RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
SMPD4-202ENST00000409031 SUPT5HO00267 1087 aaKnown RBP28.68■■■□□ 2.18
SMPD4-202ENST00000409031 DCAF8L2P0C7V8 631 aa28.64■■■□□ 2.18
SMPD4-202ENST00000409031 PELP1Q8IZL8 1130 aaKnown RBP28.51■■■□□ 2.15
SMPD4-202ENST00000409031 MYT1Q01538 1121 aa28.11■■■□□ 2.09
SMPD4-202ENST00000409031 PCGF6Q9BYE7 350 aa28.01■■■□□ 2.07
SMPD4-202ENST00000409031 SHROOM4Q9ULL8 1493 aa27.91■■■□□ 2.06
SMPD4-202ENST00000409031 ZEB1P37275 1124 aaPredicted RBP27.72■■■□□ 2.03
SMPD4-202ENST00000409031 CENPBP07199 599 aaPredicted RBP27.65■■■□□ 2.02
SMPD4-202ENST00000409031 HRCP23327 699 aa27.48■■□□□ 1.99
SMPD4-202ENST00000409031 EHMT2Q96KQ7 1210 aa27.24■■□□□ 1.95
SMPD4-202ENST00000409031 CCER1Q8TC90 406 aaPredicted RBP26.98■■□□□ 1.91
SMPD4-202ENST00000409031 FAM9AQ8IZU1 332 aaPredicted RBP26.88■■□□□ 1.89
SMPD4-202ENST00000409031 TRIM26Q12899 539 aaPredicted RBP26.88■■□□□ 1.89
SMPD4-202ENST00000409031 ERICH6Q7L0X2 663 aa26.86■■□□□ 1.89
SMPD4-202ENST00000409031 APLP2Q06481 763 aa26.85■■□□□ 1.89
SMPD4-202ENST00000409031 PPARGC1BQ86YN6 1023 aaKnown RBP26.65■■□□□ 1.86
SMPD4-202ENST00000409031 YTHDC1Q96MU7 727 aaKnown RBP26.6■■□□□ 1.85
SMPD4-202ENST00000409031 TRIM41Q8WV44 630 aa26.58■■□□□ 1.85
SMPD4-202ENST00000409031 TTBK1Q5TCY1 1321 aaPredicted RBP26.57■■□□□ 1.84
SMPD4-202ENST00000409031 NEFLP07196 543 aa26.45■■□□□ 1.82
SMPD4-202ENST00000409031 CHIC1Q5VXU3 224 aa26.38■■□□□ 1.81
SMPD4-202ENST00000409031 LOC105371045A0A1W2PR82 267 aa26.16■■□□□ 1.78
SMPD4-202ENST00000409031 DIEXFQ68CQ4 756 aaKnown RBP26.08■■□□□ 1.77
SMPD4-202ENST00000409031 GTF3C3Q9Y5Q9 886 aa26.03■■□□□ 1.76
SMPD4-202ENST00000409031 UBTFP17480 764 aaKnown RBP25.96■■□□□ 1.75
SMPD4-202ENST00000409031 ACIN1Q9UKV3 1341 aaKnown RBP25.87■■□□□ 1.73
SMPD4-202ENST00000409031 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.77■■□□□ 1.72
SMPD4-202ENST00000409031 RANGAP1P46060 587 aaPredicted RBP25.72■■□□□ 1.71
SMPD4-202ENST00000409031 HNRNPUL2Q1KMD3 747 aaKnown RBP25.48■■□□□ 1.67
SMPD4-202ENST00000409031 RTL5Q5HYW3 569 aaPredicted RBP25.44■■□□□ 1.66
SMPD4-202ENST00000409031 SCAF1Q9H7N4 1312 aaKnown RBP25.44■■□□□ 1.66
SMPD4-202ENST00000409031 ZNF316A6NFI3 1004 aaPredicted RBP25.41■■□□□ 1.66
SMPD4-202ENST00000409031 DAXXQ9UER7 740 aaPredicted RBP25.38■■□□□ 1.65
SMPD4-202ENST00000409031 ATP1B4Q9UN42 357 aaPredicted RBP25.31■■□□□ 1.64
SMPD4-202ENST00000409031 CLSPNQ9HAW4 1339 aa25.3■■□□□ 1.64
SMPD4-202ENST00000409031 DCAF1Q9Y4B6 1507 aa25.29■■□□□ 1.64
SMPD4-202ENST00000409031 NEUROD1Q13562 356 aa25.25■■□□□ 1.63
SMPD4-202ENST00000409031 BCANQ96GW7 911 aa25.2■■□□□ 1.62
SMPD4-202ENST00000409031 CDK11AQ9UQ88 783 aaPredicted RBP25.13■■□□□ 1.61
SMPD4-202ENST00000409031 ITGAEP38570 1179 aa25.12■■□□□ 1.61
SMPD4-202ENST00000409031 MYT1LQ9UL68 1186 aa24.92■■□□□ 1.58
SMPD4-202ENST00000409031 ANP32CO43423 234 aa24.88■■□□□ 1.57
SMPD4-202ENST00000409031 POLR3GLQ9BT43 218 aa24.78■■□□□ 1.56
SMPD4-202ENST00000409031 FKBP8Q14318 412 aa24.72■■□□□ 1.55
SMPD4-202ENST00000409031 ANP32EQ9BTT0 268 aa24.68■■□□□ 1.54
SMPD4-202ENST00000409031 ANP32AP39687 249 aaKnown RBP24.67■■□□□ 1.54
SMPD4-202ENST00000409031 CNGB1Q14028 1251 aaPredicted RBP24.61■■□□□ 1.53
SMPD4-202ENST00000409031 MIER1Q8N108 512 aa24.57■■□□□ 1.52
SMPD4-202ENST00000409031 MYO15BQ96JP2 1530 aa24.53■■□□□ 1.52
SMPD4-202ENST00000409031 FAM50AQ14320 339 aaKnown RBP24.49■■□□□ 1.51
SMPD4-202ENST00000409031 CCDC180Q9P1Z9 1646 aa24.48■■□□□ 1.51
SMPD4-202ENST00000409031 EIF5BO60841 1220 aaKnown RBP24.48■■□□□ 1.51
SMPD4-202ENST00000409031 CSRNP3Q8WYN3 585 aa24.37■■□□□ 1.49
SMPD4-202ENST00000409031 GLIPR1L2Q4G1C9 344 aa24.34■■□□□ 1.49
SMPD4-202ENST00000409031 BCL11AQ9H165 835 aa24.33■■□□□ 1.49
SMPD4-202ENST00000409031 HNRNPUQ00839 825 aaKnown RBP eCLIP24.26■■□□□ 1.47
SMPD4-202ENST00000409031 ZBTB47Q9UFB7 747 aaPredicted RBP24.26■■□□□ 1.47
SMPD4-202ENST00000409031 NBR1Q14596 966 aa24.26■■□□□ 1.47
SMPD4-202ENST00000409031 DDX10Q13206 875 aaKnown RBP24.25■■□□□ 1.47
SMPD4-202ENST00000409031 NPM2Q86SE8 214 aaKnown RBP24.24■■□□□ 1.47
SMPD4-202ENST00000409031 TRIM52Q96A61 297 aa24.24■■□□□ 1.47
SMPD4-202ENST00000409031 ABCC9O60706 1549 aa24.17■■□□□ 1.46
SMPD4-202ENST00000409031 SUPT16HQ9Y5B9 1047 aaKnown RBP24.13■■□□□ 1.45
SMPD4-202ENST00000409031 CCDC136Q96JN2 1154 aa24.07■■□□□ 1.44
SMPD4-202ENST00000409031 ZCCHC6Q5VYS8 1495 aaKnown RBP24.04■■□□□ 1.44
SMPD4-202ENST00000409031 TONSLQ96HA7 1378 aa24■■□□□ 1.43
SMPD4-202ENST00000409031 FAM9BQ8IZU0 186 aa23.95■■□□□ 1.42
SMPD4-202ENST00000409031 ZNF326Q5BKZ1 582 aaKnown RBP23.92■■□□□ 1.42
SMPD4-202ENST00000409031 IRX6P78412 446 aaPredicted RBP23.9■■□□□ 1.42
SMPD4-202ENST00000409031 ANP32BQ92688 251 aaKnown RBP23.87■■□□□ 1.41
SMPD4-202ENST00000409031 CANXP27824 592 aaKnown RBP23.84■■□□□ 1.41
SMPD4-202ENST00000409031 RBM19Q9Y4C8 960 aaKnown RBP23.81■■□□□ 1.4
SMPD4-202ENST00000409031 MRS2Q9HD23 443 aa23.8■■□□□ 1.4
SMPD4-202ENST00000409031 SLC4A1APQ9BWU0 796 aaKnown RBP23.79■■□□□ 1.4
SMPD4-202ENST00000409031 UPF2Q9HAU5 1272 aaKnown RBP23.78■■□□□ 1.4
SMPD4-202ENST00000409031 TSHZ2Q9NRE2 1034 aa23.77■■□□□ 1.4
SMPD4-202ENST00000409031 NOP58Q9Y2X3 529 aaKnown RBP23.76■■□□□ 1.39
SMPD4-202ENST00000409031 DDRGK1Q96HY6 314 aa23.75■■□□□ 1.39
SMPD4-202ENST00000409031 PPM1GO15355 546 aaPredicted RBP23.75■■□□□ 1.39
SMPD4-202ENST00000409031 DEKP35659 375 aaKnown RBP23.74■■□□□ 1.39
SMPD4-202ENST00000409031 PPP4R2Q9NY27 417 aa23.74■■□□□ 1.39
SMPD4-202ENST00000409031 CEP162Q5TB80 1403 aa23.71■■□□□ 1.39
SMPD4-202ENST00000409031 NEFMP07197 916 aa23.69■■□□□ 1.38
SMPD4-202ENST00000409031 ERICH6BQ5W0A0 696 aa23.68■■□□□ 1.38
SMPD4-202ENST00000409031 TMC1Q8TDI8 760 aa23.68■■□□□ 1.38
SMPD4-202ENST00000409031 PABPN1Q86U42 306 aaKnown RBP eCLIP23.65■■□□□ 1.382e-6■■□□□ 12.8
SMPD4-202ENST00000409031 CLIP1P30622 1438 aa23.65■■□□□ 1.38
SMPD4-202ENST00000409031 HIRIP3Q9BW71 556 aaPredicted RBP23.61■■□□□ 1.37
SMPD4-202ENST00000409031 EEA1Q15075 1411 aa23.61■■□□□ 1.37
SMPD4-202ENST00000409031 RTN4Q9NQC3 1192 aaKnown RBP23.6■■□□□ 1.37
SMPD4-202ENST00000409031 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.6■■□□□ 1.37
SMPD4-202ENST00000409031 HSP90AA1P07900 732 aaKnown RBP23.59■■□□□ 1.37
SMPD4-202ENST00000409031 P3H3Q8IVL6 736 aa23.56■■□□□ 1.36
SMPD4-202ENST00000409031 TNIKQ9UKE5 1360 aa23.56■■□□□ 1.36
SMPD4-202ENST00000409031 EIF4G2P78344 907 aaKnown RBP eCLIP23.54■■□□□ 1.36
SMPD4-202ENST00000409031 SALL2Q9Y467 1007 aaPredicted RBP23.52■■□□□ 1.36
SMPD4-202ENST00000409031 ARXQ96QS3 562 aa23.51■■□□□ 1.35
SMPD4-202ENST00000409031 CCER2I3L3R5 266 aa23.49■■□□□ 1.35
SMPD4-202ENST00000409031 GOLGA3Q08378 1498 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms