RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NISCHQ9Y2I1 1504 aa16.56■□□□□ 0.24
USP40-203ENST00000427112 SHROOM4Q9ULL8 1493 aa15.44■□□□□ 0.06
USP40-203ENST00000427112 SUPT5HO00267 1087 aaKnown RBP15.25■□□□□ 0.03
USP40-203ENST00000427112 DCAF8L2P0C7V8 631 aa15.1■□□□□ 0.01
USP40-203ENST00000427112 EHMT2Q96KQ7 1210 aa14.61□□□□□ -0.07
USP40-203ENST00000427112 PCGF6Q9BYE7 350 aa14.6□□□□□ -0.07
USP40-203ENST00000427112 PPARGC1BQ86YN6 1023 aaKnown RBP14.54□□□□□ -0.08
USP40-203ENST00000427112 LOC105371045A0A1W2PR82 267 aa14.43□□□□□ -0.1
USP40-203ENST00000427112 CHIC1Q5VXU3 224 aa14.4□□□□□ -0.1
USP40-203ENST00000427112 MYO15BQ96JP2 1530 aa14.35□□□□□ -0.11
USP40-203ENST00000427112 FAM9AQ8IZU1 332 aaPredicted RBP14.29□□□□□ -0.12
USP40-203ENST00000427112 HRCP23327 699 aa14.27□□□□□ -0.13
USP40-203ENST00000427112 TTBK1Q5TCY1 1321 aaPredicted RBP14.08□□□□□ -0.16
USP40-203ENST00000427112 ZCCHC6Q5VYS8 1495 aaKnown RBP13.93□□□□□ -0.18
USP40-203ENST00000427112 TRIM41Q8WV44 630 aa13.85□□□□□ -0.19
USP40-203ENST00000427112 TRIM26Q12899 539 aaPredicted RBP13.78□□□□□ -0.2
USP40-203ENST00000427112 CCDC180Q9P1Z9 1646 aa13.69□□□□□ -0.22
USP40-203ENST00000427112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.68□□□□□ -0.22
USP40-203ENST00000427112 RANGAP1P46060 587 aaPredicted RBP13.61□□□□□ -0.23
USP40-203ENST00000427112 CCER1Q8TC90 406 aaPredicted RBP13.54□□□□□ -0.24
USP40-203ENST00000427112 ABCC9O60706 1549 aa13.51□□□□□ -0.25
USP40-203ENST00000427112 SCRIBQ14160 1630 aa13.51□□□□□ -0.25
USP40-203ENST00000427112 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
USP40-203ENST00000427112 DCAF1Q9Y4B6 1507 aa13.5□□□□□ -0.25
USP40-203ENST00000427112 YTHDC1Q96MU7 727 aaKnown RBP13.48□□□□□ -0.25
USP40-203ENST00000427112 RSF1Q96T23 1441 aaPredicted RBP13.4□□□□□ -0.26
USP40-203ENST00000427112 RB1CC1Q8TDY2 1594 aa13.34□□□□□ -0.27
USP40-203ENST00000427112 UBTFP17480 764 aaKnown RBP13.34□□□□□ -0.27
USP40-203ENST00000427112 ZEB1P37275 1124 aaPredicted RBP13.33□□□□□ -0.28
USP40-203ENST00000427112 NEUROD1Q13562 356 aa13.32□□□□□ -0.28
USP40-203ENST00000427112 CECR2Q9BXF3 1484 aa13.32□□□□□ -0.28
USP40-203ENST00000427112 HNRNPUL2Q1KMD3 747 aaKnown RBP13.31□□□□□ -0.28
USP40-203ENST00000427112 PELP1Q8IZL8 1130 aaKnown RBP13.29□□□□□ -0.28
USP40-203ENST00000427112 GTF3C3Q9Y5Q9 886 aa13.26□□□□□ -0.29
USP40-203ENST00000427112 PABPN1Q86U42 306 aaKnown RBP eCLIP13.25□□□□□ -0.29
USP40-203ENST00000427112 DIEXFQ68CQ4 756 aaKnown RBP13.25□□□□□ -0.29
USP40-203ENST00000427112 ACIN1Q9UKV3 1341 aaKnown RBP13.14□□□□□ -0.31
USP40-203ENST00000427112 MROH2BQ7Z745 1585 aa13.13□□□□□ -0.31
USP40-203ENST00000427112 ITGAEP38570 1179 aa13.08□□□□□ -0.32
USP40-203ENST00000427112 ABCC8Q09428 1581 aa13.07□□□□□ -0.32
USP40-203ENST00000427112 WIZO95785 1651 aa13.06□□□□□ -0.32
USP40-203ENST00000427112 SOGA1O94964 1423 aa13.04□□□□□ -0.32
USP40-203ENST00000427112 CENPBP07199 599 aaPredicted RBP13.03□□□□□ -0.32
USP40-203ENST00000427112 MIER1Q8N108 512 aa13.01□□□□□ -0.33
USP40-203ENST00000427112 CCDC88BA6NC98 1476 aa13.01□□□□□ -0.33
USP40-203ENST00000427112 RUSC2Q8N2Y8 1516 aa13□□□□□ -0.33
USP40-203ENST00000427112 APLP2Q06481 763 aa12.97□□□□□ -0.33
USP40-203ENST00000427112 CSRNP3Q8WYN3 585 aa12.97□□□□□ -0.33
USP40-203ENST00000427112 MYT1Q01538 1121 aa12.95□□□□□ -0.34
USP40-203ENST00000427112 ZNF316A6NFI3 1004 aaPredicted RBP12.93□□□□□ -0.34
USP40-203ENST00000427112 CEP162Q5TB80 1403 aa12.93□□□□□ -0.34
USP40-203ENST00000427112 NACADO15069 1562 aa12.9□□□□□ -0.34
USP40-203ENST00000427112 ATP1B4Q9UN42 357 aaPredicted RBP12.89□□□□□ -0.35
USP40-203ENST00000427112 BCANQ96GW7 911 aa12.84□□□□□ -0.35
USP40-203ENST00000427112 HIRIP3Q9BW71 556 aaPredicted RBP12.81□□□□□ -0.36
USP40-203ENST00000427112 DNAJC5BQ9UF47 199 aa12.78□□□□□ -0.36
USP40-203ENST00000427112 P3H3Q8IVL6 736 aa12.75□□□□□ -0.37
USP40-203ENST00000427112 KCNH8Q96L42 1107 aa12.75□□□□□ -0.37
USP40-203ENST00000427112 UNC13AQ9UPW8 1703 aa12.75□□□□□ -0.37
USP40-203ENST00000427112 KANK4Q5T7N3 995 aaPredicted RBP12.71□□□□□ -0.37
USP40-203ENST00000427112 TNIKQ9UKE5 1360 aa12.69□□□□□ -0.38
USP40-203ENST00000427112 CNGB1Q14028 1251 aaPredicted RBP12.68□□□□□ -0.38
USP40-203ENST00000427112 CLIP1P30622 1438 aa12.68□□□□□ -0.38
USP40-203ENST00000427112 BICRAQ9NZM4 1560 aa12.65□□□□□ -0.38
USP40-203ENST00000427112 WRNQ14191 1432 aaPredicted RBP eCLIP12.64□□□□□ -0.39
USP40-203ENST00000427112 BAZ1AQ9NRL2 1556 aaPredicted RBP12.63□□□□□ -0.39
USP40-203ENST00000427112 FAM50AQ14320 339 aaKnown RBP12.62□□□□□ -0.39
USP40-203ENST00000427112 GOLGA3Q08378 1498 aa12.6□□□□□ -0.39
USP40-203ENST00000427112 RAPGEF2Q9Y4G8 1499 aa12.6□□□□□ -0.39
USP40-203ENST00000427112 DDX10Q13206 875 aaKnown RBP12.59□□□□□ -0.39
USP40-203ENST00000427112 SMARCA2P51531 1590 aa12.59□□□□□ -0.39
USP40-203ENST00000427112 SIN3AQ96ST3 1273 aa12.59□□□□□ -0.39
USP40-203ENST00000427112 SENP3-EIF4A1A0A087X0R7 540 aa12.57□□□□□ -0.4
USP40-203ENST00000427112 TRIM52Q96A61 297 aa12.56□□□□□ -0.4
USP40-203ENST00000427112 ARID3CA6NKF2 412 aa12.56□□□□□ -0.4
USP40-203ENST00000427112 TOP2AP11388 1531 aaKnown RBP12.55□□□□□ -0.4
USP40-203ENST00000427112 SMARCA4P51532 1647 aa12.53□□□□□ -0.4
USP40-203ENST00000427112 SUPT16HQ9Y5B9 1047 aaKnown RBP12.53□□□□□ -0.4
USP40-203ENST00000427112 IRX6P78412 446 aaPredicted RBP12.51□□□□□ -0.41
USP40-203ENST00000427112 FKBP8Q14318 412 aa12.49□□□□□ -0.41
USP40-203ENST00000427112 SYNJ1O43426 1573 aa12.48□□□□□ -0.41
USP40-203ENST00000427112 EIF4G1Q04637 1599 aaKnown RBP12.47□□□□□ -0.41
USP40-203ENST00000427112 VPS8Q8N3P4 1428 aa12.46□□□□□ -0.42
USP40-203ENST00000427112 CEP164Q9UPV0 1460 aa12.45□□□□□ -0.42
USP40-203ENST00000427112 DHX57Q6P158 1386 aaKnown RBP12.44□□□□□ -0.42
USP40-203ENST00000427112 BAZ1BQ9UIG0 1483 aaKnown RBP12.39□□□□□ -0.43
USP40-203ENST00000427112 EEA1Q15075 1411 aa12.38□□□□□ -0.43
USP40-203ENST00000427112 POLR3GLQ9BT43 218 aa12.38□□□□□ -0.43
USP40-203ENST00000427112 TSHZ2Q9NRE2 1034 aa12.38□□□□□ -0.43
USP40-203ENST00000427112 CHIC2Q9UKJ5 165 aa12.36□□□□□ -0.43
USP40-203ENST00000427112 KIF21BO75037 1637 aa12.36□□□□□ -0.43
USP40-203ENST00000427112 ARAP1Q96P48 1450 aa12.32□□□□□ -0.44
USP40-203ENST00000427112 CC2D2AQ9P2K1 1620 aa12.32□□□□□ -0.44
USP40-203ENST00000427112 RAB3GAP2Q9H2M9 1393 aa12.32□□□□□ -0.44
USP40-203ENST00000427112 ATAD2BQ9ULI0 1458 aa12.31□□□□□ -0.44
USP40-203ENST00000427112 ERICH6Q7L0X2 663 aa12.3□□□□□ -0.44
USP40-203ENST00000427112 NEFLP07196 543 aa12.3□□□□□ -0.44
USP40-203ENST00000427112 CCNB3Q8WWL7 1395 aa12.3□□□□□ -0.44
USP40-203ENST00000427112 FOXD1Q16676 465 aa12.28□□□□□ -0.44
USP40-203ENST00000427112 RRP7BPQ9NSQ0 103 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms