RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 SLC39A7Q92504 469 aa11.53□□□□□ -0.56
HMGB3P19-201ENST00000403971 E2F4Q16254 413 aa11.52□□□□□ -0.57
HMGB3P19-201ENST00000403971 DDX27Q96GQ7 796 aaKnown RBP11.52□□□□□ -0.57
HMGB3P19-201ENST00000403971 TMEM121BQ9BXQ6 578 aaPredicted RBP11.51□□□□□ -0.57
HMGB3P19-201ENST00000403971 METRNQ9UJH8 293 aa11.51□□□□□ -0.57
HMGB3P19-201ENST00000403971 C7P10643 843 aa11.5□□□□□ -0.57
HMGB3P19-201ENST00000403971 PRKCSHP14314 528 aaPredicted RBP11.5□□□□□ -0.57
HMGB3P19-201ENST00000403971 GPHNQ9NQX3 736 aaPredicted RBP11.49□□□□□ -0.57
HMGB3P19-201ENST00000403971 G3V3G9 751 aa11.48□□□□□ -0.57
HMGB3P19-201ENST00000403971 PPP1R15BQ5SWA1 713 aa11.46□□□□□ -0.57
HMGB3P19-201ENST00000403971 L3MBTL3Q96JM7 780 aaPredicted RBP11.46□□□□□ -0.57
HMGB3P19-201ENST00000403971 DSG2Q14126 1118 aa11.45□□□□□ -0.58
HMGB3P19-201ENST00000403971 TMC2Q8TDI7 906 aa11.45□□□□□ -0.58
HMGB3P19-201ENST00000403971 C2orf72A6NCS6 295 aa11.43□□□□□ -0.58
HMGB3P19-201ENST00000403971 TPRNQ4KMQ1 711 aa11.43□□□□□ -0.58
HMGB3P19-201ENST00000403971 TMEM92Q6UXU6 159 aa11.43□□□□□ -0.58
HMGB3P19-201ENST00000403971 ARHGEF1Q92888 912 aaKnown RBP11.43□□□□□ -0.58
HMGB3P19-201ENST00000403971 CAMK2BQ13554 666 aa11.42□□□□□ -0.58
HMGB3P19-201ENST00000403971 KIF3CO14782 793 aa11.4□□□□□ -0.58
HMGB3P19-201ENST00000403971 FOXK1P85037 733 aa11.39□□□□□ -0.59
HMGB3P19-201ENST00000403971 PLPP6Q8IY26 295 aa11.37□□□□□ -0.59
HMGB3P19-201ENST00000403971 EMILIN3Q9NT22 766 aa11.37□□□□□ -0.59
HMGB3P19-201ENST00000403971 SEMA3EO15041 775 aa11.36□□□□□ -0.59
HMGB3P19-201ENST00000403971 C3orf67Q6ZVT6 689 aa11.33□□□□□ -0.6
HMGB3P19-201ENST00000403971 ARIH1Q9Y4X5 557 aaPredicted RBP11.33□□□□□ -0.6
HMGB3P19-201ENST00000403971 DPYSL4O14531 572 aa11.32□□□□□ -0.6
HMGB3P19-201ENST00000403971 TESPA1A2RU30 521 aaPredicted RBP11.29□□□□□ -0.6
HMGB3P19-201ENST00000403971 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.28□□□□□ -0.6
HMGB3P19-201ENST00000403971 POTEJP0CG39 1038 aa11.27□□□□□ -0.61
HMGB3P19-201ENST00000403971 LMOD2Q6P5Q4 547 aa11.27□□□□□ -0.61
HMGB3P19-201ENST00000403971 UPF1Q92900 1129 aaKnown RBP eCLIP11.27□□□□□ -0.61
HMGB3P19-201ENST00000403971 POTEB2H3BUK9 544 aa11.26□□□□□ -0.61
HMGB3P19-201ENST00000403971 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.25□□□□□ -0.61
HMGB3P19-201ENST00000403971 MLLT3P42568 568 aaPredicted RBP11.24□□□□□ -0.61
HMGB3P19-201ENST00000403971 MAP3K9P80192 1104 aa11.21□□□□□ -0.61
HMGB3P19-201ENST00000403971 PDIA6Q15084 440 aa11.21□□□□□ -0.61
HMGB3P19-201ENST00000403971 TULP1O00294 542 aaPredicted RBP11.2□□□□□ -0.62
HMGB3P19-201ENST00000403971 OXER1Q8TDS5 423 aa11.2□□□□□ -0.62
HMGB3P19-201ENST00000403971 SPDYE16A6NNV3 312 aaPredicted RBP11.18□□□□□ -0.62
HMGB3P19-201ENST00000403971 SMYD5Q6GMV2 418 aa11.16□□□□□ -0.62
HMGB3P19-201ENST00000403971 RBM26Q5T8P6 1007 aaKnown RBP11.14□□□□□ -0.63
HMGB3P19-201ENST00000403971 PTCD2Q8WV60 388 aaKnown RBP11.13□□□□□ -0.63
HMGB3P19-201ENST00000403971 GRXCR2A6NFK2 248 aa11.12□□□□□ -0.63
HMGB3P19-201ENST00000403971 ZC3H15Q8WU90 426 aaKnown RBP11.12□□□□□ -0.63
HMGB3P19-201ENST00000403971 EVI5O60447 810 aa11.11□□□□□ -0.63
HMGB3P19-201ENST00000403971 SLC34A2O95436 690 aa11.11□□□□□ -0.63
HMGB3P19-201ENST00000403971 SLAIN1Q8ND83 568 aa11.11□□□□□ -0.63
HMGB3P19-201ENST00000403971 TBC1D12O60347 775 aa11.09□□□□□ -0.63
HMGB3P19-201ENST00000403971 DDX12PQ92771 950 aa11.09□□□□□ -0.63
HMGB3P19-201ENST00000403971 SCUBE2Q9NQ36 999 aa11.08□□□□□ -0.64
HMGB3P19-201ENST00000403971 PCDHGA4Q9Y5G9 962 aa11.07□□□□□ -0.64
HMGB3P19-201ENST00000403971 MAMSTRQ6ZN01 415 aa11.05□□□□□ -0.64
HMGB3P19-201ENST00000403971 HOXB3P14651 431 aaPredicted RBP11.04□□□□□ -0.64
HMGB3P19-201ENST00000403971 PTGER2P43116 358 aa11.04□□□□□ -0.64
HMGB3P19-201ENST00000403971 GPIHBP1Q8IV16 184 aa11.04□□□□□ -0.64
HMGB3P19-201ENST00000403971 OSBPP22059 807 aa11.03□□□□□ -0.64
HMGB3P19-201ENST00000403971 PRIM1P49642 420 aaKnown RBP11.02□□□□□ -0.65
HMGB3P19-201ENST00000403971 KHSRPQ92945 711 aaKnown RBP eCLIP11.02□□□□□ -0.65
HMGB3P19-201ENST00000403971 ANO8Q9HCE9 1232 aaPredicted RBP11.02□□□□□ -0.65
HMGB3P19-201ENST00000403971 ZNF316A6NFI3 1004 aaPredicted RBP11.01□□□□□ -0.65
HMGB3P19-201ENST00000403971 ZMYND10O75800 440 aa11□□□□□ -0.65
HMGB3P19-201ENST00000403971 KDM4FA0A1W2PPD8 638 aa10.99□□□□□ -0.65
HMGB3P19-201ENST00000403971 DOK7Q18PE1 504 aa10.99□□□□□ -0.65
HMGB3P19-201ENST00000403971 ARSIQ5FYB1 569 aa10.99□□□□□ -0.65
HMGB3P19-201ENST00000403971 SLC24A3Q9HC58 644 aa10.99□□□□□ -0.65
HMGB3P19-201ENST00000403971 OTUD5Q96G74 571 aa10.98□□□□□ -0.65
HMGB3P19-201ENST00000403971 NUTM2FA1L443 756 aa10.97□□□□□ -0.65
HMGB3P19-201ENST00000403971 NUDT7P0C024 238 aa10.97□□□□□ -0.65
HMGB3P19-201ENST00000403971 GPR37O15354 613 aa10.96□□□□□ -0.65
HMGB3P19-201ENST00000403971 GPR153Q6NV75 609 aa10.95□□□□□ -0.66
HMGB3P19-201ENST00000403971 BARGINQ6ZT62 677 aa10.95□□□□□ -0.66
HMGB3P19-201ENST00000403971 PCDHGA10Q9Y5H3 936 aa10.94□□□□□ -0.66
HMGB3P19-201ENST00000403971 RIMBP2O15034 1052 aa10.93□□□□□ -0.66
HMGB3P19-201ENST00000403971 PHF14O94880 888 aa10.93□□□□□ -0.66
HMGB3P19-201ENST00000403971 ZNF710Q8N1W2 664 aa10.93□□□□□ -0.66
HMGB3P19-201ENST00000403971 RBM33Q96EV2 1170 aaKnown RBP10.93□□□□□ -0.66
HMGB3P19-201ENST00000403971 LHX8Q68G74 356 aa10.92□□□□□ -0.66
HMGB3P19-201ENST00000403971 EN1Q05925 392 aaPredicted RBP10.9□□□□□ -0.66
HMGB3P19-201ENST00000403971 EPAS1Q99814 870 aa10.9□□□□□ -0.66
HMGB3P19-201ENST00000403971 CDHR5Q9HBB8 845 aa10.9□□□□□ -0.66
HMGB3P19-201ENST00000403971 ZSWIM6Q9HCJ5 1215 aa10.9□□□□□ -0.66
HMGB3P19-201ENST00000403971 MAP3K7O43318 606 aa10.89□□□□□ -0.67
HMGB3P19-201ENST00000403971 KRI1Q8N9T8 703 aaKnown RBP10.89□□□□□ -0.67
HMGB3P19-201ENST00000403971 JPH4Q96JJ6 628 aa10.89□□□□□ -0.67
HMGB3P19-201ENST00000403971 FOSBP53539 338 aa10.88□□□□□ -0.67
HMGB3P19-201ENST00000403971 TSR1Q2NL82 804 aaKnown RBP10.88□□□□□ -0.67
HMGB3P19-201ENST00000403971 TYW1BQ6NUM6 668 aa10.88□□□□□ -0.67
HMGB3P19-201ENST00000403971 ZNF454Q8N9F8 522 aa10.88□□□□□ -0.67
HMGB3P19-201ENST00000403971 FECHP22830 423 aa10.87□□□□□ -0.67
HMGB3P19-201ENST00000403971 LHX6Q9UPM6 363 aa10.87□□□□□ -0.67
HMGB3P19-201ENST00000403971 SNPHO15079 494 aa10.86□□□□□ -0.67
HMGB3P19-201ENST00000403971 FCHSD2O94868 740 aa10.86□□□□□ -0.67
HMGB3P19-201ENST00000403971 PTGDRQ13258 359 aa10.86□□□□□ -0.67
HMGB3P19-201ENST00000403971 GNPATO15228 680 aa10.84□□□□□ -0.67
HMGB3P19-201ENST00000403971 BRPF1P55201 1214 aaPredicted RBP10.84□□□□□ -0.67
HMGB3P19-201ENST00000403971 NPDC1Q9NQX5 325 aaPredicted RBP10.84□□□□□ -0.67
HMGB3P19-201ENST00000403971 HOXB1P14653 301 aaPredicted RBP10.83□□□□□ -0.68
HMGB3P19-201ENST00000403971 HIC1Q14526 733 aa10.83□□□□□ -0.68
HMGB3P19-201ENST00000403971 FBXW7Q969H0 707 aa10.83□□□□□ -0.68
HMGB3P19-201ENST00000403971 ZDHHC16Q969W1 377 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms