RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 KANK4Q5T7N3 995 aaPredicted RBP35.27■■■■□ 3.24
PTCD3-203ENST00000409783 ARHGAP5Q13017 1502 aa35.27■■■■□ 3.24
PTCD3-203ENST00000409783 EFCAB2Q5VUJ9 269 aa35.26■■■■□ 3.24
PTCD3-203ENST00000409783 SUPT6HQ7KZ85 1726 aaKnown RBP35.25■■■■□ 3.23
PTCD3-203ENST00000409783 FRMPD1Q5SYB0 1578 aa35.22■■■■□ 3.23
PTCD3-203ENST00000409783 NCOA2Q15596 1464 aa35.22■■■■□ 3.23
PTCD3-203ENST00000409783 ADGRL1O94910 1474 aa35.2■■■■□ 3.23
PTCD3-203ENST00000409783 RICTORQ6R327 1708 aa35.19■■■■□ 3.22
PTCD3-203ENST00000409783 CCNB3Q8WWL7 1395 aa35.19■■■■□ 3.22
PTCD3-203ENST00000409783 DENND4BO75064 1496 aaPredicted RBP35.18■■■■□ 3.22
PTCD3-203ENST00000409783 RAPGEF3O95398 923 aa35.18■■■■□ 3.22
PTCD3-203ENST00000409783 SCAPERQ9BY12 1400 aa35.15■■■■□ 3.22
PTCD3-203ENST00000409783 APLP2Q06481 763 aa35.15■■■■□ 3.22
PTCD3-203ENST00000409783 ITSN2Q9NZM3 1697 aa35.13■■■■□ 3.21
PTCD3-203ENST00000409783 SAMD9LQ8IVG5 1584 aa35.11■■■■□ 3.21
PTCD3-203ENST00000409783 ABCC1P33527 1531 aa35.11■■■■□ 3.21
PTCD3-203ENST00000409783 POGZQ7Z3K3 1410 aa35.09■■■■□ 3.21
PTCD3-203ENST00000409783 ARHGEF12Q9NZN5 1544 aa35.08■■■■□ 3.21
PTCD3-203ENST00000409783 CFDP1Q9UEE9 299 aaPredicted RBP35.07■■■■□ 3.2
PTCD3-203ENST00000409783 ZMYM4Q5VZL5 1548 aa35.06■■■■□ 3.2
PTCD3-203ENST00000409783 ZNF777Q9ULD5 760 aaPredicted RBP35.01■■■■□ 3.2
PTCD3-203ENST00000409783 KDM5CP41229 1560 aa34.99■■■■□ 3.19
PTCD3-203ENST00000409783 TRAPPC8Q9Y2L5 1435 aa34.98■■■■□ 3.19
PTCD3-203ENST00000409783 ZNF518AQ6AHZ1 1483 aa34.98■■■■□ 3.19
PTCD3-203ENST00000409783 SYCP2Q9BX26 1530 aa34.97■■■■□ 3.19
PTCD3-203ENST00000409783 KIAA1107Q9UPP5 1409 aa34.97■■■■□ 3.19
PTCD3-203ENST00000409783 ZNF644Q9H582 1327 aaPredicted RBP34.96■■■■□ 3.19
PTCD3-203ENST00000409783 PLEKHH2Q8IVE3 1493 aa34.96■■■■□ 3.19
PTCD3-203ENST00000409783 AFAP1Q8N556 730 aa34.95■■■■□ 3.19
PTCD3-203ENST00000409783 MYOM3Q5VTT5 1437 aa34.94■■■■□ 3.18
PTCD3-203ENST00000409783 MAGI2Q86UL8 1455 aa34.93■■■■□ 3.18
PTCD3-203ENST00000409783 ARHGEF40Q8TER5 1519 aa34.92■■■■□ 3.18
PTCD3-203ENST00000409783 HNRNPMP52272 730 aaKnown RBP eCLIP34.9■■■■□ 3.18
PTCD3-203ENST00000409783 YEATS2Q9ULM3 1422 aa34.89■■■■□ 3.18
PTCD3-203ENST00000409783 ZFYVE16Q7Z3T8 1539 aa34.89■■■■□ 3.18
PTCD3-203ENST00000409783 CAMSAP2Q08AD1 1489 aa34.89■■■■□ 3.18
PTCD3-203ENST00000409783 MBD5Q9P267 1494 aa34.88■■■■□ 3.17
PTCD3-203ENST00000409783 MIA2Q96PC5 1412 aa34.87■■■■□ 3.17
PTCD3-203ENST00000409783 HECW2Q9P2P5 1572 aa34.86■■■■□ 3.17
PTCD3-203ENST00000409783 MLH3Q9UHC1 1453 aa34.84■■■■□ 3.17
PTCD3-203ENST00000409783 KIDINS220Q9ULH0 1771 aa34.8■■■■□ 3.16
PTCD3-203ENST00000409783 SIGLEC1Q9BZZ2 1709 aa34.76■■■■□ 3.16
PTCD3-203ENST00000409783 FGD6Q6ZV73 1430 aa34.76■■■■□ 3.16
PTCD3-203ENST00000409783 ABCA6Q8N139 1617 aa34.76■■■■□ 3.15
PTCD3-203ENST00000409783 ARHGEF5Q12774 1597 aa34.75■■■■□ 3.15
PTCD3-203ENST00000409783 DIP2CQ9Y2E4 1556 aa34.75■■■■□ 3.15
PTCD3-203ENST00000409783 INO80Q9ULG1 1556 aaPredicted RBP34.74■■■■□ 3.15
PTCD3-203ENST00000409783 ATP10AO60312 1499 aa34.74■■■■□ 3.15
PTCD3-203ENST00000409783 PTPN23Q9H3S7 1636 aa34.73■■■■□ 3.15
PTCD3-203ENST00000409783 CCDC141Q6ZP82 1450 aa34.72■■■■□ 3.15
PTCD3-203ENST00000409783 PPARGC1BQ86YN6 1023 aaKnown RBP34.71■■■■□ 3.15
PTCD3-203ENST00000409783 SPAG9O60271 1321 aaKnown RBP34.71■■■■□ 3.15
PTCD3-203ENST00000409783 TCOF1Q13428 1488 aaKnown RBP34.71■■■■□ 3.15
PTCD3-203ENST00000409783 KDM4FA0A1W2PPD8 638 aa34.7■■■■□ 3.15
PTCD3-203ENST00000409783 ATP7AQ04656 1500 aa34.7■■■■□ 3.14
PTCD3-203ENST00000409783 RSPH4AQ5TD94 716 aa34.68■■■■□ 3.14
PTCD3-203ENST00000409783 C9orf84Q5VXU9 1444 aa34.68■■■■□ 3.14
PTCD3-203ENST00000409783 REREQ9P2R6 1566 aa34.66■■■■□ 3.14
PTCD3-203ENST00000409783 MYT1LQ9UL68 1186 aa34.66■■■■□ 3.14
PTCD3-203ENST00000409783 RTEL1-TNFRSF6BF6WH68 1400 aa34.64■■■■□ 3.14
PTCD3-203ENST00000409783 BCORL1Q5H9F3 1711 aa34.61■■■■□ 3.13
PTCD3-203ENST00000409783 MAST1Q9Y2H9 1570 aa34.57■■■■□ 3.13
PTCD3-203ENST00000409783 ARID4BQ4LE39 1312 aaPredicted RBP34.57■■■■□ 3.13
PTCD3-203ENST00000409783 ADAMTSL3P82987 1691 aa34.57■■■■□ 3.13
PTCD3-203ENST00000409783 DNMT1P26358 1616 aaKnown RBP34.55■■■■□ 3.12
PTCD3-203ENST00000409783 ABCC5O15440 1437 aa34.55■■■■□ 3.12
PTCD3-203ENST00000409783 CROCC2H7BZ55 1655 aa34.54■■■■□ 3.12
PTCD3-203ENST00000409783 AGLP35573 1532 aa34.54■■■■□ 3.12
PTCD3-203ENST00000409783 ADGBQ8N7X0 1667 aa34.54■■■■□ 3.12
PTCD3-203ENST00000409783 TSPY4P0CV99 314 aa34.52■■■■□ 3.12
PTCD3-203ENST00000409783 TSPY10P0CW01 314 aa34.52■■■■□ 3.12
PTCD3-203ENST00000409783 PLXNC1O60486 1568 aa34.52■■■■□ 3.12
PTCD3-203ENST00000409783 DAPK1P53355 1430 aa34.5■■■■□ 3.11
PTCD3-203ENST00000409783 A2MP01023 1474 aa34.5■■■■□ 3.11
PTCD3-203ENST00000409783 SHANK2Q9UPX8 1470 aa34.48■■■■□ 3.11
PTCD3-203ENST00000409783 FAM50AQ14320 339 aaKnown RBP34.45■■■■□ 3.11
PTCD3-203ENST00000409783 MADDQ8WXG6 1647 aa34.44■■■■□ 3.1
PTCD3-203ENST00000409783 DHX29Q7Z478 1369 aaKnown RBP34.41■■■■□ 3.1
PTCD3-203ENST00000409783 MLECQ14165 292 aa34.4■■■■□ 3.1
PTCD3-203ENST00000409783 RRBP1Q9P2E9 1410 aaKnown RBP34.38■■■■□ 3.09
PTCD3-203ENST00000409783 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.38■■■■□ 3.09
PTCD3-203ENST00000409783 FER1L4A9Z1Z3 1794 aa34.36■■■■□ 3.09
PTCD3-203ENST00000409783 RIMS1Q86UR5 1692 aaKnown RBP34.35■■■■□ 3.09
PTCD3-203ENST00000409783 AEBP2Q6ZN18 517 aaPredicted RBP34.33■■■■□ 3.09
PTCD3-203ENST00000409783 PTPRKQ15262 1439 aa34.32■■■■□ 3.08
PTCD3-203ENST00000409783 ADGRL2O95490 1459 aa34.31■■■■□ 3.08
PTCD3-203ENST00000409783 PTPRMP28827 1452 aa34.31■■■■□ 3.08
PTCD3-203ENST00000409783 CHIC2Q9UKJ5 165 aa34.29■■■■□ 3.08
PTCD3-203ENST00000409783 DUOX2Q9NRD8 1548 aa34.28■■■■□ 3.08
PTCD3-203ENST00000409783 NCOA1Q15788 1441 aa34.28■■■■□ 3.08
PTCD3-203ENST00000409783 KIF15Q9NS87 1388 aa34.27■■■■□ 3.08
PTCD3-203ENST00000409783 ANKRD30AQ9BXX3 1397 aa34.24■■■■□ 3.07
PTCD3-203ENST00000409783 RRP7BPQ9NSQ0 103 aa34.24■■■■□ 3.07
PTCD3-203ENST00000409783 EIF2AK4Q9P2K8 1649 aaKnown RBP34.23■■■■□ 3.07
PTCD3-203ENST00000409783 KIF3BO15066 747 aa34.21■■■■□ 3.07
PTCD3-203ENST00000409783 GGT6Q6P531 493 aa34.19■■■■□ 3.06
PTCD3-203ENST00000409783 RNF17Q9BXT8 1623 aaKnown RBP34.18■■■■□ 3.06
PTCD3-203ENST00000409783 ERBINQ96RT1 1412 aa34.17■■■■□ 3.06
PTCD3-203ENST00000409783 ROCK1Q13464 1354 aa34.14■■■■□ 3.06
PTCD3-203ENST00000409783 PPP6R1Q9UPN7 881 aa34.14■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms