RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 TTC37Q6PGP7 1564 aa23.42■■□□□ 1.34
NIF3L1-205ENST00000409588 FYCO1Q9BQS8 1478 aa23.39■■□□□ 1.34
NIF3L1-205ENST00000409588 KIF14Q15058 1648 aa23.37■■□□□ 1.33
NIF3L1-205ENST00000409588 MAGI2Q86UL8 1455 aa23.37■■□□□ 1.33
NIF3L1-205ENST00000409588 SCAPERQ9BY12 1400 aa23.35■■□□□ 1.33
NIF3L1-205ENST00000409588 FRMPD1Q5SYB0 1578 aa23.33■■□□□ 1.33
NIF3L1-205ENST00000409588 PCF11O94913 1555 aaKnown RBP23.32■■□□□ 1.32
NIF3L1-205ENST00000409588 RICTORQ6R327 1708 aa23.32■■□□□ 1.32
NIF3L1-205ENST00000409588 MYO5CQ9NQX4 1742 aa23.32■■□□□ 1.32
NIF3L1-205ENST00000409588 ARID4BQ4LE39 1312 aaPredicted RBP23.31■■□□□ 1.32
NIF3L1-205ENST00000409588 ZMYM4Q5VZL5 1548 aa23.3■■□□□ 1.32
NIF3L1-205ENST00000409588 LRRIQ1Q96JM4 1722 aa23.3■■□□□ 1.32
NIF3L1-205ENST00000409588 POGZQ7Z3K3 1410 aa23.28■■□□□ 1.32
NIF3L1-205ENST00000409588 ARHGAP5Q13017 1502 aa23.27■■□□□ 1.32
NIF3L1-205ENST00000409588 ARHGEF40Q8TER5 1519 aa23.25■■□□□ 1.31
NIF3L1-205ENST00000409588 ZNF518AQ6AHZ1 1483 aa23.24■■□□□ 1.31
NIF3L1-205ENST00000409588 CEP162Q5TB80 1403 aa23.24■■□□□ 1.31
NIF3L1-205ENST00000409588 ZFYVE16Q7Z3T8 1539 aa23.23■■□□□ 1.31
NIF3L1-205ENST00000409588 ADAMTSL3P82987 1691 aa23.2■■□□□ 1.3
NIF3L1-205ENST00000409588 AFAP1Q8N556 730 aa23.2■■□□□ 1.3
NIF3L1-205ENST00000409588 ATP10AO60312 1499 aa23.19■■□□□ 1.3
NIF3L1-205ENST00000409588 YEATS2Q9ULM3 1422 aa23.18■■□□□ 1.3
NIF3L1-205ENST00000409588 MTUS2Q5JR59 1369 aa23.18■■□□□ 1.3
NIF3L1-205ENST00000409588 BCORL1Q5H9F3 1711 aa23.18■■□□□ 1.3
NIF3L1-205ENST00000409588 PTPRMP28827 1452 aa23.17■■□□□ 1.3
NIF3L1-205ENST00000409588 CDC42BPBQ9Y5S2 1711 aa23.16■■□□□ 1.3
NIF3L1-205ENST00000409588 PREX2Q70Z35 1606 aa23.16■■□□□ 1.3
NIF3L1-205ENST00000409588 MYT1LQ9UL68 1186 aa23.14■■□□□ 1.29
NIF3L1-205ENST00000409588 KDM5CP41229 1560 aa23.14■■□□□ 1.29
NIF3L1-205ENST00000409588 GPATCH8Q9UKJ3 1502 aaKnown RBP23.13■■□□□ 1.29
NIF3L1-205ENST00000409588 MLH3Q9UHC1 1453 aa23.13■■□□□ 1.29
NIF3L1-205ENST00000409588 LOC105371045A0A1W2PR82 267 aa23.13■■□□□ 1.29
NIF3L1-205ENST00000409588 CFDP1Q9UEE9 299 aaPredicted RBP23.13■■□□□ 1.29
NIF3L1-205ENST00000409588 C9orf84Q5VXU9 1444 aa23.13■■□□□ 1.29
NIF3L1-205ENST00000409588 CCNB3Q8WWL7 1395 aa23.13■■□□□ 1.29
NIF3L1-205ENST00000409588 KIAA1107Q9UPP5 1409 aa23.09■■□□□ 1.29
NIF3L1-205ENST00000409588 ABCC1P33527 1531 aa23.09■■□□□ 1.29
NIF3L1-205ENST00000409588 CDC42BPAQ5VT25 1732 aa23.09■■□□□ 1.29
NIF3L1-205ENST00000409588 ZNF777Q9ULD5 760 aaPredicted RBP23.09■■□□□ 1.29
NIF3L1-205ENST00000409588 PLEKHH2Q8IVE3 1493 aa23.09■■□□□ 1.29
NIF3L1-205ENST00000409588 TRAPPC8Q9Y2L5 1435 aa23.07■■□□□ 1.28
NIF3L1-205ENST00000409588 ARHGEF12Q9NZN5 1544 aa23.06■■□□□ 1.28
NIF3L1-205ENST00000409588 HECW2Q9P2P5 1572 aa23.06■■□□□ 1.28
NIF3L1-205ENST00000409588 MADDQ8WXG6 1647 aa23.05■■□□□ 1.28
NIF3L1-205ENST00000409588 EHBP1L1Q8N3D4 1523 aa23.04■■□□□ 1.28
NIF3L1-205ENST00000409588 REREQ9P2R6 1566 aa23.04■■□□□ 1.28
NIF3L1-205ENST00000409588 MLECQ14165 292 aa23.03■■□□□ 1.28
NIF3L1-205ENST00000409588 VPS8Q8N3P4 1428 aa23.02■■□□□ 1.28
NIF3L1-205ENST00000409588 HNRNPMP52272 730 aaKnown RBP eCLIP23.02■■□□□ 1.28
NIF3L1-205ENST00000409588 ITSN2Q9NZM3 1697 aa23.01■■□□□ 1.27
NIF3L1-205ENST00000409588 RSPH4AQ5TD94 716 aa23.01■■□□□ 1.27
NIF3L1-205ENST00000409588 SPAG9O60271 1321 aaKnown RBP23.01■■□□□ 1.27
NIF3L1-205ENST00000409588 AGLP35573 1532 aa22.98■■□□□ 1.27
NIF3L1-205ENST00000409588 SAMD9LQ8IVG5 1584 aa22.98■■□□□ 1.27
NIF3L1-205ENST00000409588 PPP4R3CPQ6ZMV5 832 aa22.98■■□□□ 1.27
NIF3L1-205ENST00000409588 DIP2CQ9Y2E4 1556 aa22.97■■□□□ 1.27
NIF3L1-205ENST00000409588 RIMS1Q86UR5 1692 aaKnown RBP22.97■■□□□ 1.27
NIF3L1-205ENST00000409588 ESF1Q9H501 851 aaKnown RBP22.96■■□□□ 1.27
NIF3L1-205ENST00000409588 SIGLEC1Q9BZZ2 1709 aa22.96■■□□□ 1.27
NIF3L1-205ENST00000409588 MAP3K1Q13233 1512 aa22.95■■□□□ 1.26
NIF3L1-205ENST00000409588 SYCP2Q9BX26 1530 aa22.94■■□□□ 1.26
NIF3L1-205ENST00000409588 KIDINS220Q9ULH0 1771 aa22.93■■□□□ 1.26
NIF3L1-205ENST00000409588 TIAM1Q13009 1591 aa22.93■■□□□ 1.26
NIF3L1-205ENST00000409588 ABCA6Q8N139 1617 aa22.92■■□□□ 1.26
NIF3L1-205ENST00000409588 NCOA2Q15596 1464 aa22.92■■□□□ 1.26
NIF3L1-205ENST00000409588 SUPT6HQ7KZ85 1726 aaKnown RBP22.91■■□□□ 1.26
NIF3L1-205ENST00000409588 FER1L4A9Z1Z3 1794 aa22.91■■□□□ 1.26
NIF3L1-205ENST00000409588 RTEL1-TNFRSF6BF6WH68 1400 aa22.9■■□□□ 1.26
NIF3L1-205ENST00000409588 ZNF644Q9H582 1327 aaPredicted RBP22.89■■□□□ 1.26
NIF3L1-205ENST00000409588 APLP2Q06481 763 aa22.89■■□□□ 1.25
NIF3L1-205ENST00000409588 LRRC9Q6ZRR7 1453 aa22.89■■□□□ 1.25
NIF3L1-205ENST00000409588 MBD5Q9P267 1494 aa22.88■■□□□ 1.25
NIF3L1-205ENST00000409588 CNTLNQ9NXG0 1405 aa22.87■■□□□ 1.25
NIF3L1-205ENST00000409588 ATP7AQ04656 1500 aa22.87■■□□□ 1.25
NIF3L1-205ENST00000409588 LMTK3Q96Q04 1460 aa22.86■■□□□ 1.25
NIF3L1-205ENST00000409588 TSPY4P0CV99 314 aa22.83■■□□□ 1.25
NIF3L1-205ENST00000409588 TSPY10P0CW01 314 aa22.83■■□□□ 1.25
NIF3L1-205ENST00000409588 A2MP01023 1474 aa22.83■■□□□ 1.25
NIF3L1-205ENST00000409588 INO80Q9ULG1 1556 aaPredicted RBP22.82■■□□□ 1.24
NIF3L1-205ENST00000409588 CEBPAP49715 358 aaPredicted RBP22.82■■□□□ 1.24
NIF3L1-205ENST00000409588 SETD1BQ9UPS6 1966 aaKnown RBP22.81■■□□□ 1.24
NIF3L1-205ENST00000409588 DCAF8L1A6NGE4 600 aa22.8■■□□□ 1.24
NIF3L1-205ENST00000409588 CACNB1Q02641 598 aaPredicted RBP22.8■■□□□ 1.24
NIF3L1-205ENST00000409588 KANK4Q5T7N3 995 aaPredicted RBP22.8■■□□□ 1.24
NIF3L1-205ENST00000409588 MIA2Q96PC5 1412 aa22.79■■□□□ 1.24
NIF3L1-205ENST00000409588 CCDC141Q6ZP82 1450 aa22.79■■□□□ 1.24
NIF3L1-205ENST00000409588 DHX29Q7Z478 1369 aaKnown RBP22.78■■□□□ 1.24
NIF3L1-205ENST00000409588 CAMSAP2Q08AD1 1489 aa22.77■■□□□ 1.24
NIF3L1-205ENST00000409588 PLXNC1O60486 1568 aa22.76■■□□□ 1.23
NIF3L1-205ENST00000409588 ADGBQ8N7X0 1667 aa22.75■■□□□ 1.23
NIF3L1-205ENST00000409588 HOXD11P31277 338 aaPredicted RBP22.74■■□□□ 1.23
NIF3L1-205ENST00000409588 HSPA2P54652 639 aa22.74■■□□□ 1.23
NIF3L1-205ENST00000409588 GGT6Q6P531 493 aa22.74■■□□□ 1.23
NIF3L1-205ENST00000409588 ZMYM3Q14202 1370 aa22.74■■□□□ 1.23
NIF3L1-205ENST00000409588 UHRF1BP1Q6BDS2 1440 aa22.74■■□□□ 1.23
NIF3L1-205ENST00000409588 ARHGEF5Q12774 1597 aa22.73■■□□□ 1.23
NIF3L1-205ENST00000409588 MYOM3Q5VTT5 1437 aa22.73■■□□□ 1.23
NIF3L1-205ENST00000409588 PREX1Q8TCU6 1659 aa22.72■■□□□ 1.23
NIF3L1-205ENST00000409588 NPATQ14207 1427 aa22.72■■□□□ 1.23
NIF3L1-205ENST00000409588 MROH2AA6NES4 1674 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms