RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 MAP3K13O43283 966 aa4.01□□□□□ -1.77
CCDC88A-205ENST00000426576 SYTL4Q96C24 671 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-205ENST00000426576 AATKQ6ZMQ8 1374 aa4.01□□□□□ -1.77
CCDC88A-205ENST00000426576 GTF2E1P29083 439 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-205ENST00000426576 PAK3O75914 559 aaPredicted RBP4□□□□□ -1.77
CCDC88A-205ENST00000426576 CCDC125Q86Z20 511 aa4□□□□□ -1.77
CCDC88A-205ENST00000426576 DLL1O00548 723 aa4□□□□□ -1.77
CCDC88A-205ENST00000426576 USP35Q9P2H5 1018 aa4□□□□□ -1.77
CCDC88A-205ENST00000426576 SRPK2P78362 688 aaKnown RBP4□□□□□ -1.77
CCDC88A-205ENST00000426576 DPY19L2Q6NUT2 758 aa4□□□□□ -1.77
CCDC88A-205ENST00000426576 THEMISQ8N1K5 641 aaPredicted RBP4□□□□□ -1.77
CCDC88A-205ENST00000426576 TTLL12Q14166 644 aaPredicted RBP4□□□□□ -1.77
CCDC88A-205ENST00000426576 CCDC24Q8N4L8 307 aa4□□□□□ -1.77
CCDC88A-205ENST00000426576 R3HDM1Q15032 1099 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-205ENST00000426576 UBTFP17480 764 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-205ENST00000426576 USP19O94966 1318 aa3.99□□□□□ -1.77
CCDC88A-205ENST00000426576 FAM122AQ96E09 287 aa3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 SUPT5HO00267 1087 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 LMOD1P29536 600 aaPredicted RBP3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 APLP1P51693 650 aa3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 RBM6P78332 1123 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 ANKRD13DQ6ZTN6 518 aa3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 MPNDQ8N594 471 aa3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 CABP1Q9NZU7 370 aa3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 EP400NLQ6ZTU2 488 aa3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 PRKAG2Q9UGJ0 569 aa3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 ATAD2Q6PL18 1390 aa3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 TRPC5Q9UL62 973 aaPredicted RBP3.98□□□□□ -1.77
CCDC88A-205ENST00000426576 APBA3O96018 575 aa3.97□□□□□ -1.77
CCDC88A-205ENST00000426576 CHADLQ6NUI6 762 aa3.97□□□□□ -1.77
CCDC88A-205ENST00000426576 SLC4A8Q2Y0W8 1093 aa3.97□□□□□ -1.77
CCDC88A-205ENST00000426576 JPH4Q96JJ6 628 aa3.97□□□□□ -1.77
CCDC88A-205ENST00000426576 NR2E3Q9Y5X4 410 aa3.97□□□□□ -1.77
CCDC88A-205ENST00000426576 TMEM265A0A087WTH1 108 aa3.96□□□□□ -1.77
CCDC88A-205ENST00000426576 USP21Q9UK80 565 aa3.96□□□□□ -1.78
CCDC88A-205ENST00000426576 MINK1Q8N4C8 1332 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-205ENST00000426576 DMWDQ09019 674 aa3.96□□□□□ -1.78
CCDC88A-205ENST00000426576 CRBNQ96SW2 442 aa3.96□□□□□ -1.78
CCDC88A-205ENST00000426576 DSG3P32926 999 aa3.96□□□□□ -1.78
CCDC88A-205ENST00000426576 SEC24BO95487 1268 aa3.95□□□□□ -1.78
CCDC88A-205ENST00000426576 EIF4G2P78344 907 aaKnown RBP eCLIP3.95□□□□□ -1.78
CCDC88A-205ENST00000426576 KCNG4Q8TDN1 519 aa3.95□□□□□ -1.78
CCDC88A-205ENST00000426576 SMARCA2P51531 1590 aa3.95□□□□□ -1.78
CCDC88A-205ENST00000426576 SPRYD3Q8NCJ5 442 aa3.95□□□□□ -1.78
CCDC88A-205ENST00000426576 DPF3Q92784 378 aa3.95□□□□□ -1.78
CCDC88A-205ENST00000426576 KDM2BQ8NHM5 1336 aa3.95□□□□□ -1.78
CCDC88A-205ENST00000426576 C1QBPQ07021 282 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-205ENST00000426576 TSPY4P0CV99 314 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 TSPY10P0CW01 314 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 NEFMP07197 916 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 ARHGAP27Q6ZUM4 889 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 TMEM87AQ8NBN3 555 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 ZNF408Q9H9D4 720 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 SPDYE4A6NLX3 237 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 PPEF1O14829 653 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 PRKG1Q13976 671 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 NCBP3Q53F19 620 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 EAPPQ56P03 285 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 P3H3Q8IVL6 736 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 STRN4Q9NRL3 753 aa3.94□□□□□ -1.78
CCDC88A-205ENST00000426576 MYCNP04198 464 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 PRKCSHP14314 528 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 ZBTB33Q86T24 672 aa3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 SPINK5Q9NQ38 1064 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 APBB1O00213 710 aa3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 ECE1P42892 770 aa3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 FAM161AQ3B820 660 aa3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 CDCA7Q9BWT1 371 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 CTCFP49711 727 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 ZNF330Q9Y3S2 320 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-205ENST00000426576 ECM2O94769 699 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-205ENST00000426576 STK24Q9Y6E0 443 aa3.92□□□□□ -1.78
CCDC88A-205ENST00000426576 PKD2Q13563 968 aa3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 LRRC59Q96AG4 307 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 HIRIP3Q9BW71 556 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 KIF22Q14807 665 aa3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 MIER1Q8N108 512 aa3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 CABP2Q9NPB3 220 aa3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 BCS1LQ9Y276 419 aa3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 APC2O95996 2303 aa3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 MSH6P52701 1360 aa3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 TPRNQ4KMQ1 711 aa3.91□□□□□ -1.78
CCDC88A-205ENST00000426576 CADPS2Q86UW7 1296 aa3.9□□□□□ -1.78
CCDC88A-205ENST00000426576 TFCP2L1Q9NZI6 479 aa3.9□□□□□ -1.78
CCDC88A-205ENST00000426576 HSPA6P17066 643 aa3.9□□□□□ -1.79
CCDC88A-205ENST00000426576 RSF1Q96T23 1441 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-205ENST00000426576 NF2P35240 595 aa3.9□□□□□ -1.79
CCDC88A-205ENST00000426576 PRELPP51888 382 aa3.9□□□□□ -1.79
CCDC88A-205ENST00000426576 BICDL1Q6ZP65 573 aa3.9□□□□□ -1.79
CCDC88A-205ENST00000426576 CARMIL2Q6F5E8 1435 aa3.9□□□□□ -1.79
CCDC88A-205ENST00000426576 STK25O00506 426 aa3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 LBHD1Q9BQE6 289 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 UHRF1BP1Q6BDS2 1440 aa3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 RAPGEF3O95398 923 aa3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 CEBPAP49715 358 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 TXNDC2Q86VQ3 553 aa3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 EFCAB2Q5VUJ9 269 aa3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 SCRIBQ14160 1630 aa3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 SSFA2P28290 1259 aa3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 PSME1Q06323 249 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms