP22.28■■□□□ 1.16
PTPN13-204ENST00000436978 NEUROD1Q13562 356 aa22.21■■□□□ 1.15
PTPN13-204ENST00000436978 ANP32CO43423 234 aa22.15■■□□□ 1.14
PTPN13-204ENST00000436978 RTL5Q5HYW3 569 aaPredicted RBP22.15■■□□□ 1.14
PTPN13-204ENST00000436978 ZBTB47Q9UFB7 747 aaPredicted RBP22.14■■□□□ 1.13
PTPN13-204ENST00000436978 ZNF326Q5BKZ1 582 aaKnown RBP22.1■■□□□ 1.13
PTPN13-204ENST00000436978 CDK11AQ9UQ88 783 aaPredicted RBP22.1■■□□□ 1.13
PTPN13-204ENST00000436978 ZCCHC6Q5VYS8 1495 aaKnown RBP22.08■■□□□ 1.13
PTPN13-204ENST00000436978 NEFMP07197 916 aa22.07■■□□□ 1.12
PTPN13-204ENST00000436978 RB1CC1Q8TDY2 1594 aa22.05■■□□□ 1.12
PTPN13-204ENST00000436978 BCANQ96GW7 911 aa22.03■■□□□ 1.12
PTPN13-204ENST00000436978 CANXP27824 592 aaKnown RBP21.95■■□□□ 1.1
PTPN13-204ENST00000436978 CSRNP3Q8WYN3 585 aa21.93■■□□□ 1.1
PTPN13-204ENST00000436978 ESF1Q9H501 851 aaKnown RBP21.93■■□□□ 1.1
PTPN13-204ENST00000436978 SLC24A1O60721 1099 aa21.89■■□□□ 1.1
PTPN13-204ENST00000436978 P3H3Q8IVL6 736 aa21.88■■□□□ 1.09
PTPN13-204ENST00000436978 ZNF777Q9ULD5 760 aaPredicted RBP21.86■■□□□ 1.09
PTPN13-204ENST00000436978 ARID3CA6NKF2 412 aa21.79■■□□□ 1.08
PTPN13-204ENST00000436978 NPM1P06748 294 aaKnown RBP eCLIP21.79■■□□□ 1.08
PTPN13-204ENST00000436978 NACADO15069 1562 aa21.74■■□□□ 1.07
PTPN13-204ENST00000436978 STAG3Q9UJ98 1225 aa21.73■■□□□ 1.07
PTPN13-204ENST00000436978 TONSLQ96HA7 1378 aa21.71■■□□□ 1.07
PTPN13-204ENST00000436978 DCAF1Q9Y4B6 1507 aa21.63■■□□□ 1.05
PTPN13-204ENST00000436978 CHGAP10645 457 aaKnown RBP21.55■■□□□ 1.04
PTPN13-204ENST00000436978 ANP32AP39687 249 aaKnown RBP21.54■■□□□ 1.04
PTPN13-204ENST00000436978 GTF3C3Q9Y5Q9 886 aa21.53■■□□□ 1.04
PTPN13-204ENST00000436978 BCL11AQ9H165 835 aa21.5■■□□□ 1.03
PTPN13-204ENST00000436978 CHMP7Q8WUX9 453 aaPredicted RBP21.49■■□□□ 1.03
PTPN13-204ENST00000436978 MTUS2Q5JR59 1369 aa21.49■■□□□ 1.03
PTPN13-204ENST00000436978 ACIN1Q9UKV3 1341 aaKnown RBP21.48■■□□□ 1.03
PTPN13-204ENST00000436978 BAZ1BQ9UIG0 1483 aaKnown RBP21.46■■□□□ 1.03
PTPN13-204ENST00000436978 EEA1Q15075 1411 aa21.43■■□□□ 1.02
PTPN13-204ENST00000436978 TSPY4P0CV99 314 aa21.43■■□□□ 1.02
PTPN13-204ENST00000436978 TSPY10P0CW01 314 aa21.43■■□□□ 1.02
PTPN13-204ENST00000436978 RSF1Q96T23 1441 aaPredicted RBP21.43■■□□□ 1.02
PTPN13-204ENST00000436978 UPF2Q9HAU5 1272 aaKnown RBP21.41■■□□□ 1.02
PTPN13-204ENST00000436978 GOLGA3Q08378 1498 aa21.38■■□□□ 1.01
PTPN13-204ENST00000436978 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.38■■□□□ 1.01
PTPN13-204ENST00000436978 CLIP1P30622 1438 aa21.37■■□□□ 1.01
PTPN13-204ENST00000436978 PLPPR3Q6T4P5 718 aa21.36■■□□□ 1.01
PTPN13-204ENST00000436978 ANP32BQ92688 251 aaKnown RBP21.34■■□□□ 1.01
PTPN13-204ENST00000436978 HSP90AA1P07900 732 aaKnown RBP21.34■■□□□ 1.01
PTPN13-204ENST00000436978 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.33■■□□□ 1.01
PTPN13-204ENST00000436978 WDR43Q15061 677 aaKnown RBP eCLIP21.31■■□□□ 1
PTPN13-204ENST00000436978 CHIC2Q9UKJ5 165 aa21.29■■□□□ 1
PTPN13-204ENST00000436978 BAZ1AQ9NRL2 1556 aaPredicted RBP21.28■■□□□ 1
PTPN13-204ENST00000436978 ERCC6Q03468 1493 aa21.28■■□□□ 1
PTPN13-204ENST00000436978 TMC1Q8TDI8 760 aa21.28■■□□□ 1
PTPN13-204ENST00000436978 HNRNPUQ00839 825 aaKnown RBP eCLIP21.24■□□□□ 0.99
PTPN13-204ENST00000436978 KIF27Q86VH2 1401 aa21.23■□□□□ 0.99
PTPN13-204ENST00000436978 FAM9BQ8IZU0 186 aa21.21■□□□□ 0.99
PTPN13-204ENST00000436978 NPM2Q86SE8 214 aaKnown RBP21.21■□□□□ 0.99
PTPN13-204ENST00000436978 WRNQ14191 1432 aaPredicted RBP eCLIP21.18■□□□□ 0.98
PTPN13-204ENST00000436978 CEP164Q9UPV0 1460 aa21.18■□□□□ 0.98
PTPN13-204ENST00000436978 DDX10Q13206 875 aaKnown RBP21.17■□□□□ 0.98
PTPN13-204ENST00000436978 PLEKHD1A6NEE1 506 aa21.16■□□□□ 0.98
PTPN13-204ENST00000436978 MYH16Q9H6N6 1097 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms