RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 CFDP1Q9UEE9 299 aaPredicted RBP24.68■■□□□ 1.54
HMGA1-204ENST00000401473 PREX2Q70Z35 1606 aa24.67■■□□□ 1.54
HMGA1-204ENST00000401473 EFCAB2Q5VUJ9 269 aa24.67■■□□□ 1.54
HMGA1-204ENST00000401473 NEO1Q92859 1461 aa24.66■■□□□ 1.54
HMGA1-204ENST00000401473 ARAP3Q8WWN8 1544 aa24.66■■□□□ 1.54
HMGA1-204ENST00000401473 ARHGAP5Q13017 1502 aa24.66■■□□□ 1.54
HMGA1-204ENST00000401473 ZNF777Q9ULD5 760 aaPredicted RBP24.64■■□□□ 1.54
HMGA1-204ENST00000401473 ZNF644Q9H582 1327 aaPredicted RBP24.64■■□□□ 1.54
HMGA1-204ENST00000401473 MYOM3Q5VTT5 1437 aa24.64■■□□□ 1.54
HMGA1-204ENST00000401473 AKNAQ7Z591 1439 aa24.64■■□□□ 1.54
HMGA1-204ENST00000401473 ITSN2Q9NZM3 1697 aa24.6■■□□□ 1.53
HMGA1-204ENST00000401473 KDM6BO15054 1643 aa24.6■■□□□ 1.53
HMGA1-204ENST00000401473 RAPGEF3O95398 923 aa24.59■■□□□ 1.53
HMGA1-204ENST00000401473 MIA2Q96PC5 1412 aa24.57■■□□□ 1.52
HMGA1-204ENST00000401473 ADGRL1O94910 1474 aa24.56■■□□□ 1.52
HMGA1-204ENST00000401473 CFAP74Q9C0B2 1584 aa24.56■■□□□ 1.52
HMGA1-204ENST00000401473 SAMD9LQ8IVG5 1584 aa24.56■■□□□ 1.52
HMGA1-204ENST00000401473 FGD6Q6ZV73 1430 aa24.56■■□□□ 1.52
HMGA1-204ENST00000401473 SCAPERQ9BY12 1400 aa24.56■■□□□ 1.52
HMGA1-204ENST00000401473 HNRNPMP52272 730 aaKnown RBP eCLIP24.54■■□□□ 1.52
HMGA1-204ENST00000401473 ARHGEF12Q9NZN5 1544 aa24.54■■□□□ 1.52
HMGA1-204ENST00000401473 DENND4BO75064 1496 aaPredicted RBP24.51■■□□□ 1.51
HMGA1-204ENST00000401473 CAMSAP2Q08AD1 1489 aa24.5■■□□□ 1.51
HMGA1-204ENST00000401473 AFAP1Q8N556 730 aa24.49■■□□□ 1.51
HMGA1-204ENST00000401473 ABCC1P33527 1531 aa24.49■■□□□ 1.51
HMGA1-204ENST00000401473 FRMPD1Q5SYB0 1578 aa24.49■■□□□ 1.51
HMGA1-204ENST00000401473 PTPN23Q9H3S7 1636 aa24.48■■□□□ 1.51
HMGA1-204ENST00000401473 KIAA1107Q9UPP5 1409 aa24.48■■□□□ 1.51
HMGA1-204ENST00000401473 POGZQ7Z3K3 1410 aa24.47■■□□□ 1.51
HMGA1-204ENST00000401473 TRAPPC8Q9Y2L5 1435 aa24.47■■□□□ 1.51
HMGA1-204ENST00000401473 MBD5Q9P267 1494 aa24.47■■□□□ 1.51
HMGA1-204ENST00000401473 SYCP2Q9BX26 1530 aa24.46■■□□□ 1.51
HMGA1-204ENST00000401473 FAM50AQ14320 339 aaKnown RBP24.46■■□□□ 1.51
HMGA1-204ENST00000401473 TCOF1Q13428 1488 aaKnown RBP24.45■■□□□ 1.5
HMGA1-204ENST00000401473 RICTORQ6R327 1708 aa24.45■■□□□ 1.5
HMGA1-204ENST00000401473 PLEKHH2Q8IVE3 1493 aa24.45■■□□□ 1.5
HMGA1-204ENST00000401473 RRBP1Q9P2E9 1410 aaKnown RBP24.43■■□□□ 1.5
HMGA1-204ENST00000401473 ZNF518AQ6AHZ1 1483 aa24.41■■□□□ 1.5
HMGA1-204ENST00000401473 RSPH4AQ5TD94 716 aa24.38■■□□□ 1.49
HMGA1-204ENST00000401473 KDM5CP41229 1560 aa24.37■■□□□ 1.49
HMGA1-204ENST00000401473 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.36■■□□□ 1.494e-21■□□□□ 9.5
HMGA1-204ENST00000401473 ZMYM4Q5VZL5 1548 aa24.36■■□□□ 1.49
HMGA1-204ENST00000401473 ABCC5O15440 1437 aa24.35■■□□□ 1.49
HMGA1-204ENST00000401473 ARHGEF5Q12774 1597 aa24.35■■□□□ 1.49
HMGA1-204ENST00000401473 YEATS2Q9ULM3 1422 aa24.34■■□□□ 1.49
HMGA1-204ENST00000401473 CCDC141Q6ZP82 1450 aa24.33■■□□□ 1.49
HMGA1-204ENST00000401473 TSPY4P0CV99 314 aa24.32■■□□□ 1.48
HMGA1-204ENST00000401473 TSPY10P0CW01 314 aa24.32■■□□□ 1.48
HMGA1-204ENST00000401473 SPAG9O60271 1321 aaKnown RBP24.32■■□□□ 1.48
HMGA1-204ENST00000401473 DAPK1P53355 1430 aa24.31■■□□□ 1.48
HMGA1-204ENST00000401473 ITGAEP38570 1179 aa24.31■■□□□ 1.48
HMGA1-204ENST00000401473 PTPRKQ15262 1439 aa24.31■■□□□ 1.48
HMGA1-204ENST00000401473 MLH3Q9UHC1 1453 aa24.31■■□□□ 1.48
HMGA1-204ENST00000401473 DNMT1P26358 1616 aaKnown RBP24.3■■□□□ 1.48
HMGA1-204ENST00000401473 MAGI2Q86UL8 1455 aa24.3■■□□□ 1.48
HMGA1-204ENST00000401473 CHIC2Q9UKJ5 165 aa24.28■■□□□ 1.48
HMGA1-204ENST00000401473 MYT1LQ9UL68 1186 aa24.28■■□□□ 1.48
HMGA1-204ENST00000401473 ZFYVE16Q7Z3T8 1539 aa24.27■■□□□ 1.48
HMGA1-204ENST00000401473 KIDINS220Q9ULH0 1771 aa24.27■■□□□ 1.48
HMGA1-204ENST00000401473 HECW2Q9P2P5 1572 aa24.27■■□□□ 1.47
HMGA1-204ENST00000401473 ARHGEF40Q8TER5 1519 aa24.25■■□□□ 1.47
HMGA1-204ENST00000401473 C9orf84Q5VXU9 1444 aa24.25■■□□□ 1.47
HMGA1-204ENST00000401473 RTEL1-TNFRSF6BF6WH68 1400 aa24.23■■□□□ 1.47
HMGA1-204ENST00000401473 CROCC2H7BZ55 1655 aa24.23■■□□□ 1.47
HMGA1-204ENST00000401473 INO80Q9ULG1 1556 aaPredicted RBP24.22■■□□□ 1.47
HMGA1-204ENST00000401473 ATP7AQ04656 1500 aa24.22■■□□□ 1.47
HMGA1-204ENST00000401473 ABCA6Q8N139 1617 aa24.21■■□□□ 1.47
HMGA1-204ENST00000401473 ATP10AO60312 1499 aa24.2■■□□□ 1.46
HMGA1-204ENST00000401473 SHANK2Q9UPX8 1470 aa24.2■■□□□ 1.46
HMGA1-204ENST00000401473 DIP2CQ9Y2E4 1556 aa24.2■■□□□ 1.46
HMGA1-204ENST00000401473 MAST1Q9Y2H9 1570 aa24.2■■□□□ 1.46
HMGA1-204ENST00000401473 RRP7BPQ9NSQ0 103 aa24.18■■□□□ 1.46
HMGA1-204ENST00000401473 NCOA1Q15788 1441 aa24.17■■□□□ 1.46
HMGA1-204ENST00000401473 SIGLEC1Q9BZZ2 1709 aa24.17■■□□□ 1.46
HMGA1-204ENST00000401473 ANKRD30AQ9BXX3 1397 aa24.13■■□□□ 1.45
HMGA1-204ENST00000401473 ADGRL2O95490 1459 aa24.13■■□□□ 1.45
HMGA1-204ENST00000401473 TRIM26Q12899 539 aaPredicted RBP24.13■■□□□ 1.45
HMGA1-204ENST00000401473 ARID4BQ4LE39 1312 aaPredicted RBP24.11■■□□□ 1.45
HMGA1-204ENST00000401473 ROCK1Q13464 1354 aa24.11■■□□□ 1.45
HMGA1-204ENST00000401473 KIF15Q9NS87 1388 aa24.11■■□□□ 1.45
HMGA1-204ENST00000401473 ADGBQ8N7X0 1667 aa24.1■■□□□ 1.45
HMGA1-204ENST00000401473 PLXNC1O60486 1568 aa24.1■■□□□ 1.45
HMGA1-204ENST00000401473 A2MP01023 1474 aa24.09■■□□□ 1.45
HMGA1-204ENST00000401473 DHX29Q7Z478 1369 aaKnown RBP24.09■■□□□ 1.45
HMGA1-204ENST00000401473 REREQ9P2R6 1566 aa24.08■■□□□ 1.45
HMGA1-204ENST00000401473 KDM4FA0A1W2PPD8 638 aa24.04■■□□□ 1.44
HMGA1-204ENST00000401473 MLECQ14165 292 aa24.03■■□□□ 1.44
HMGA1-204ENST00000401473 AGLP35573 1532 aa24.03■■□□□ 1.44
HMGA1-204ENST00000401473 DUOX2Q9NRD8 1548 aa24.03■■□□□ 1.44
HMGA1-204ENST00000401473 NAIPQ13075 1403 aa24.02■■□□□ 1.44
HMGA1-204ENST00000401473 KIF3BO15066 747 aa24■■□□□ 1.43
HMGA1-204ENST00000401473 ANKRD50Q9ULJ7 1429 aa24■■□□□ 1.43
HMGA1-204ENST00000401473 HFM1A2PYH4 1435 aa23.99■■□□□ 1.43
HMGA1-204ENST00000401473 BCORL1Q5H9F3 1711 aa23.97■■□□□ 1.43
HMGA1-204ENST00000401473 ERBINQ96RT1 1412 aa23.96■■□□□ 1.43
HMGA1-204ENST00000401473 GGT6Q6P531 493 aa23.96■■□□□ 1.43
HMGA1-204ENST00000401473 ADAMTSL3P82987 1691 aa23.93■■□□□ 1.42
HMGA1-204ENST00000401473 PCGF6Q9BYE7 350 aa23.92■■□□□ 1.42
HMGA1-204ENST00000401473 GCC2Q8IWJ2 1684 aa23.91■■□□□ 1.42
HMGA1-204ENST00000401473 SETD5Q9C0A6 1442 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms