RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 PDCL3Q9H2J4 239 aa4.41□□□□□ -1.7
SYNE1-212ENST00000423061 WASHC2AQ641Q2 1341 aa4.41□□□□□ -1.7
SYNE1-212ENST00000423061 KIAA1211Q6ZU35 1233 aa4.41□□□□□ -1.7
SYNE1-212ENST00000423061 RB1CC1Q8TDY2 1594 aa4.41□□□□□ -1.7
SYNE1-212ENST00000423061 SLKQ9H2G2 1235 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-212ENST00000423061 ZBTB9Q96C00 473 aa4.41□□□□□ -1.7
SYNE1-212ENST00000423061 MRS2Q9HD23 443 aa4.41□□□□□ -1.7
SYNE1-212ENST00000423061 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.4□□□□□ -1.7
SYNE1-212ENST00000423061 CGNQ9P2M7 1197 aaKnown RBP4.4□□□□□ -1.7
SYNE1-212ENST00000423061 TONSLQ96HA7 1378 aa4.4□□□□□ -1.7
SYNE1-212ENST00000423061 POGKQ9P215 609 aa4.4□□□□□ -1.7
SYNE1-212ENST00000423061 RSPH4AQ5TD94 716 aa4.4□□□□□ -1.71
SYNE1-212ENST00000423061 BECN1Q14457 450 aa4.4□□□□□ -1.71
SYNE1-212ENST00000423061 RBM25P49756 843 aaKnown RBP4.4□□□□□ -1.71
SYNE1-212ENST00000423061 TCERG1O14776 1098 aaKnown RBP4.4□□□□□ -1.71
SYNE1-212ENST00000423061 ZNF830Q96NB3 372 aaPredicted RBP4.4□□□□□ -1.71
SYNE1-212ENST00000423061 IGSF3O75054 1194 aa4.39□□□□□ -1.71
SYNE1-212ENST00000423061 UPF2Q9HAU5 1272 aaKnown RBP4.39□□□□□ -1.71
SYNE1-212ENST00000423061 WASHC2CQ9Y4E1 1318 aa4.39□□□□□ -1.71
SYNE1-212ENST00000423061 CBX1P83916 185 aa4.39□□□□□ -1.71
SYNE1-212ENST00000423061 MYH16Q9H6N6 1097 aa4.38□□□□□ -1.71
SYNE1-212ENST00000423061 CHMP4CQ96CF2 233 aa4.38□□□□□ -1.71
SYNE1-212ENST00000423061 SAMD1Q6SPF0 538 aaPredicted RBP4.38□□□□□ -1.71
SYNE1-212ENST00000423061 ESPNB1AK53 854 aa4.37□□□□□ -1.71
SYNE1-212ENST00000423061 CNPY4Q8N129 248 aa4.37□□□□□ -1.71
SYNE1-212ENST00000423061 MAP7D2Q96T17 732 aa4.37□□□□□ -1.71
SYNE1-212ENST00000423061 TAOK2Q9UL54 1235 aa4.37□□□□□ -1.71
SYNE1-212ENST00000423061 MPNDQ8N594 471 aa4.37□□□□□ -1.71
SYNE1-212ENST00000423061 CEP164Q9UPV0 1460 aa4.37□□□□□ -1.71
SYNE1-212ENST00000423061 SPDYE4A6NLX3 237 aa4.36□□□□□ -1.71
SYNE1-212ENST00000423061 TPRNQ4KMQ1 711 aa4.36□□□□□ -1.71
SYNE1-212ENST00000423061 MSNP26038 577 aaKnown RBP4.36□□□□□ -1.71
SYNE1-212ENST00000423061 FOXD1Q16676 465 aa4.36□□□□□ -1.71
SYNE1-212ENST00000423061 HDAC5Q9UQL6 1122 aa4.36□□□□□ -1.71
SYNE1-212ENST00000423061 SOX12O15370 315 aa4.36□□□□□ -1.71
SYNE1-212ENST00000423061 UQCRHLA0A096LP55 91 aa4.36□□□□□ -1.71
SYNE1-212ENST00000423061 UQCRHP07919 91 aa4.36□□□□□ -1.71
SYNE1-212ENST00000423061 HSP90B1P14625 803 aaKnown RBP4.35□□□□□ -1.71
SYNE1-212ENST00000423061 CCER2I3L3R5 266 aa4.35□□□□□ -1.71
SYNE1-212ENST00000423061 GPATCH11Q8N954 259 aa4.35□□□□□ -1.71
SYNE1-212ENST00000423061 TMC1Q8TDI8 760 aa4.35□□□□□ -1.71
SYNE1-212ENST00000423061 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-212ENST00000423061 SLC4A1APQ9BWU0 796 aaKnown RBP4.34□□□□□ -1.71
SYNE1-212ENST00000423061 XRCC6P12956 609 aaKnown RBP eCLIP4.34□□□□□ -1.71
SYNE1-212ENST00000423061 TNNT1P13805 278 aa4.34□□□□□ -1.71
SYNE1-212ENST00000423061 PANK2Q9BZ23 570 aa4.34□□□□□ -1.71
SYNE1-212ENST00000423061 SKAP1Q86WV1 359 aa4.34□□□□□ -1.71
SYNE1-212ENST00000423061 SMAP1Q8IYB5 467 aaPredicted RBP4.34□□□□□ -1.72
SYNE1-212ENST00000423061 ERICH4A6NGS2 130 aa4.34□□□□□ -1.72
SYNE1-212ENST00000423061 OS9Q13438 667 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-212ENST00000423061 CLGNO14967 610 aa4.33□□□□□ -1.72
SYNE1-212ENST00000423061 ZBTB22O15209 634 aa4.33□□□□□ -1.72
SYNE1-212ENST00000423061 EXOC6Q8TAG9 804 aa4.33□□□□□ -1.72
SYNE1-212ENST00000423061 PRDM4Q9UKN5 801 aa4.33□□□□□ -1.72
SYNE1-212ENST00000423061 FAM193AP78312 1265 aa4.33□□□□□ -1.72
SYNE1-212ENST00000423061 LOC102724159A0A0B4J2E5 919 aa4.33□□□□□ -1.72
SYNE1-212ENST00000423061 PWP2Q15269 919 aaKnown RBP4.33□□□□□ -1.72
SYNE1-212ENST00000423061 CCDC9Q9Y3X0 531 aaKnown RBP4.33□□□□□ -1.72
SYNE1-212ENST00000423061 PLCB2Q00722 1185 aa4.33□□□□□ -1.72
SYNE1-212ENST00000423061 FOXD4L1Q9NU39 408 aa4.33□□□□□ -1.72
SYNE1-212ENST00000423061 TEX2Q8IWB9 1127 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 TAF3Q5VWG9 929 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 FAM177BA6PVY3 158 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 BAZ1AQ9NRL2 1556 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-212ENST00000423061 MS4A1P11836 297 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 TSC1Q92574 1164 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 BANK1Q8NDB2 785 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 MRE11P49959 708 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 TRIM6-TRIM34B2RNG4 842 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 TRIM34Q9BYJ4 488 aa4.32□□□□□ -1.72
SYNE1-212ENST00000423061 XPCQ01831 940 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-212ENST00000423061 TMEM51Q9NW97 253 aa4.31□□□□□ -1.72
SYNE1-212ENST00000423061 NACADO15069 1562 aa4.31□□□□□ -1.72
SYNE1-212ENST00000423061 MYCNP04198 464 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-212ENST00000423061 RSF1Q96T23 1441 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-212ENST00000423061 TRAK2O60296 914 aa4.31□□□□□ -1.72
SYNE1-212ENST00000423061 BACH2Q9BYV9 841 aa4.31□□□□□ -1.72
SYNE1-212ENST00000423061 TNIKQ9UKE5 1360 aa4.31□□□□□ -1.72
SYNE1-212ENST00000423061 GTF2A1P52655 376 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-212ENST00000423061 GTPBP4Q9BZE4 634 aaKnown RBP4.3□□□□□ -1.72
SYNE1-212ENST00000423061 CLCN1P35523 988 aa4.3□□□□□ -1.72
SYNE1-212ENST00000423061 TOMM22Q9NS69 142 aa4.3□□□□□ -1.72
SYNE1-212ENST00000423061 DMTNQ08495 405 aa4.3□□□□□ -1.72
SYNE1-212ENST00000423061 LMOD3Q0VAK6 560 aa4.3□□□□□ -1.72
SYNE1-212ENST00000423061 RIPK4P57078 832 aa4.3□□□□□ -1.72
SYNE1-212ENST00000423061 PLIN1O60240 522 aa4.3□□□□□ -1.72
SYNE1-212ENST00000423061 CCDC94Q9BW85 323 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-212ENST00000423061 TMX1Q9H3N1 280 aa4.3□□□□□ -1.72
SYNE1-212ENST00000423061 TIGD1Q96MW7 591 aa4.29□□□□□ -1.72
SYNE1-212ENST00000423061 MTERF4Q7Z6M4 381 aaKnown RBP4.29□□□□□ -1.72
SYNE1-212ENST00000423061 PLCD4Q9BRC7 762 aa4.29□□□□□ -1.72
SYNE1-212ENST00000423061 OFD1O75665 1012 aa4.29□□□□□ -1.72
SYNE1-212ENST00000423061 GOLGA6L1Q8N7Z2 621 aa4.29□□□□□ -1.72
SYNE1-212ENST00000423061 RCAN3Q9UKA8 241 aa4.29□□□□□ -1.72
SYNE1-212ENST00000423061 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-212ENST00000423061 FOXD4L5Q5VV16 416 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-212ENST00000423061 FOXD4L4Q8WXT5 416 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-212ENST00000423061 BCCIPQ9P287 314 aaKnown RBP eCLIP4.29□□□□□ -1.72
SYNE1-212ENST00000423061 KIAA2012Q0VF49 1180 aa4.29□□□□□ -1.72
SYNE1-212ENST00000423061 CC2D1BQ5T0F9 858 aaKnown RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms