RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 UPF2Q9HAU5 1272 aaKnown RBP15.31■□□□□ 0.04
PTCH1-208ENST00000430669 CFAP43Q8NDM7 1665 aa15.31■□□□□ 0.04
PTCH1-208ENST00000430669 NUP155O75694 1391 aa15.31■□□□□ 0.04
PTCH1-208ENST00000430669 RRBP1Q9P2E9 1410 aaKnown RBP15.31■□□□□ 0.04
PTCH1-208ENST00000430669 TMF1P82094 1093 aa15.3■□□□□ 0.04
PTCH1-208ENST00000430669 SYNJ2O15056 1496 aa15.3■□□□□ 0.04
PTCH1-208ENST00000430669 HDGFP51858 240 aaKnown RBP15.3■□□□□ 0.04
PTCH1-208ENST00000430669 UACAQ9BZF9 1416 aa15.3■□□□□ 0.04
PTCH1-208ENST00000430669 NCOA2Q15596 1464 aa15.29■□□□□ 0.04
PTCH1-208ENST00000430669 KIF14Q15058 1648 aa15.28■□□□□ 0.04
PTCH1-208ENST00000430669 HIRIP3Q9BW71 556 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-208ENST00000430669 ROCK2O75116 1388 aaKnown RBP15.28■□□□□ 0.04
PTCH1-208ENST00000430669 MAGI1Q96QZ7 1491 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-208ENST00000430669 CCDC136Q96JN2 1154 aa15.27■□□□□ 0.04
PTCH1-208ENST00000430669 DCAF11Q8TEB1 546 aa15.27■□□□□ 0.04
PTCH1-208ENST00000430669 DHX57Q6P158 1386 aaKnown RBP15.27■□□□□ 0.03
PTCH1-208ENST00000430669 WDR97A6NE52 1622 aa15.26■□□□□ 0.03
PTCH1-208ENST00000430669 PTPN23Q9H3S7 1636 aa15.26■□□□□ 0.03
PTCH1-208ENST00000430669 PKD2Q13563 968 aa15.26■□□□□ 0.03
PTCH1-208ENST00000430669 PNNQ9H307 717 aaKnown RBP15.25■□□□□ 0.03
PTCH1-208ENST00000430669 SNAPC4Q5SXM2 1469 aa15.24■□□□□ 0.03
PTCH1-208ENST00000430669 ARID4BQ4LE39 1312 aaPredicted RBP15.24■□□□□ 0.03
PTCH1-208ENST00000430669 ARHGAP5Q13017 1502 aa15.22■□□□□ 0.03
PTCH1-208ENST00000430669 PLEKHH2Q8IVE3 1493 aa15.22■□□□□ 0.03
PTCH1-208ENST00000430669 MIA2Q96PC5 1412 aa15.22■□□□□ 0.03
PTCH1-208ENST00000430669 CCDC144AA2RUR9 1427 aa15.21■□□□□ 0.03
PTCH1-208ENST00000430669 SPAG9O60271 1321 aaKnown RBP15.21■□□□□ 0.03
PTCH1-208ENST00000430669 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.21■□□□□ 0.03
PTCH1-208ENST00000430669 KTN1Q86UP2 1357 aaKnown RBP15.19■□□□□ 0.02
PTCH1-208ENST00000430669 EIF5BO60841 1220 aaKnown RBP15.19■□□□□ 0.02
PTCH1-208ENST00000430669 KIAA0586Q9BVV6 1533 aa15.18■□□□□ 0.02
PTCH1-208ENST00000430669 MYH16Q9H6N6 1097 aa15.18■□□□□ 0.02
PTCH1-208ENST00000430669 POGKQ9P215 609 aa15.17■□□□□ 0.02
PTCH1-208ENST00000430669 RALBP1Q15311 655 aa15.16■□□□□ 0.02
PTCH1-208ENST00000430669 NUDCQ9Y266 331 aa15.16■□□□□ 0.02
PTCH1-208ENST00000430669 SCAF1Q9H7N4 1312 aaKnown RBP15.15■□□□□ 0.02
PTCH1-208ENST00000430669 HSPA5P11021 654 aaKnown RBP15.15■□□□□ 0.02
PTCH1-208ENST00000430669 RAPGEF6Q8TEU7 1601 aa15.15■□□□□ 0.02
PTCH1-208ENST00000430669 URB2Q14146 1524 aaKnown RBP15.15■□□□□ 0.02
PTCH1-208ENST00000430669 HNRNPMP52272 730 aaKnown RBP eCLIP15.15■□□□□ 0.02
PTCH1-208ENST00000430669 SALL2Q9Y467 1007 aaPredicted RBP15.14■□□□□ 0.01
PTCH1-208ENST00000430669 PHLDB1Q86UU1 1377 aa15.14■□□□□ 0.01
PTCH1-208ENST00000430669 EPRSP07814 1512 aaKnown RBP15.14■□□□□ 0.01
PTCH1-208ENST00000430669 PLPPR3Q6T4P5 718 aa15.14■□□□□ 0.01
PTCH1-208ENST00000430669 CHMP4BQ9H444 224 aaKnown RBP15.12■□□□□ 0.01
PTCH1-208ENST00000430669 MS4A1P11836 297 aa15.1■□□□□ 0.01
PTCH1-208ENST00000430669 GRIN2AQ12879 1464 aa15.1■□□□□ 0.01
PTCH1-208ENST00000430669 TROQ12816 1431 aaPredicted RBP15.09■□□□□ 0.01
PTCH1-208ENST00000430669 MAPK8IP3Q9UPT6 1336 aa15.09■□□□□ 0.01
PTCH1-208ENST00000430669 OSCARQ8IYS5 282 aa15.09■□□□□ 0.01
PTCH1-208ENST00000430669 PRG4Q92954 1404 aaPredicted RBP15.09■□□□□ 0.01
PTCH1-208ENST00000430669 ERICH6BQ5W0A0 696 aa15.08■□□□□ 0.01
PTCH1-208ENST00000430669 STAC3Q96MF2 364 aa15.08■□□□□ 0.01
PTCH1-208ENST00000430669 HFM1A2PYH4 1435 aa15.08■□□□□ 0
PTCH1-208ENST00000430669 KIF15Q9NS87 1388 aa15.08■□□□□ 0
PTCH1-208ENST00000430669 FOXD1Q16676 465 aa15.08■□□□□ 0
PTCH1-208ENST00000430669 ADAMTS12P58397 1594 aa15.07■□□□□ 0
PTCH1-208ENST00000430669 HSP90AA1P07900 732 aaKnown RBP15.07■□□□□ 0
PTCH1-208ENST00000430669 ADGBQ8N7X0 1667 aa15.07■□□□□ 0
PTCH1-208ENST00000430669 DDRGK1Q96HY6 314 aa15.06■□□□□ 0
PTCH1-208ENST00000430669 L3MBTL2Q969R5 705 aa15.06■□□□□ 0
PTCH1-208ENST00000430669 C14orf37Q86TY3 774 aa15.05■□□□□ -0
PTCH1-208ENST00000430669 ANKRD50Q9ULJ7 1429 aa15.04■□□□□ -0
PTCH1-208ENST00000430669 KIF3BO15066 747 aa15.04■□□□□ -0
PTCH1-208ENST00000430669 NPM2Q86SE8 214 aaKnown RBP15.04■□□□□ -0
PTCH1-208ENST00000430669 GGT6Q6P531 493 aa15.03■□□□□ -0
PTCH1-208ENST00000430669 PPP4R2Q9NY27 417 aa15.03■□□□□ -0
PTCH1-208ENST00000430669 C9orf84Q5VXU9 1444 aa15.03■□□□□ -0
PTCH1-208ENST00000430669 CC2D1BQ5T0F9 858 aaKnown RBP15.03■□□□□ -0
PTCH1-208ENST00000430669 ABCA5Q8WWZ7 1642 aa15.03■□□□□ -0
PTCH1-208ENST00000430669 FTSJ3Q8IY81 847 aaKnown RBP15.03■□□□□ -0
PTCH1-208ENST00000430669 WASHC2CQ9Y4E1 1318 aa15.02■□□□□ -0
PTCH1-208ENST00000430669 SUPT16HQ9Y5B9 1047 aaKnown RBP15.02□□□□□ -0.01
PTCH1-208ENST00000430669 ROCK1Q13464 1354 aa15.02□□□□□ -0.01
PTCH1-208ENST00000430669 CDK13Q14004 1512 aaKnown RBP15.01□□□□□ -0.01
PTCH1-208ENST00000430669 USP47Q96K76 1375 aa15.01□□□□□ -0.01
PTCH1-208ENST00000430669 EIF4G3O43432 1585 aaKnown RBP15□□□□□ -0.01
PTCH1-208ENST00000430669 DAPK1P53355 1430 aa15□□□□□ -0.01
PTCH1-208ENST00000430669 HDGFL2Q7Z4V5 671 aaPredicted RBP15□□□□□ -0.01
PTCH1-208ENST00000430669 SRPK2P78362 688 aaKnown RBP15□□□□□ -0.01
PTCH1-208ENST00000430669 BECN1Q14457 450 aa15□□□□□ -0.01
PTCH1-208ENST00000430669 HAP1P54257 671 aaPredicted RBP14.99□□□□□ -0.01
PTCH1-208ENST00000430669 ANP32BQ92688 251 aaKnown RBP14.99□□□□□ -0.01
PTCH1-208ENST00000430669 MORC1Q86VD1 984 aa14.98□□□□□ -0.01
PTCH1-208ENST00000430669 CAMSAP2Q08AD1 1489 aa14.98□□□□□ -0.01
PTCH1-208ENST00000430669 WDR62O43379 1518 aa14.98□□□□□ -0.01
PTCH1-208ENST00000430669 KIAA0556O60303 1618 aa14.97□□□□□ -0.01
PTCH1-208ENST00000430669 CALD1Q05682 793 aaKnown RBP14.97□□□□□ -0.01
PTCH1-208ENST00000430669 CASC1Q6TDU7 716 aa14.95□□□□□ -0.02
PTCH1-208ENST00000430669 UGGT2Q9NYU1 1516 aa14.95□□□□□ -0.02
PTCH1-208ENST00000430669 BCL11AQ9H165 835 aa14.95□□□□□ -0.02
PTCH1-208ENST00000430669 TERF2IPQ9NYB0 399 aa14.94□□□□□ -0.02
PTCH1-208ENST00000430669 CCDC141Q6ZP82 1450 aa14.94□□□□□ -0.02
PTCH1-208ENST00000430669 KIAA1107Q9UPP5 1409 aa14.93□□□□□ -0.02
PTCH1-208ENST00000430669 PPM1GO15355 546 aaPredicted RBP14.93□□□□□ -0.02
PTCH1-208ENST00000430669 NLRP13Q86W25 1043 aa14.93□□□□□ -0.02
PTCH1-208ENST00000430669 CFAP65Q6ZU64 1925 aaKnown RBP14.93□□□□□ -0.02
PTCH1-208ENST00000430669 IRX6P78412 446 aaPredicted RBP14.92□□□□□ -0.02
PTCH1-208ENST00000430669 MYO5CQ9NQX4 1742 aa14.92□□□□□ -0.02
PTCH1-208ENST00000430669 SCAPERQ9BY12 1400 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms