RNA–Protein interactions for RNA: ENST00000423536.5

SNHG17-204, Transcript of small nucleolar RNA host gene 17, human

TSL 2 BASIC

Gene SNHG17, Length 517 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG17-204	ENST00000423536	CSRNP3	Q8WYN3	585 aa		13.85	□□□□□ -0.19
SNHG17-204	ENST00000423536	ATP10A	O60312	1499 aa		13.85	□□□□□ -0.19
SNHG17-204	ENST00000423536	CFAP74	Q9C0B2	1584 aa		13.84	□□□□□ -0.19
SNHG17-204	ENST00000423536	PRX	Q9BXM0	1461 aa		13.84	□□□□□ -0.19
SNHG17-204	ENST00000423536	RICTOR	Q6R327	1708 aa		13.84	□□□□□ -0.19
SNHG17-204	ENST00000423536	FER1L4	A9Z1Z3	1794 aa		13.83	□□□□□ -0.19
SNHG17-204	ENST00000423536	PTPRT	O14522	1441 aa		13.82	□□□□□ -0.2
SNHG17-204	ENST00000423536	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.82	□□□□□ -0.2
SNHG17-204	ENST00000423536	PREX1	Q8TCU6	1659 aa		13.82	□□□□□ -0.2
SNHG17-204	ENST00000423536	TTC37	Q6PGP7	1564 aa		13.8	□□□□□ -0.2
SNHG17-204	ENST00000423536	HECW1	Q76N89	1606 aa		13.8	□□□□□ -0.2
SNHG17-204	ENST00000423536	SCAF1	Q9H7N4	1312 aa	Known RBP	13.8	□□□□□ -0.2
SNHG17-204	ENST00000423536	C9orf84	Q5VXU9	1444 aa		13.8	□□□□□ -0.2
SNHG17-204	ENST00000423536	NUP153	P49790	1475 aa	Known RBP	13.8	□□□□□ -0.2
SNHG17-204	ENST00000423536	AFAP1	Q8N556	730 aa		13.79	□□□□□ -0.2
SNHG17-204	ENST00000423536	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	8e-6	■□□□□ 8.1
SNHG17-204	ENST00000423536	SETD1B	Q9UPS6	1966 aa	Known RBP	13.78	□□□□□ -0.2
SNHG17-204	ENST00000423536	PLCH2	O75038	1416 aa		13.78	□□□□□ -0.2
SNHG17-204	ENST00000423536	ZMYM4	Q5VZL5	1548 aa		13.78	□□□□□ -0.2
SNHG17-204	ENST00000423536	STRC	Q7RTU9	1775 aa		13.77	□□□□□ -0.21
SNHG17-204	ENST00000423536	ARHGEF12	Q9NZN5	1544 aa		13.76	□□□□□ -0.21
SNHG17-204	ENST00000423536	TRAPPC8	Q9Y2L5	1435 aa		13.74	□□□□□ -0.21
SNHG17-204	ENST00000423536	NCKAP5L	Q9HCH0	1330 aa		13.74	□□□□□ -0.21
SNHG17-204	ENST00000423536	PIP4K2B	P78356	416 aa		13.74	□□□□□ -0.21
SNHG17-204	ENST00000423536	PHF23	Q9BUL5	403 aa	Predicted RBP	13.74	□□□□□ -0.21
SNHG17-204	ENST00000423536	IQSEC2	Q5JU85	1478 aa		13.74	□□□□□ -0.21
SNHG17-204	ENST00000423536	SIGLEC1	Q9BZZ2	1709 aa		13.73	□□□□□ -0.21
SNHG17-204	ENST00000423536	SAMD9	Q5K651	1589 aa		13.72	□□□□□ -0.21
SNHG17-204	ENST00000423536	TOM1	O60784	492 aa		13.71	□□□□□ -0.21
SNHG17-204	ENST00000423536	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.7	□□□□□ -0.22
SNHG17-204	ENST00000423536	PKD2	Q13563	968 aa		13.7	□□□□□ -0.22
SNHG17-204	ENST00000423536	LTBP4	Q8N2S1	1624 aa		13.68	□□□□□ -0.22
SNHG17-204	ENST00000423536	ZNF518A	Q6AHZ1	1483 aa		13.68	□□□□□ -0.22
SNHG17-204	ENST00000423536	HSPA1L	P34931	641 aa		13.67	□□□□□ -0.22
SNHG17-204	ENST00000423536	EHMT2	Q96KQ7	1210 aa		13.67	□□□□□ -0.22
SNHG17-204	ENST00000423536	UBTF	P17480	764 aa	Known RBP	13.66	□□□□□ -0.22
SNHG17-204	ENST00000423536	NCOA1	Q15788	1441 aa		13.65	□□□□□ -0.22
SNHG17-204	ENST00000423536	PPP6R1	Q9UPN7	881 aa		13.65	□□□□□ -0.22
SNHG17-204	ENST00000423536	CNTLN	Q9NXG0	1405 aa		13.64	□□□□□ -0.23
SNHG17-204	ENST00000423536	ARHGAP5	Q13017	1502 aa		13.64	□□□□□ -0.23
SNHG17-204	ENST00000423536	CDK13	Q14004	1512 aa	Known RBP	13.64	□□□□□ -0.23
SNHG17-204	ENST00000423536	ZMYM3	Q14202	1370 aa		13.63	□□□□□ -0.23
SNHG17-204	ENST00000423536	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.63	□□□□□ -0.23
SNHG17-204	ENST00000423536	CAMSAP1	Q5T5Y3	1602 aa		13.62	□□□□□ -0.23
SNHG17-204	ENST00000423536	CLIP1	P30622	1438 aa		13.62	□□□□□ -0.23
SNHG17-204	ENST00000423536	C3	P01024	1663 aa		13.62	□□□□□ -0.23
SNHG17-204	ENST00000423536	GGT6	Q6P531	493 aa		13.61	□□□□□ -0.23
SNHG17-204	ENST00000423536	SENP3	Q9H4L4	574 aa	Predicted RBP	13.61	□□□□□ -0.23
SNHG17-204	ENST00000423536	MYO5C	Q9NQX4	1742 aa		13.6	□□□□□ -0.23
SNHG17-204	ENST00000423536	MLH3	Q9UHC1	1453 aa		13.58	□□□□□ -0.24
SNHG17-204	ENST00000423536	NPAT	Q14207	1427 aa		13.57	□□□□□ -0.24
SNHG17-204	ENST00000423536	FMN1	Q68DA7	1419 aa		13.57	□□□□□ -0.24
SNHG17-204	ENST00000423536	AGL	P35573	1532 aa		13.56	□□□□□ -0.24
SNHG17-204	ENST00000423536	DIP2C	Q9Y2E4	1556 aa		13.56	□□□□□ -0.24
SNHG17-204	ENST00000423536	SPAG9	O60271	1321 aa	Known RBP	13.56	□□□□□ -0.24
SNHG17-204	ENST00000423536	EEA1	Q15075	1411 aa		13.56	□□□□□ -0.24
SNHG17-204	ENST00000423536	TRO	Q12816	1431 aa	Predicted RBP	13.55	□□□□□ -0.24
SNHG17-204	ENST00000423536	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.54	□□□□□ -0.24	3e-11	■■■■□ 26.2
SNHG17-204	ENST00000423536	KDM5C	P41229	1560 aa		13.54	□□□□□ -0.24
SNHG17-204	ENST00000423536	RERE	Q9P2R6	1566 aa		13.54	□□□□□ -0.24
SNHG17-204	ENST00000423536	KIF14	Q15058	1648 aa		13.53	□□□□□ -0.24
SNHG17-204	ENST00000423536	ANKLE2	Q86XL3	938 aa		13.53	□□□□□ -0.24
SNHG17-204	ENST00000423536	MED1	Q15648	1581 aa	Predicted RBP	13.52	□□□□□ -0.25
SNHG17-204	ENST00000423536	ABCA6	Q8N139	1617 aa		13.5	□□□□□ -0.25
SNHG17-204	ENST00000423536	PLA2R1	Q13018	1463 aa		13.49	□□□□□ -0.25
SNHG17-204	ENST00000423536	PTPRK	Q15262	1439 aa		13.49	□□□□□ -0.25
SNHG17-204	ENST00000423536	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.49	□□□□□ -0.25
SNHG17-204	ENST00000423536	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.49	□□□□□ -0.25
SNHG17-204	ENST00000423536	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.46	□□□□□ -0.25
SNHG17-204	ENST00000423536	CPS1	P31327	1500 aa		13.45	□□□□□ -0.26
SNHG17-204	ENST00000423536	TCOF1	Q13428	1488 aa	Known RBP	13.45	□□□□□ -0.26
SNHG17-204	ENST00000423536	SHANK2	Q9UPX8	1470 aa		13.45	□□□□□ -0.26
SNHG17-204	ENST00000423536	MROH2A	A6NES4	1674 aa		13.44	□□□□□ -0.26
SNHG17-204	ENST00000423536	CDC42BPB	Q9Y5S2	1711 aa		13.44	□□□□□ -0.26
SNHG17-204	ENST00000423536	KIDINS220	Q9ULH0	1771 aa		13.43	□□□□□ -0.26
SNHG17-204	ENST00000423536	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.43	□□□□□ -0.26
SNHG17-204	ENST00000423536	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.43	□□□□□ -0.26
SNHG17-204	ENST00000423536	CLTC	Q00610	1675 aa	Known RBP	13.43	□□□□□ -0.26
SNHG17-204	ENST00000423536	A2M	P01023	1474 aa		13.42	□□□□□ -0.26
SNHG17-204	ENST00000423536	WASHC2C	Q9Y4E1	1318 aa		13.41	□□□□□ -0.26
SNHG17-204	ENST00000423536	ABCC1	P33527	1531 aa		13.41	□□□□□ -0.26
SNHG17-204	ENST00000423536	CHIC1	Q5VXU3	224 aa		13.41	□□□□□ -0.26
SNHG17-204	ENST00000423536	A2ML1	A8K2U0	1454 aa		13.41	□□□□□ -0.26
SNHG17-204	ENST00000423536	KIF3B	O15066	747 aa		13.4	□□□□□ -0.26
SNHG17-204	ENST00000423536	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
SNHG17-204	ENST00000423536	ITSN2	Q9NZM3	1697 aa		13.4	□□□□□ -0.26
SNHG17-204	ENST00000423536	MYO3A	Q8NEV4	1616 aa		13.39	□□□□□ -0.27
SNHG17-204	ENST00000423536	TNR	Q92752	1358 aa		13.39	□□□□□ -0.27
SNHG17-204	ENST00000423536	ARHGAP35	Q9NRY4	1499 aa		13.39	□□□□□ -0.27
SNHG17-204	ENST00000423536	SAMD9L	Q8IVG5	1584 aa		13.39	□□□□□ -0.27
SNHG17-204	ENST00000423536	RGS17	Q9UGC6	210 aa	Predicted RBP	13.37	□□□□□ -0.27
SNHG17-204	ENST00000423536	PREX2	Q70Z35	1606 aa		13.37	□□□□□ -0.27
SNHG17-204	ENST00000423536	ZNF142	P52746	1687 aa	Predicted RBP	13.37	□□□□□ -0.27
SNHG17-204	ENST00000423536	DNMT1	P26358	1616 aa	Known RBP	13.36	□□□□□ -0.27
SNHG17-204	ENST00000423536	CCNB3	Q8WWL7	1395 aa		13.36	□□□□□ -0.27
SNHG17-204	ENST00000423536	CCDC18	Q5T9S5	1454 aa		13.36	□□□□□ -0.27
SNHG17-204	ENST00000423536	NPHP4	O75161	1426 aa	Predicted RBP	13.35	□□□□□ -0.27
SNHG17-204	ENST00000423536	PLEKHH2	Q8IVE3	1493 aa		13.35	□□□□□ -0.27
SNHG17-204	ENST00000423536	ATP7A	Q04656	1500 aa		13.34	□□□□□ -0.27
SNHG17-204	ENST00000423536	SYCP2	Q9BX26	1530 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms