RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 AKNAQ7Z591 1439 aa38.19■■■■□ 3.7
VEGFA-209ENST00000425836 ARHGAP5Q13017 1502 aa38.18■■■■□ 3.7
VEGFA-209ENST00000425836 KDM6BO15054 1643 aa38.15■■■■□ 3.7
VEGFA-209ENST00000425836 PREX2Q70Z35 1606 aa38.14■■■■□ 3.7
VEGFA-209ENST00000425836 CFDP1Q9UEE9 299 aaPredicted RBP38.13■■■■□ 3.69
VEGFA-209ENST00000425836 CDC42BPAQ5VT25 1732 aa38.12■■■■□ 3.69
VEGFA-209ENST00000425836 CDC42BPBQ9Y5S2 1711 aa38.11■■■■□ 3.69
VEGFA-209ENST00000425836 CFAP74Q9C0B2 1584 aa38.11■■■■□ 3.69
VEGFA-209ENST00000425836 ZNF777Q9ULD5 760 aaPredicted RBP38.07■■■■□ 3.69
VEGFA-209ENST00000425836 ADGRL1O94910 1474 aa38.05■■■■□ 3.68
VEGFA-209ENST00000425836 SCAPERQ9BY12 1400 aa38.04■■■■□ 3.68
VEGFA-209ENST00000425836 RAPGEF3O95398 923 aa38.04■■■■□ 3.68
VEGFA-209ENST00000425836 PPARGC1BQ86YN6 1023 aaKnown RBP38.04■■■■□ 3.68
VEGFA-209ENST00000425836 DENND4BO75064 1496 aaPredicted RBP38.01■■■■□ 3.68
VEGFA-209ENST00000425836 ITSN2Q9NZM3 1697 aa37.98■■■■□ 3.67
VEGFA-209ENST00000425836 MYOM3Q5VTT5 1437 aa37.98■■■■□ 3.67
VEGFA-209ENST00000425836 ZNF644Q9H582 1327 aaPredicted RBP37.98■■■■□ 3.67
VEGFA-209ENST00000425836 SAMD9LQ8IVG5 1584 aa37.94■■■■□ 3.66
VEGFA-209ENST00000425836 ARHGEF12Q9NZN5 1544 aa37.93■■■■□ 3.66
VEGFA-209ENST00000425836 ABCC1P33527 1531 aa37.92■■■■□ 3.66
VEGFA-209ENST00000425836 POGZQ7Z3K3 1410 aa37.91■■■■□ 3.66
VEGFA-209ENST00000425836 MIA2Q96PC5 1412 aa37.9■■■■□ 3.66
VEGFA-209ENST00000425836 KIAA1107Q9UPP5 1409 aa37.9■■■■□ 3.66
VEGFA-209ENST00000425836 HNRNPMP52272 730 aaKnown RBP eCLIP37.89■■■■□ 3.661e-12■■■■■ 34.3
VEGFA-209ENST00000425836 PLEKHH2Q8IVE3 1493 aa37.88■■■■□ 3.66
VEGFA-209ENST00000425836 FRMPD1Q5SYB0 1578 aa37.88■■■■□ 3.66
VEGFA-209ENST00000425836 AFAP1Q8N556 730 aa37.88■■■■□ 3.65
VEGFA-209ENST00000425836 TRAPPC8Q9Y2L5 1435 aa37.86■■■■□ 3.65
VEGFA-209ENST00000425836 SYCP2Q9BX26 1530 aa37.83■■■■□ 3.65
VEGFA-209ENST00000425836 CAMSAP2Q08AD1 1489 aa37.83■■■■□ 3.65
VEGFA-209ENST00000425836 RICTORQ6R327 1708 aa37.83■■■■□ 3.65
VEGFA-209ENST00000425836 ZNF518AQ6AHZ1 1483 aa37.82■■■■□ 3.65
VEGFA-209ENST00000425836 FGD6Q6ZV73 1430 aa37.8■■■■□ 3.64
VEGFA-209ENST00000425836 MBD5Q9P267 1494 aa37.79■■■■□ 3.64
VEGFA-209ENST00000425836 ZMYM4Q5VZL5 1548 aa37.75■■■■□ 3.63
VEGFA-209ENST00000425836 KDM5CP41229 1560 aa37.73■■■■□ 3.63
VEGFA-209ENST00000425836 MAGI2Q86UL8 1455 aa37.7■■■■□ 3.63
VEGFA-209ENST00000425836 RSPH4AQ5TD94 716 aa37.7■■■■□ 3.63
VEGFA-209ENST00000425836 PTPN23Q9H3S7 1636 aa37.69■■■■□ 3.62
VEGFA-209ENST00000425836 TCOF1Q13428 1488 aaKnown RBP37.69■■■■□ 3.62
VEGFA-209ENST00000425836 YEATS2Q9ULM3 1422 aa37.66■■■■□ 3.62
VEGFA-209ENST00000425836 SPAG9O60271 1321 aaKnown RBP37.66■■■■□ 3.62
VEGFA-209ENST00000425836 MLH3Q9UHC1 1453 aa37.65■■■■□ 3.62
VEGFA-209ENST00000425836 MYT1LQ9UL68 1186 aa37.65■■■■□ 3.62
VEGFA-209ENST00000425836 CCDC141Q6ZP82 1450 aa37.63■■■■□ 3.61
VEGFA-209ENST00000425836 ZFYVE16Q7Z3T8 1539 aa37.62■■■■□ 3.61
VEGFA-209ENST00000425836 ARHGEF5Q12774 1597 aa37.62■■■■□ 3.61
VEGFA-209ENST00000425836 FAM50AQ14320 339 aaKnown RBP37.61■■■■□ 3.61
VEGFA-209ENST00000425836 HECW2Q9P2P5 1572 aa37.59■■■■□ 3.61
VEGFA-209ENST00000425836 ARHGEF40Q8TER5 1519 aa37.58■■■■□ 3.61
VEGFA-209ENST00000425836 TSPY4P0CV99 314 aa37.56■■■■□ 3.6
VEGFA-209ENST00000425836 TSPY10P0CW01 314 aa37.56■■■■□ 3.6
VEGFA-209ENST00000425836 ABCC5O15440 1437 aa37.53■■■■□ 3.6
VEGFA-209ENST00000425836 RTEL1-TNFRSF6BF6WH68 1400 aa37.52■■■■□ 3.6
VEGFA-209ENST00000425836 ATP10AO60312 1499 aa37.51■■■■□ 3.6
VEGFA-209ENST00000425836 KIDINS220Q9ULH0 1771 aa37.51■■■■□ 3.59
VEGFA-209ENST00000425836 ATP7AQ04656 1500 aa37.5■■■■□ 3.59
VEGFA-209ENST00000425836 DAPK1P53355 1430 aa37.49■■■■□ 3.59
VEGFA-209ENST00000425836 RRBP1Q9P2E9 1410 aaKnown RBP37.49■■■■□ 3.59
VEGFA-209ENST00000425836 INO80Q9ULG1 1556 aaPredicted RBP37.48■■■■□ 3.59
VEGFA-209ENST00000425836 DIP2CQ9Y2E4 1556 aa37.47■■■■□ 3.59
VEGFA-209ENST00000425836 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.46■■■■□ 3.593e-7■■□□□ 14.3
VEGFA-209ENST00000425836 ABCA6Q8N139 1617 aa37.45■■■■□ 3.59
VEGFA-209ENST00000425836 C9orf84Q5VXU9 1444 aa37.45■■■■□ 3.59
VEGFA-209ENST00000425836 DNMT1P26358 1616 aaKnown RBP37.44■■■■□ 3.58
VEGFA-209ENST00000425836 SHANK2Q9UPX8 1470 aa37.4■■■■□ 3.58
VEGFA-209ENST00000425836 MAST1Q9Y2H9 1570 aa37.4■■■■□ 3.58
VEGFA-209ENST00000425836 ARID4BQ4LE39 1312 aaPredicted RBP37.39■■■■□ 3.58
VEGFA-209ENST00000425836 CHIC2Q9UKJ5 165 aa37.37■■■■□ 3.57
VEGFA-209ENST00000425836 REREQ9P2R6 1566 aa37.34■■■■□ 3.57
VEGFA-209ENST00000425836 PTPRKQ15262 1439 aa37.33■■■■□ 3.57
VEGFA-209ENST00000425836 A2MP01023 1474 aa37.33■■■■□ 3.57
VEGFA-209ENST00000425836 CROCC2H7BZ55 1655 aa37.32■■■■□ 3.57
VEGFA-209ENST00000425836 SIGLEC1Q9BZZ2 1709 aa37.31■■■■□ 3.56
VEGFA-209ENST00000425836 ITGAEP38570 1179 aa37.31■■■■□ 3.56
VEGFA-209ENST00000425836 DHX29Q7Z478 1369 aaKnown RBP37.29■■■■□ 3.56
VEGFA-209ENST00000425836 RRP7BPQ9NSQ0 103 aa37.27■■■■□ 3.56
VEGFA-209ENST00000425836 ANKRD30AQ9BXX3 1397 aa37.25■■■■□ 3.55
VEGFA-209ENST00000425836 AGLP35573 1532 aa37.25■■■■□ 3.55
VEGFA-209ENST00000425836 KDM4FA0A1W2PPD8 638 aa37.24■■■■□ 3.55
VEGFA-209ENST00000425836 ADGBQ8N7X0 1667 aa37.24■■■■□ 3.55
VEGFA-209ENST00000425836 NCOA1Q15788 1441 aa37.24■■■■□ 3.55
VEGFA-209ENST00000425836 PLXNC1O60486 1568 aa37.24■■■■□ 3.55
VEGFA-209ENST00000425836 KIF15Q9NS87 1388 aa37.22■■■■□ 3.55
VEGFA-209ENST00000425836 MLECQ14165 292 aa37.22■■■■□ 3.55
VEGFA-209ENST00000425836 ADGRL2O95490 1459 aa37.22■■■■□ 3.55
VEGFA-209ENST00000425836 ROCK1Q13464 1354 aa37.16■■■■□ 3.54
VEGFA-209ENST00000425836 BCORL1Q5H9F3 1711 aa37.15■■■■□ 3.54
VEGFA-209ENST00000425836 DUOX2Q9NRD8 1548 aa37.14■■■■□ 3.54
VEGFA-209ENST00000425836 KIF3BO15066 747 aa37.13■■■■□ 3.53
VEGFA-209ENST00000425836 GGT6Q6P531 493 aa37.08■■■■□ 3.53
VEGFA-209ENST00000425836 ADAMTSL3P82987 1691 aa37.07■■■■□ 3.52
VEGFA-209ENST00000425836 ERBINQ96RT1 1412 aa37.06■■■■□ 3.52
VEGFA-209ENST00000425836 ANKRD50Q9ULJ7 1429 aa37.01■■■■□ 3.51
VEGFA-209ENST00000425836 MADDQ8WXG6 1647 aa36.99■■■■□ 3.51
VEGFA-209ENST00000425836 EIF2AK4Q9P2K8 1649 aaKnown RBP36.97■■■■□ 3.51
VEGFA-209ENST00000425836 PPP6R1Q9UPN7 881 aa36.97■■■■□ 3.51
VEGFA-209ENST00000425836 ESF1Q9H501 851 aaKnown RBP36.94■■■■□ 3.5
VEGFA-209ENST00000425836 NAIPQ13075 1403 aa36.9■■■■□ 3.5
VEGFA-209ENST00000425836 PTPRMP28827 1452 aa36.89■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms