RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 NISCHQ9Y2I1 1504 aa35.71■■■■□ 3.31
NIF3L1-205ENST00000409588 AEBP2Q6ZN18 517 aaPredicted RBP35.17■■■■□ 3.22
NIF3L1-205ENST00000409588 CHIC1Q5VXU3 224 aa33.04■■■□□ 2.88
NIF3L1-205ENST00000409588 CCDC180Q9P1Z9 1646 aa31.88■■■□□ 2.69
NIF3L1-205ENST00000409588 ABCC9O60706 1549 aa31.49■■■□□ 2.63
NIF3L1-205ENST00000409588 RB1CC1Q8TDY2 1594 aa30.23■■■□□ 2.43
NIF3L1-205ENST00000409588 NACADO15069 1562 aa30.14■■■□□ 2.42
NIF3L1-205ENST00000409588 DCAF8L2P0C7V8 631 aa30.03■■■□□ 2.4
NIF3L1-205ENST00000409588 SENP3Q9H4L4 574 aaPredicted RBP29.97■■■□□ 2.39
NIF3L1-205ENST00000409588 MYO15BQ96JP2 1530 aa29.91■■■□□ 2.38
NIF3L1-205ENST00000409588 ZCCHC6Q5VYS8 1495 aaKnown RBP29.62■■■□□ 2.33
NIF3L1-205ENST00000409588 DCAF1Q9Y4B6 1507 aa29.61■■■□□ 2.33
NIF3L1-205ENST00000409588 PHF23Q9BUL5 403 aaPredicted RBP29.6■■■□□ 2.33
NIF3L1-205ENST00000409588 PABPN1Q86U42 306 aaKnown RBP eCLIP29.41■■■□□ 2.3
NIF3L1-205ENST00000409588 UNC13AQ9UPW8 1703 aa29.35■■■□□ 2.29
NIF3L1-205ENST00000409588 DNAJC5BQ9UF47 199 aa29.28■■■□□ 2.28
NIF3L1-205ENST00000409588 BICRAQ9NZM4 1560 aa29.22■■■□□ 2.27
NIF3L1-205ENST00000409588 SHROOM4Q9ULL8 1493 aa29.08■■■□□ 2.25
NIF3L1-205ENST00000409588 SCRIBQ14160 1630 aa28.94■■■□□ 2.22
NIF3L1-205ENST00000409588 EIF4G1Q04637 1599 aaKnown RBP28.52■■■□□ 2.16
NIF3L1-205ENST00000409588 CC2D2AQ9P2K1 1620 aa28.48■■■□□ 2.15
NIF3L1-205ENST00000409588 CECR2Q9BXF3 1484 aa28.4■■■□□ 2.14
NIF3L1-205ENST00000409588 FOXD1Q16676 465 aa28.03■■■□□ 2.08
NIF3L1-205ENST00000409588 NCAPD3P42695 1498 aa27.84■■■□□ 2.05
NIF3L1-205ENST00000409588 ATAD2BQ9ULI0 1458 aa27.73■■■□□ 2.03
NIF3L1-205ENST00000409588 SMARCA4P51532 1647 aa27.72■■■□□ 2.03
NIF3L1-205ENST00000409588 BAZ1AQ9NRL2 1556 aaPredicted RBP27.72■■■□□ 2.03
NIF3L1-205ENST00000409588 SMARCA2P51531 1590 aa27.71■■■□□ 2.03
NIF3L1-205ENST00000409588 HMGXB3Q12766 1538 aa27.6■■■□□ 2.01
NIF3L1-205ENST00000409588 PEG3Q9GZU2 1588 aa27.53■■■□□ 2
NIF3L1-205ENST00000409588 BAZ1BQ9UIG0 1483 aaKnown RBP27.47■■□□□ 1.99
NIF3L1-205ENST00000409588 MROH2BQ7Z745 1585 aa27.43■■□□□ 1.98
NIF3L1-205ENST00000409588 ERCC6Q03468 1493 aa27.24■■□□□ 1.95
NIF3L1-205ENST00000409588 CUX2O14529 1486 aa27.14■■□□□ 1.94
NIF3L1-205ENST00000409588 LAMC3Q9Y6N6 1575 aa27.11■■□□□ 1.93
NIF3L1-205ENST00000409588 NESP48681 1621 aa27.11■■□□□ 1.93
NIF3L1-205ENST00000409588 WIZO95785 1651 aa27.08■■□□□ 1.93
NIF3L1-205ENST00000409588 RSF1Q96T23 1441 aaPredicted RBP27.07■■□□□ 1.92
NIF3L1-205ENST00000409588 PDS5BQ9NTI5 1447 aa27.02■■□□□ 1.92
NIF3L1-205ENST00000409588 CADPSQ9ULU8 1353 aa27.01■■□□□ 1.91
NIF3L1-205ENST00000409588 TOP2AP11388 1531 aaKnown RBP26.85■■□□□ 1.89
NIF3L1-205ENST00000409588 DNAJC5Q9H3Z4 198 aa26.8■■□□□ 1.88
NIF3L1-205ENST00000409588 THOC2Q8NI27 1593 aaKnown RBP26.77■■□□□ 1.88
NIF3L1-205ENST00000409588 CFTRP13569 1480 aa26.74■■□□□ 1.87
NIF3L1-205ENST00000409588 KIF21AQ7Z4S6 1674 aa26.73■■□□□ 1.87
NIF3L1-205ENST00000409588 MRC2Q9UBG0 1479 aa26.67■■□□□ 1.86
NIF3L1-205ENST00000409588 FANCD2Q9BXW9 1451 aa26.62■■□□□ 1.85
NIF3L1-205ENST00000409588 CEP164Q9UPV0 1460 aa26.62■■□□□ 1.85
NIF3L1-205ENST00000409588 CCDC88BA6NC98 1476 aa26.56■■□□□ 1.84
NIF3L1-205ENST00000409588 WDR62O43379 1518 aa26.56■■□□□ 1.84
NIF3L1-205ENST00000409588 PRDM2Q13029 1718 aa26.36■■□□□ 1.81
NIF3L1-205ENST00000409588 URB2Q14146 1524 aaKnown RBP26.33■■□□□ 1.81
NIF3L1-205ENST00000409588 MSH5O43196 834 aa26.29■■□□□ 1.8
NIF3L1-205ENST00000409588 ABCC8Q09428 1581 aa26.28■■□□□ 1.8
NIF3L1-205ENST00000409588 POTEDQ86YR6 584 aa26.27■■□□□ 1.8
NIF3L1-205ENST00000409588 PLPPR3Q6T4P5 718 aa26.23■■□□□ 1.79
NIF3L1-205ENST00000409588 TOPBP1Q92547 1522 aa26.14■■□□□ 1.77
NIF3L1-205ENST00000409588 IFT140Q96RY7 1462 aa26.12■■□□□ 1.77
NIF3L1-205ENST00000409588 SUPT5HO00267 1087 aaKnown RBP26.1■■□□□ 1.77
NIF3L1-205ENST00000409588 PIAS4Q8N2W9 510 aaPredicted RBP26.08■■□□□ 1.77
NIF3L1-205ENST00000409588 DNMBPQ6XZF7 1577 aa26.07■■□□□ 1.76
NIF3L1-205ENST00000409588 OSCARQ8IYS5 282 aa26.05■■□□□ 1.76
NIF3L1-205ENST00000409588 PPP6R1Q9UPN7 881 aa26.01■■□□□ 1.75
NIF3L1-205ENST00000409588 ZNF608Q9ULD9 1512 aaPredicted RBP25.93■■□□□ 1.74
NIF3L1-205ENST00000409588 POLA1P09884 1462 aaPredicted RBP25.88■■□□□ 1.73
NIF3L1-205ENST00000409588 ADRA2BP18089 450 aa25.88■■□□□ 1.73
NIF3L1-205ENST00000409588 SOGA1O94964 1423 aa25.86■■□□□ 1.73
NIF3L1-205ENST00000409588 TARBP1Q13395 1621 aaKnown RBP25.85■■□□□ 1.73
NIF3L1-205ENST00000409588 AQRO60306 1485 aaKnown RBP eCLIP25.79■■□□□ 1.72
NIF3L1-205ENST00000409588 EIF4G3O43432 1585 aaKnown RBP25.78■■□□□ 1.72
NIF3L1-205ENST00000409588 CUX1P39880 1505 aa25.76■■□□□ 1.71
NIF3L1-205ENST00000409588 FGD5Q6ZNL6 1462 aa25.75■■□□□ 1.71
NIF3L1-205ENST00000409588 WDR97A6NE52 1622 aa25.74■■□□□ 1.71
NIF3L1-205ENST00000409588 RAD54L2Q9Y4B4 1467 aa25.74■■□□□ 1.71
NIF3L1-205ENST00000409588 TDRD9Q8NDG6 1382 aaKnown RBP25.7■■□□□ 1.71
NIF3L1-205ENST00000409588 TRIM41Q8WV44 630 aa25.63■■□□□ 1.69
NIF3L1-205ENST00000409588 FBLN2P98095 1184 aa25.61■■□□□ 1.69
NIF3L1-205ENST00000409588 GRIN2BQ13224 1484 aa25.58■■□□□ 1.69
NIF3L1-205ENST00000409588 WRNQ14191 1432 aaPredicted RBP eCLIP25.56■■□□□ 1.68
NIF3L1-205ENST00000409588 MAGI1Q96QZ7 1491 aaPredicted RBP25.55■■□□□ 1.68
NIF3L1-205ENST00000409588 ABCA10Q8WWZ4 1543 aa25.55■■□□□ 1.68
NIF3L1-205ENST00000409588 CHMP7Q8WUX9 453 aaPredicted RBP25.55■■□□□ 1.68
NIF3L1-205ENST00000409588 GAPVD1Q14C86 1478 aa25.52■■□□□ 1.68
NIF3L1-205ENST00000409588 SNAPC4Q5SXM2 1469 aa25.5■■□□□ 1.67
NIF3L1-205ENST00000409588 CHD1O14646 1710 aa25.49■■□□□ 1.67
NIF3L1-205ENST00000409588 TOP2BQ02880 1626 aa25.48■■□□□ 1.67
NIF3L1-205ENST00000409588 SYNJ2O15056 1496 aa25.45■■□□□ 1.66
NIF3L1-205ENST00000409588 BIVM-ERCC5R4GMW8 1640 aa25.45■■□□□ 1.66
NIF3L1-205ENST00000409588 ARHGEF11O15085 1522 aa25.44■■□□□ 1.66
NIF3L1-205ENST00000409588 RIMBP3CA6NJZ7 1639 aa25.44■■□□□ 1.66
NIF3L1-205ENST00000409588 RIMBP3BA6NNM3 1639 aa25.44■■□□□ 1.66
NIF3L1-205ENST00000409588 RIMBP3Q9UFD9 1639 aa25.44■■□□□ 1.66
NIF3L1-205ENST00000409588 ABCA5Q8WWZ7 1642 aa25.39■■□□□ 1.66
NIF3L1-205ENST00000409588 SYNJ1O43426 1573 aa25.37■■□□□ 1.65
NIF3L1-205ENST00000409588 PBRM1Q86U86 1689 aa25.35■■□□□ 1.65
NIF3L1-205ENST00000409588 CYB5RLQ6IPT4 315 aa25.32■■□□□ 1.64
NIF3L1-205ENST00000409588 CLASP1Q7Z460 1538 aa25.29■■□□□ 1.64
NIF3L1-205ENST00000409588 ERICH3Q5RHP9 1530 aa25.26■■□□□ 1.63
NIF3L1-205ENST00000409588 FHAD1B1AJZ9 1412 aa25.24■■□□□ 1.63
NIF3L1-205ENST00000409588 GRIN2AQ12879 1464 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms