RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 KIAA2012Q0VF49 1180 aa22.46■■□□□ 1.19
SMPD4-202ENST00000409031 ABCC8Q09428 1581 aa22.45■■□□□ 1.18
SMPD4-202ENST00000409031 RWDD1Q9H446 243 aaPredicted RBP22.44■■□□□ 1.18
SMPD4-202ENST00000409031 ZRSR1Q15695 479 aaKnown RBP22.43■■□□□ 1.18
SMPD4-202ENST00000409031 CENPQQ7L2Z9 268 aaPredicted RBP22.43■■□□□ 1.18
SMPD4-202ENST00000409031 RRP1P56182 461 aaKnown RBP22.42■■□□□ 1.18
SMPD4-202ENST00000409031 NLRP13Q86W25 1043 aa22.42■■□□□ 1.18
SMPD4-202ENST00000409031 SLC4A3P48751 1232 aa22.41■■□□□ 1.18
SMPD4-202ENST00000409031 PMFBP1Q8TBY8 1022 aa22.4■■□□□ 1.18
SMPD4-202ENST00000409031 MAPK8IP3Q9UPT6 1336 aa22.4■■□□□ 1.18
SMPD4-202ENST00000409031 DDX11L8A8MPP1 907 aa22.4■■□□□ 1.18
SMPD4-202ENST00000409031 EXOC6Q8TAG9 804 aa22.4■■□□□ 1.18
SMPD4-202ENST00000409031 DCAF11Q8TEB1 546 aa22.39■■□□□ 1.17
SMPD4-202ENST00000409031 ROCK2O75116 1388 aaKnown RBP22.39■■□□□ 1.17
SMPD4-202ENST00000409031 FMN1Q68DA7 1419 aa22.38■■□□□ 1.17
SMPD4-202ENST00000409031 NRDCO43847 1150 aa22.38■■□□□ 1.17
SMPD4-202ENST00000409031 IL27Q8NEV9 243 aa22.38■■□□□ 1.17
SMPD4-202ENST00000409031 MPHOSPH9Q99550 1183 aa22.38■■□□□ 1.17
SMPD4-202ENST00000409031 L3MBTL2Q969R5 705 aa22.37■■□□□ 1.17
SMPD4-202ENST00000409031 GOLGA6L6A8MZA4 724 aa22.37■■□□□ 1.17
SMPD4-202ENST00000409031 NFKBIBQ15653 356 aa22.37■■□□□ 1.17
SMPD4-202ENST00000409031 TPRNQ4KMQ1 711 aa22.36■■□□□ 1.17
SMPD4-202ENST00000409031 ARID3AQ99856 593 aa22.36■■□□□ 1.17
SMPD4-202ENST00000409031 GOLGA2Q08379 1002 aa22.34■■□□□ 1.17
SMPD4-202ENST00000409031 BAZ1BQ9UIG0 1483 aaKnown RBP22.33■■□□□ 1.17
SMPD4-202ENST00000409031 CALD1Q05682 793 aaKnown RBP22.33■■□□□ 1.17
SMPD4-202ENST00000409031 MROH2BQ7Z745 1585 aa22.33■■□□□ 1.17
SMPD4-202ENST00000409031 PLEKHD1A6NEE1 506 aa22.33■■□□□ 1.17
SMPD4-202ENST00000409031 CARMIL1Q5VZK9 1371 aa22.33■■□□□ 1.16
SMPD4-202ENST00000409031 PHLDB1Q86UU1 1377 aa22.33■■□□□ 1.16
SMPD4-202ENST00000409031 PAK3O75914 559 aaPredicted RBP22.31■■□□□ 1.16
SMPD4-202ENST00000409031 PKNOX2Q96KN3 472 aa22.31■■□□□ 1.16
SMPD4-202ENST00000409031 SYAP1Q96A49 352 aaPredicted RBP22.31■■□□□ 1.16
SMPD4-202ENST00000409031 MFAP1P55081 439 aaKnown RBP22.29■■□□□ 1.16
SMPD4-202ENST00000409031 SKOR2Q2VWA4 1001 aaPredicted RBP22.29■■□□□ 1.16
SMPD4-202ENST00000409031 STAG3Q9UJ98 1225 aa22.28■■□□□ 1.16
SMPD4-202ENST00000409031 FOXD1Q16676 465 aa22.28■■□□□ 1.16
SMPD4-202ENST00000409031 MYBBP1AQ9BQG0 1328 aaKnown RBP22.27■■□□□ 1.16
SMPD4-202ENST00000409031 BRPF3Q9ULD4 1205 aa22.27■■□□□ 1.16
SMPD4-202ENST00000409031 KIF15Q9NS87 1388 aa22.27■■□□□ 1.15
SMPD4-202ENST00000409031 FAM43AQ8N2R8 423 aa22.26■■□□□ 1.15
SMPD4-202ENST00000409031 GOLGA6L4A6NEF3 574 aa22.26■■□□□ 1.15
SMPD4-202ENST00000409031 MCCP23508 829 aa22.26■■□□□ 1.15
SMPD4-202ENST00000409031 MSH5O43196 834 aa22.25■■□□□ 1.15
SMPD4-202ENST00000409031 IPO8O15397 1037 aaKnown RBP22.25■■□□□ 1.15
SMPD4-202ENST00000409031 AMER1Q5JTC6 1135 aaPredicted RBP22.24■■□□□ 1.15
SMPD4-202ENST00000409031 CRBNQ96SW2 442 aa22.23■■□□□ 1.15
SMPD4-202ENST00000409031 PKD2Q13563 968 aa22.23■■□□□ 1.15
SMPD4-202ENST00000409031 DRC7Q8IY82 874 aa22.22■■□□□ 1.15
SMPD4-202ENST00000409031 PLIN1O60240 522 aa22.19■■□□□ 1.14
SMPD4-202ENST00000409031 RAPGEF2Q9Y4G8 1499 aa22.18■■□□□ 1.14
SMPD4-202ENST00000409031 CHMP5Q9NZZ3 219 aa22.18■■□□□ 1.14
SMPD4-202ENST00000409031 ZBTB7CA1YPR0 619 aa22.17■■□□□ 1.14
SMPD4-202ENST00000409031 U2SURPO15042 1029 aaKnown RBP22.17■■□□□ 1.14
SMPD4-202ENST00000409031 CENPJQ9HC77 1338 aaPredicted RBP22.17■■□□□ 1.14
SMPD4-202ENST00000409031 TNNT3P45378 269 aaPredicted RBP22.17■■□□□ 1.14
SMPD4-202ENST00000409031 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.17■■□□□ 1.14
SMPD4-202ENST00000409031 CUX2O14529 1486 aa22.16■■□□□ 1.14
SMPD4-202ENST00000409031 DDX49Q9Y6V7 483 aaKnown RBP22.16■■□□□ 1.14
SMPD4-202ENST00000409031 MAP7D2Q96T17 732 aa22.16■■□□□ 1.14
SMPD4-202ENST00000409031 CGNL1Q0VF96 1302 aa22.15■■□□□ 1.14
SMPD4-202ENST00000409031 MRE11P49959 708 aa22.14■■□□□ 1.14
SMPD4-202ENST00000409031 MORC1Q86VD1 984 aa22.14■■□□□ 1.14
SMPD4-202ENST00000409031 ITPRIPQ8IWB1 547 aa22.13■■□□□ 1.13
SMPD4-202ENST00000409031 FAM13BQ9NYF5 915 aa22.12■■□□□ 1.13
SMPD4-202ENST00000409031 CSPP1Q1MSJ5 1256 aa22.11■■□□□ 1.13
SMPD4-202ENST00000409031 PHF14O94880 888 aa22.11■■□□□ 1.13
SMPD4-202ENST00000409031 HAP1P54257 671 aaPredicted RBP22.1■■□□□ 1.13
SMPD4-202ENST00000409031 MTERF4Q7Z6M4 381 aaKnown RBP22.1■■□□□ 1.13
SMPD4-202ENST00000409031 CNTLNQ9NXG0 1405 aa22.1■■□□□ 1.13
SMPD4-202ENST00000409031 TPM2P07951 284 aa22.09■■□□□ 1.13
SMPD4-202ENST00000409031 RUSC2Q8N2Y8 1516 aa22.09■■□□□ 1.13
SMPD4-202ENST00000409031 BACH2Q9BYV9 841 aa22.08■■□□□ 1.12
SMPD4-202ENST00000409031 CCDC7Q96M83 1385 aa22.08■■□□□ 1.12
SMPD4-202ENST00000409031 CHMP7Q8WUX9 453 aaPredicted RBP22.07■■□□□ 1.12
SMPD4-202ENST00000409031 FRAT2O75474 233 aaPredicted RBP22.06■■□□□ 1.12
SMPD4-202ENST00000409031 KCNJ4P48050 445 aa22.06■■□□□ 1.12
SMPD4-202ENST00000409031 CLUAP1Q96AJ1 413 aa22.06■■□□□ 1.12
SMPD4-202ENST00000409031 FOXD4L1Q9NU39 408 aa22.05■■□□□ 1.12
SMPD4-202ENST00000409031 TOP2AP11388 1531 aaKnown RBP22.03■■□□□ 1.12
SMPD4-202ENST00000409031 RRP9O43818 475 aaKnown RBP22.03■■□□□ 1.12
SMPD4-202ENST00000409031 ST18O60284 1047 aa22.03■■□□□ 1.12
SMPD4-202ENST00000409031 SMC4Q9NTJ3 1288 aa22.02■■□□□ 1.12
SMPD4-202ENST00000409031 CCDC18Q5T9S5 1454 aa22.02■■□□□ 1.12
SMPD4-202ENST00000409031 E9PSI1 815 aa22.02■■□□□ 1.11
SMPD4-202ENST00000409031 FGD1P98174 961 aa22.02■■□□□ 1.11
SMPD4-202ENST00000409031 ST20-MTHFSA0A0A6YYL1 179 aa22.01■■□□□ 1.11
SMPD4-202ENST00000409031 ESF1Q9H501 851 aaKnown RBP22.01■■□□□ 1.11
SMPD4-202ENST00000409031 WASHC2AQ641Q2 1341 aa22■■□□□ 1.11
SMPD4-202ENST00000409031 NUP155O75694 1391 aa21.99■■□□□ 1.11
SMPD4-202ENST00000409031 U2AF1L5P0DN76 240 aaPredicted RBP21.99■■□□□ 1.11
SMPD4-202ENST00000409031 U2AF1Q01081 240 aaKnown RBP eCLIP21.99■■□□□ 1.11
SMPD4-202ENST00000409031 UBE2Q2Q8WVN8 375 aa21.99■■□□□ 1.11
SMPD4-202ENST00000409031 USP47Q96K76 1375 aa21.99■■□□□ 1.11
SMPD4-202ENST00000409031 WIZO95785 1651 aa21.99■■□□□ 1.11
SMPD4-202ENST00000409031 CCDC146Q8IYE0 955 aa21.98■■□□□ 1.11
SMPD4-202ENST00000409031 KIF7Q2M1P5 1343 aa21.98■■□□□ 1.11
SMPD4-202ENST00000409031 NGEFQ8N5V2 710 aa21.97■■□□□ 1.11
SMPD4-202ENST00000409031 ISY1Q9ULR0 285 aaKnown RBP21.97■■□□□ 1.11
SMPD4-202ENST00000409031 HTATSF1O43719 755 aaKnown RBP21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms