RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KDM6BO15054 1643 aa11.69□□□□□ -0.54
USP40-203ENST00000427112 ST20-MTHFSA0A0A6YYL1 179 aa11.69□□□□□ -0.54
USP40-203ENST00000427112 SLC4A3P48751 1232 aa11.69□□□□□ -0.54
USP40-203ENST00000427112 TOPBP1Q92547 1522 aa11.69□□□□□ -0.54
USP40-203ENST00000427112 HFM1A2PYH4 1435 aa11.69□□□□□ -0.54
USP40-203ENST00000427112 EXOC6Q8TAG9 804 aa11.69□□□□□ -0.54
USP40-203ENST00000427112 CDCA7LQ96GN5 454 aa11.69□□□□□ -0.54
USP40-203ENST00000427112 HNRNPMP52272 730 aaKnown RBP eCLIP11.67□□□□□ -0.544e-6■■□□□ 11.9
USP40-203ENST00000427112 NOP58Q9Y2X3 529 aaKnown RBP11.67□□□□□ -0.54
USP40-203ENST00000427112 FYCO1Q9BQS8 1478 aa11.66□□□□□ -0.54
USP40-203ENST00000427112 THOC2Q8NI27 1593 aaKnown RBP11.66□□□□□ -0.54
USP40-203ENST00000427112 PTPN23Q9H3S7 1636 aa11.66□□□□□ -0.54
USP40-203ENST00000427112 ERCC6Q03468 1493 aa11.65□□□□□ -0.54
USP40-203ENST00000427112 CNTLNQ9NXG0 1405 aa11.65□□□□□ -0.54
USP40-203ENST00000427112 GAPVD1Q14C86 1478 aa11.65□□□□□ -0.54
USP40-203ENST00000427112 LAMC3Q9Y6N6 1575 aa11.65□□□□□ -0.55
USP40-203ENST00000427112 ANP32AP39687 249 aaKnown RBP11.64□□□□□ -0.55
USP40-203ENST00000427112 MYT1LQ9UL68 1186 aa11.64□□□□□ -0.55
USP40-203ENST00000427112 MAGI3Q5TCQ9 1506 aa11.64□□□□□ -0.55
USP40-203ENST00000427112 CHMP7Q8WUX9 453 aaPredicted RBP11.63□□□□□ -0.55
USP40-203ENST00000427112 ZBTB47Q9UFB7 747 aaPredicted RBP11.63□□□□□ -0.55
USP40-203ENST00000427112 RTL5Q5HYW3 569 aaPredicted RBP11.63□□□□□ -0.55
USP40-203ENST00000427112 NBPF1Q3BBV0 1214 aa11.62□□□□□ -0.55
USP40-203ENST00000427112 ZBED9Q6R2W3 1325 aa11.62□□□□□ -0.55
USP40-203ENST00000427112 ARXQ96QS3 562 aa11.61□□□□□ -0.55
USP40-203ENST00000427112 USP47Q96K76 1375 aa11.61□□□□□ -0.55
USP40-203ENST00000427112 URB2Q14146 1524 aaKnown RBP11.61□□□□□ -0.55
USP40-203ENST00000427112 NUDCQ9Y266 331 aa11.61□□□□□ -0.55
USP40-203ENST00000427112 SNAPC4Q5SXM2 1469 aa11.6□□□□□ -0.55
USP40-203ENST00000427112 FANCIQ9NVI1 1328 aa11.6□□□□□ -0.55
USP40-203ENST00000427112 DENND4BO75064 1496 aaPredicted RBP11.6□□□□□ -0.55
USP40-203ENST00000427112 PRG4Q92954 1404 aaPredicted RBP11.6□□□□□ -0.55
USP40-203ENST00000427112 NUP155O75694 1391 aa11.6□□□□□ -0.55
USP40-203ENST00000427112 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.59□□□□□ -0.55
USP40-203ENST00000427112 TNNT2P45379 298 aaPredicted RBP11.57□□□□□ -0.56
USP40-203ENST00000427112 RGS3P49796 1198 aa11.57□□□□□ -0.56
USP40-203ENST00000427112 PRDM2Q13029 1718 aa11.57□□□□□ -0.56
USP40-203ENST00000427112 ABCA10Q8WWZ4 1543 aa11.57□□□□□ -0.56
USP40-203ENST00000427112 IL27Q8NEV9 243 aa11.57□□□□□ -0.56
USP40-203ENST00000427112 CFAP43Q8NDM7 1665 aa11.57□□□□□ -0.56
USP40-203ENST00000427112 CCDC146Q8IYE0 955 aa11.56□□□□□ -0.56
USP40-203ENST00000427112 ANKRD30BQ9BXX2 1392 aa11.56□□□□□ -0.56
USP40-203ENST00000427112 NEUROD2Q15784 382 aa11.56□□□□□ -0.56
USP40-203ENST00000427112 KIF21AQ7Z4S6 1674 aa11.55□□□□□ -0.56
USP40-203ENST00000427112 TSPY4P0CV99 314 aa11.55□□□□□ -0.56
USP40-203ENST00000427112 TSPY10P0CW01 314 aa11.55□□□□□ -0.56
USP40-203ENST00000427112 C20orf194Q5TEA3 1177 aa11.55□□□□□ -0.56
USP40-203ENST00000427112 PNISRQ8TF01 805 aaKnown RBP11.55□□□□□ -0.56
USP40-203ENST00000427112 MAP3K1Q13233 1512 aa11.55□□□□□ -0.56
USP40-203ENST00000427112 NEFMP07197 916 aa11.55□□□□□ -0.56
USP40-203ENST00000427112 KDM5BQ9UGL1 1544 aa11.54□□□□□ -0.56
USP40-203ENST00000427112 RCAN3Q9UKA8 241 aa11.54□□□□□ -0.56
USP40-203ENST00000427112 NCOA1Q15788 1441 aa11.54□□□□□ -0.56
USP40-203ENST00000427112 EPRSP07814 1512 aaKnown RBP11.53□□□□□ -0.56
USP40-203ENST00000427112 GRIN2BQ13224 1484 aa11.53□□□□□ -0.56
USP40-203ENST00000427112 DNMBPQ6XZF7 1577 aa11.52□□□□□ -0.56
USP40-203ENST00000427112 CRBNQ96SW2 442 aa11.52□□□□□ -0.57
USP40-203ENST00000427112 ZNF608Q9ULD9 1512 aaPredicted RBP11.52□□□□□ -0.57
USP40-203ENST00000427112 ABCC5O15440 1437 aa11.52□□□□□ -0.57
USP40-203ENST00000427112 PLEKHD1A6NEE1 506 aa11.52□□□□□ -0.57
USP40-203ENST00000427112 LRRIQ1Q96JM4 1722 aa11.52□□□□□ -0.57
USP40-203ENST00000427112 IPO9Q96P70 1041 aaKnown RBP11.51□□□□□ -0.57
USP40-203ENST00000427112 PANK3Q9H999 370 aa11.5□□□□□ -0.57
USP40-203ENST00000427112 ANO8Q9HCE9 1232 aaPredicted RBP11.5□□□□□ -0.57
USP40-203ENST00000427112 SUPT6HQ7KZ85 1726 aaKnown RBP11.5□□□□□ -0.57
USP40-203ENST00000427112 DAPK1P53355 1430 aa11.5□□□□□ -0.57
USP40-203ENST00000427112 ROCK2O75116 1388 aaKnown RBP11.5□□□□□ -0.57
USP40-203ENST00000427112 RRP1P56182 461 aaKnown RBP11.5□□□□□ -0.57
USP40-203ENST00000427112 PDE4AP27815 886 aa11.49□□□□□ -0.57
USP40-203ENST00000427112 EFCAB5A4FU69 1503 aa11.49□□□□□ -0.57
USP40-203ENST00000427112 PLB1Q6P1J6 1458 aa11.49□□□□□ -0.57
USP40-203ENST00000427112 CHGAP10645 457 aaKnown RBP11.48□□□□□ -0.57
USP40-203ENST00000427112 WDR62O43379 1518 aa11.48□□□□□ -0.57
USP40-203ENST00000427112 DHX29Q7Z478 1369 aaKnown RBP11.47□□□□□ -0.57
USP40-203ENST00000427112 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.47□□□□□ -0.57
USP40-203ENST00000427112 DAXXQ9UER7 740 aaPredicted RBP11.47□□□□□ -0.57
USP40-203ENST00000427112 UGGT2Q9NYU1 1516 aa11.47□□□□□ -0.57
USP40-203ENST00000427112 JPH4Q96JJ6 628 aa11.47□□□□□ -0.57
USP40-203ENST00000427112 SPRYD3Q8NCJ5 442 aa11.46□□□□□ -0.57
USP40-203ENST00000427112 EHBP1L1Q8N3D4 1523 aa11.46□□□□□ -0.57
USP40-203ENST00000427112 NUTM2DQ5VT03 806 aaPredicted RBP11.45□□□□□ -0.58
USP40-203ENST00000427112 ADAMTS8Q9UP79 889 aa11.45□□□□□ -0.58
USP40-203ENST00000427112 RRP7AQ9Y3A4 280 aaKnown RBP11.45□□□□□ -0.58
USP40-203ENST00000427112 CTTNBP2Q8WZ74 1663 aa11.45□□□□□ -0.58
USP40-203ENST00000427112 RPRD2Q5VT52 1461 aaKnown RBP11.44□□□□□ -0.58
USP40-203ENST00000427112 BCL2L13Q9BXK5 485 aa11.44□□□□□ -0.58
USP40-203ENST00000427112 MRC2Q9UBG0 1479 aa11.44□□□□□ -0.58
USP40-203ENST00000427112 MYBBP1AQ9BQG0 1328 aaKnown RBP11.42□□□□□ -0.58
USP40-203ENST00000427112 FRAT1Q92837 279 aaPredicted RBP11.42□□□□□ -0.58
USP40-203ENST00000427112 ANKRD50Q9ULJ7 1429 aa11.42□□□□□ -0.58
USP40-203ENST00000427112 WDR43Q15061 677 aaKnown RBP eCLIP11.42□□□□□ -0.58
USP40-203ENST00000427112 BRPF3Q9ULD4 1205 aa11.42□□□□□ -0.58
USP40-203ENST00000427112 TEX14Q8IWB6 1497 aa11.41□□□□□ -0.58
USP40-203ENST00000427112 SAFB2Q14151 953 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP40-203ENST00000427112 SMG6Q86US8 1419 aaKnown RBP11.41□□□□□ -0.58
USP40-203ENST00000427112 ANKRD30AQ9BXX3 1397 aa11.4□□□□□ -0.58
USP40-203ENST00000427112 CANXP27824 592 aaKnown RBP11.4□□□□□ -0.58
USP40-203ENST00000427112 NLRP13Q86W25 1043 aa11.39□□□□□ -0.59
USP40-203ENST00000427112 SPATA31E1Q6ZUB1 1445 aa11.39□□□□□ -0.59
USP40-203ENST00000427112 CLUAP1Q96AJ1 413 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms