RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 CHGAP10645 457 aaKnown RBP11.12□□□□□ -0.63
SNX13-201ENST00000409076 IL27Q8NEV9 243 aa11.12□□□□□ -0.63
SNX13-201ENST00000409076 CCDC7Q96M83 1385 aa11.11□□□□□ -0.63
SNX13-201ENST00000409076 HNRNPMP52272 730 aaKnown RBP eCLIP11.11□□□□□ -0.638e-7■■■■■ 42.1
SNX13-201ENST00000409076 CHMP7Q8WUX9 453 aaPredicted RBP11.11□□□□□ -0.63
SNX13-201ENST00000409076 NCOA2Q15596 1464 aa11.11□□□□□ -0.63
SNX13-201ENST00000409076 TIMELESSQ9UNS1 1208 aa11.11□□□□□ -0.63
SNX13-201ENST00000409076 SPRYD3Q8NCJ5 442 aa11.1□□□□□ -0.63
SNX13-201ENST00000409076 CCDC146Q8IYE0 955 aa11.1□□□□□ -0.63
SNX13-201ENST00000409076 CANXP27824 592 aaKnown RBP11.1□□□□□ -0.63
SNX13-201ENST00000409076 NUDCQ9Y266 331 aa11.1□□□□□ -0.63
SNX13-201ENST00000409076 UACAQ9BZF9 1416 aa11.09□□□□□ -0.63
SNX13-201ENST00000409076 NAIPQ13075 1403 aa11.09□□□□□ -0.63
SNX13-201ENST00000409076 TSPY4P0CV99 314 aa11.08□□□□□ -0.64
SNX13-201ENST00000409076 TSPY10P0CW01 314 aa11.08□□□□□ -0.64
SNX13-201ENST00000409076 ANO8Q9HCE9 1232 aaPredicted RBP11.08□□□□□ -0.64
SNX13-201ENST00000409076 ZBED9Q6R2W3 1325 aa11.06□□□□□ -0.64
SNX13-201ENST00000409076 CDK13Q14004 1512 aaKnown RBP11.06□□□□□ -0.64
SNX13-201ENST00000409076 RCAN3Q9UKA8 241 aa11.06□□□□□ -0.64
SNX13-201ENST00000409076 FANCIQ9NVI1 1328 aa11.06□□□□□ -0.64
SNX13-201ENST00000409076 CNTLNQ9NXG0 1405 aa11.06□□□□□ -0.64
SNX13-201ENST00000409076 NUP155O75694 1391 aa11.06□□□□□ -0.64
SNX13-201ENST00000409076 USP47Q96K76 1375 aa11.05□□□□□ -0.64
SNX13-201ENST00000409076 MYOM3Q5VTT5 1437 aa11.05□□□□□ -0.64
SNX13-201ENST00000409076 NBPF1Q3BBV0 1214 aa11.04□□□□□ -0.64
SNX13-201ENST00000409076 IPO9Q96P70 1041 aaKnown RBP11.04□□□□□ -0.64
SNX13-201ENST00000409076 CRBNQ96SW2 442 aa11.04□□□□□ -0.64
SNX13-201ENST00000409076 FRAT1Q92837 279 aaPredicted RBP11.03□□□□□ -0.64
SNX13-201ENST00000409076 NCAPD3P42695 1498 aa11.03□□□□□ -0.64
SNX13-201ENST00000409076 PRKCSHP14314 528 aaPredicted RBP11.02□□□□□ -0.64
SNX13-201ENST00000409076 WDR43Q15061 677 aaKnown RBP eCLIP11.02□□□□□ -0.64
SNX13-201ENST00000409076 CASKIN1Q8WXD9 1431 aa11.02□□□□□ -0.64
SNX13-201ENST00000409076 POLA1P09884 1462 aaPredicted RBP11.02□□□□□ -0.65
SNX13-201ENST00000409076 BIVM-ERCC5R4GMW8 1640 aa11.02□□□□□ -0.65
SNX13-201ENST00000409076 PDE4AP27815 886 aa11.01□□□□□ -0.65
SNX13-201ENST00000409076 PLEKHD1A6NEE1 506 aa11.01□□□□□ -0.65
SNX13-201ENST00000409076 C20orf194Q5TEA3 1177 aa11.01□□□□□ -0.65
SNX13-201ENST00000409076 BCL2L13Q9BXK5 485 aa11□□□□□ -0.65
SNX13-201ENST00000409076 HFM1A2PYH4 1435 aa11□□□□□ -0.65
SNX13-201ENST00000409076 NUTM2DQ5VT03 806 aaPredicted RBP11□□□□□ -0.65
SNX13-201ENST00000409076 SAFB2Q14151 953 aaKnown RBP eCLIP11□□□□□ -0.65
SNX13-201ENST00000409076 SLKQ9H2G2 1235 aaPredicted RBP11□□□□□ -0.65
SNX13-201ENST00000409076 RRP7AQ9Y3A4 280 aaKnown RBP11□□□□□ -0.65
SNX13-201ENST00000409076 RRP1P56182 461 aaKnown RBP10.99□□□□□ -0.65
SNX13-201ENST00000409076 ROCK2O75116 1388 aaKnown RBP10.99□□□□□ -0.65
SNX13-201ENST00000409076 PANK3Q9H999 370 aa10.99□□□□□ -0.65
SNX13-201ENST00000409076 PEG3Q9GZU2 1588 aa10.98□□□□□ -0.65
SNX13-201ENST00000409076 CLUAP1Q96AJ1 413 aa10.97□□□□□ -0.65
SNX13-201ENST00000409076 BRPF3Q9ULD4 1205 aa10.97□□□□□ -0.65
SNX13-201ENST00000409076 GAPVD1Q14C86 1478 aa10.97□□□□□ -0.65
SNX13-201ENST00000409076 PRDM2Q13029 1718 aa10.97□□□□□ -0.65
SNX13-201ENST00000409076 ARID4BQ4LE39 1312 aaPredicted RBP10.96□□□□□ -0.65
SNX13-201ENST00000409076 FYCO1Q9BQS8 1478 aa10.96□□□□□ -0.65
SNX13-201ENST00000409076 PNISRQ8TF01 805 aaKnown RBP10.96□□□□□ -0.65
SNX13-201ENST00000409076 PTPN23Q9H3S7 1636 aa10.96□□□□□ -0.66
SNX13-201ENST00000409076 PRG4Q92954 1404 aaPredicted RBP10.96□□□□□ -0.66
SNX13-201ENST00000409076 TOPBP1Q92547 1522 aa10.95□□□□□ -0.66
SNX13-201ENST00000409076 KDM6BO15054 1643 aa10.95□□□□□ -0.66
SNX13-201ENST00000409076 KNSTRNQ9Y448 316 aa10.94□□□□□ -0.66
SNX13-201ENST00000409076 GZF1Q9H116 711 aaPredicted RBP10.93□□□□□ -0.66
SNX13-201ENST00000409076 ADAMTS8Q9UP79 889 aa10.92□□□□□ -0.66
SNX13-201ENST00000409076 PLPPR3Q6T4P5 718 aa10.91□□□□□ -0.66
SNX13-201ENST00000409076 KTN1Q86UP2 1357 aaKnown RBP10.9□□□□□ -0.66
SNX13-201ENST00000409076 MYBBP1AQ9BQG0 1328 aaKnown RBP10.9□□□□□ -0.66
SNX13-201ENST00000409076 TPRNQ4KMQ1 711 aa10.9□□□□□ -0.67
SNX13-201ENST00000409076 CC2D2AQ9P2K1 1620 aa10.9□□□□□ -0.67
SNX13-201ENST00000409076 PPM1GO15355 546 aaPredicted RBP10.89□□□□□ -0.67
SNX13-201ENST00000409076 APAF1O14727 1248 aa10.89□□□□□ -0.67
SNX13-201ENST00000409076 ANKRD30BQ9BXX2 1392 aa10.89□□□□□ -0.67
SNX13-201ENST00000409076 NLRP13Q86W25 1043 aa10.88□□□□□ -0.67
SNX13-201ENST00000409076 NCOA1Q15788 1441 aa10.88□□□□□ -0.67
SNX13-201ENST00000409076 BCAR3O75815 825 aa10.88□□□□□ -0.67
SNX13-201ENST00000409076 PLEKHG5O94827 1062 aa10.88□□□□□ -0.67
SNX13-201ENST00000409076 COG6Q9Y2V7 657 aa10.88□□□□□ -0.67
SNX13-201ENST00000409076 THOC2Q8NI27 1593 aaKnown RBP10.87□□□□□ -0.67
SNX13-201ENST00000409076 JPH4Q96JJ6 628 aa10.87□□□□□ -0.67
SNX13-201ENST00000409076 MAGI3Q5TCQ9 1506 aa10.87□□□□□ -0.67
SNX13-201ENST00000409076 FOXD4L1Q9NU39 408 aa10.86□□□□□ -0.67
SNX13-201ENST00000409076 FRAT2O75474 233 aaPredicted RBP10.86□□□□□ -0.67
SNX13-201ENST00000409076 PANK1Q8TE04 598 aa10.86□□□□□ -0.67
SNX13-201ENST00000409076 KIF15Q9NS87 1388 aa10.86□□□□□ -0.67
SNX13-201ENST00000409076 ERICH6BQ5W0A0 696 aa10.85□□□□□ -0.67
SNX13-201ENST00000409076 DAPK1P53355 1430 aa10.85□□□□□ -0.67
SNX13-201ENST00000409076 HMGXB3Q12766 1538 aa10.85□□□□□ -0.67
SNX13-201ENST00000409076 ZBTB7CA1YPR0 619 aa10.85□□□□□ -0.67
SNX13-201ENST00000409076 TCERG1O14776 1098 aaKnown RBP10.85□□□□□ -0.67
SNX13-201ENST00000409076 TMF1P82094 1093 aa10.85□□□□□ -0.67
SNX13-201ENST00000409076 ANKRD30AQ9BXX3 1397 aa10.85□□□□□ -0.67
SNX13-201ENST00000409076 ABCC5O15440 1437 aa10.84□□□□□ -0.67
SNX13-201ENST00000409076 EPRSP07814 1512 aaKnown RBP10.84□□□□□ -0.67
SNX13-201ENST00000409076 URB2Q14146 1524 aaKnown RBP10.84□□□□□ -0.67
SNX13-201ENST00000409076 SLC24A1O60721 1099 aa10.83□□□□□ -0.68
SNX13-201ENST00000409076 NFKBIBQ15653 356 aa10.83□□□□□ -0.68
SNX13-201ENST00000409076 SUPT6HQ7KZ85 1726 aaKnown RBP10.83□□□□□ -0.68
SNX13-201ENST00000409076 SNAPC4Q5SXM2 1469 aa10.83□□□□□ -0.68
SNX13-201ENST00000409076 RALBP1Q15311 655 aa10.83□□□□□ -0.68
SNX13-201ENST00000409076 U2SURPO15042 1029 aaKnown RBP10.82□□□□□ -0.68
SNX13-201ENST00000409076 BACH2Q9BYV9 841 aa10.82□□□□□ -0.68
SNX13-201ENST00000409076 ANKRD50Q9ULJ7 1429 aa10.82□□□□□ -0.68
SNX13-201ENST00000409076 PLB1Q6P1J6 1458 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms