RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 EFCAB2Q5VUJ9 269 aa23.46■■□□□ 1.35
COL18A1-204ENST00000400337 CHMP4BQ9H444 224 aaKnown RBP23.46■■□□□ 1.35
COL18A1-204ENST00000400337 CADPSQ9ULU8 1353 aa23.45■■□□□ 1.34
COL18A1-204ENST00000400337 FHOD3Q2V2M9 1422 aa23.45■■□□□ 1.34
COL18A1-204ENST00000400337 ANKRD30AQ9BXX3 1397 aa23.44■■□□□ 1.34
COL18A1-204ENST00000400337 TRIM44Q96DX7 344 aaPredicted RBP23.44■■□□□ 1.34
COL18A1-204ENST00000400337 KTN1Q86UP2 1357 aaKnown RBP23.43■■□□□ 1.34
COL18A1-204ENST00000400337 ROCK2O75116 1388 aaKnown RBP23.43■■□□□ 1.34
COL18A1-204ENST00000400337 RAPGEF2Q9Y4G8 1499 aa23.42■■□□□ 1.34
COL18A1-204ENST00000400337 TPRNQ4KMQ1 711 aa23.41■■□□□ 1.34
COL18A1-204ENST00000400337 HNRNPMP52272 730 aaKnown RBP eCLIP23.38■■□□□ 1.336e-10■■■■■ 33.9
COL18A1-204ENST00000400337 OS9Q13438 667 aaPredicted RBP23.38■■□□□ 1.33
COL18A1-204ENST00000400337 L3MBTL2Q969R5 705 aa23.37■■□□□ 1.33
COL18A1-204ENST00000400337 NOP58Q9Y2X3 529 aaKnown RBP23.36■■□□□ 1.33
COL18A1-204ENST00000400337 HDGFL2Q7Z4V5 671 aaPredicted RBP23.34■■□□□ 1.33
COL18A1-204ENST00000400337 KIF3BO15066 747 aa23.34■■□□□ 1.33
COL18A1-204ENST00000400337 ATAD2BQ9ULI0 1458 aa23.32■■□□□ 1.32
COL18A1-204ENST00000400337 RALBP1Q15311 655 aa23.31■■□□□ 1.32
COL18A1-204ENST00000400337 ZRSR1Q15695 479 aaKnown RBP23.3■■□□□ 1.32
COL18A1-204ENST00000400337 HSP90AB1P08238 724 aaKnown RBP23.3■■□□□ 1.32
COL18A1-204ENST00000400337 U2AF1L5P0DN76 240 aaPredicted RBP23.29■■□□□ 1.32
COL18A1-204ENST00000400337 U2AF1Q01081 240 aaKnown RBP eCLIP23.29■■□□□ 1.322e-9■■■□□ 17.5
COL18A1-204ENST00000400337 PTMAP06454 111 aaKnown RBP23.28■■□□□ 1.32
COL18A1-204ENST00000400337 CDK11BP21127 795 aaKnown RBP23.27■■□□□ 1.32
COL18A1-204ENST00000400337 JPH4Q96JJ6 628 aa23.27■■□□□ 1.32
COL18A1-204ENST00000400337 RTF1Q92541 710 aaKnown RBP23.26■■□□□ 1.31
COL18A1-204ENST00000400337 RUSC2Q8N2Y8 1516 aa23.26■■□□□ 1.31
COL18A1-204ENST00000400337 RCAN3Q9UKA8 241 aa23.26■■□□□ 1.31
COL18A1-204ENST00000400337 KCNJ4P48050 445 aa23.25■■□□□ 1.31
COL18A1-204ENST00000400337 CCDC18Q5T9S5 1454 aa23.25■■□□□ 1.31
COL18A1-204ENST00000400337 TAOK2Q9UL54 1235 aa23.24■■□□□ 1.31
COL18A1-204ENST00000400337 NPHP1O15259 732 aa23.23■■□□□ 1.31
COL18A1-204ENST00000400337 SPAG9O60271 1321 aaKnown RBP23.23■■□□□ 1.31
COL18A1-204ENST00000400337 FGD1P98174 961 aa23.23■■□□□ 1.31
COL18A1-204ENST00000400337 RSPH4AQ5TD94 716 aa23.22■■□□□ 1.31
COL18A1-204ENST00000400337 SMARCA4P51532 1647 aa23.21■■□□□ 1.31
COL18A1-204ENST00000400337 PAK3O75914 559 aaPredicted RBP23.2■■□□□ 1.3
COL18A1-204ENST00000400337 EIF3AQ14152 1382 aaKnown RBP23.19■■□□□ 1.3
COL18A1-204ENST00000400337 NUTM2DQ5VT03 806 aaPredicted RBP23.19■■□□□ 1.3
COL18A1-204ENST00000400337 IPO8O15397 1037 aaKnown RBP23.19■■□□□ 1.3
COL18A1-204ENST00000400337 HSCBQ8IWL3 235 aa23.19■■□□□ 1.3
COL18A1-204ENST00000400337 RBM19Q9Y4C8 960 aaKnown RBP23.18■■□□□ 1.3
COL18A1-204ENST00000400337 APBB1O00213 710 aa23.16■■□□□ 1.3
COL18A1-204ENST00000400337 WASHC2CQ9Y4E1 1318 aa23.16■■□□□ 1.3
COL18A1-204ENST00000400337 NAP1L2Q9ULW6 460 aaPredicted RBP23.16■■□□□ 1.3
COL18A1-204ENST00000400337 PLCB2Q00722 1185 aa23.15■■□□□ 1.3
COL18A1-204ENST00000400337 SPRYD3Q8NCJ5 442 aa23.14■■□□□ 1.29
COL18A1-204ENST00000400337 DHX57Q6P158 1386 aaKnown RBP23.14■■□□□ 1.29
COL18A1-204ENST00000400337 ERICH6BQ5W0A0 696 aa23.14■■□□□ 1.29
COL18A1-204ENST00000400337 FANCD2Q9BXW9 1451 aa23.13■■□□□ 1.29
COL18A1-204ENST00000400337 DNTTIP2Q5QJE6 756 aaKnown RBP23.13■■□□□ 1.29
COL18A1-204ENST00000400337 ITPRIPQ8IWB1 547 aa23.13■■□□□ 1.29
COL18A1-204ENST00000400337 CALD1Q05682 793 aaKnown RBP23.12■■□□□ 1.29
COL18A1-204ENST00000400337 NLRP13Q86W25 1043 aa23.12■■□□□ 1.29
COL18A1-204ENST00000400337 GOLGA2Q08379 1002 aa23.11■■□□□ 1.29
COL18A1-204ENST00000400337 TERF2IPQ9NYB0 399 aa23.11■■□□□ 1.29
COL18A1-204ENST00000400337 CCDC146Q8IYE0 955 aa23.1■■□□□ 1.29
COL18A1-204ENST00000400337 ST20-MTHFSA0A0A6YYL1 179 aa23.08■■□□□ 1.29
COL18A1-204ENST00000400337 MCCP23508 829 aa23.08■■□□□ 1.29
COL18A1-204ENST00000400337 RWDD1Q9H446 243 aaPredicted RBP23.08■■□□□ 1.29
COL18A1-204ENST00000400337 TRAK1Q9UPV9 953 aa23.07■■□□□ 1.28
COL18A1-204ENST00000400337 RTN4Q9NQC3 1192 aaKnown RBP23.06■■□□□ 1.28
COL18A1-204ENST00000400337 CSB-PGBD3P0DP91 1061 aa23.04■■□□□ 1.28
COL18A1-204ENST00000400337 CCDC144AA2RUR9 1427 aa23.04■■□□□ 1.28
COL18A1-204ENST00000400337 SMC4Q9NTJ3 1288 aa23.03■■□□□ 1.28
COL18A1-204ENST00000400337 CFAP44Q96MT7 982 aa23.02■■□□□ 1.28
COL18A1-204ENST00000400337 GOLGA6L4A6NEF3 574 aa23.02■■□□□ 1.28
COL18A1-204ENST00000400337 TULP1O00294 542 aaPredicted RBP23.02■■□□□ 1.28
COL18A1-204ENST00000400337 TCERG1O14776 1098 aaKnown RBP23.02■■□□□ 1.28
COL18A1-204ENST00000400337 CLUAP1Q96AJ1 413 aa23.01■■□□□ 1.27
COL18A1-204ENST00000400337 PTPRGP23470 1445 aa23■■□□□ 1.27
COL18A1-204ENST00000400337 PANK3Q9H999 370 aa23■■□□□ 1.27
COL18A1-204ENST00000400337 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.99■■□□□ 1.273e-6■■□□□ 13.3
COL18A1-204ENST00000400337 EID1Q9Y6B2 187 aa22.99■■□□□ 1.27
COL18A1-204ENST00000400337 KIF15Q9NS87 1388 aa22.99■■□□□ 1.27
COL18A1-204ENST00000400337 NAP1L5Q96NT1 182 aaPredicted RBP22.98■■□□□ 1.27
COL18A1-204ENST00000400337 NUTM2FA1L443 756 aa22.98■■□□□ 1.27
COL18A1-204ENST00000400337 PDE3BQ13370 1112 aa22.98■■□□□ 1.27
COL18A1-204ENST00000400337 NGDNQ8NEJ9 315 aaKnown RBP22.98■■□□□ 1.27
COL18A1-204ENST00000400337 STK31Q9BXU1 1019 aa22.98■■□□□ 1.27
COL18A1-204ENST00000400337 ZNF330Q9Y3S2 320 aaPredicted RBP22.97■■□□□ 1.27
COL18A1-204ENST00000400337 PMFBP1Q8TBY8 1022 aa22.97■■□□□ 1.27
COL18A1-204ENST00000400337 IGF1RP08069 1367 aa22.97■■□□□ 1.27
COL18A1-204ENST00000400337 MYBBP1AQ9BQG0 1328 aaKnown RBP22.96■■□□□ 1.27
COL18A1-204ENST00000400337 KIAA1211Q6ZU35 1233 aa22.96■■□□□ 1.27
COL18A1-204ENST00000400337 CENPJQ9HC77 1338 aaPredicted RBP22.96■■□□□ 1.27
COL18A1-204ENST00000400337 PHLDB1Q86UU1 1377 aa22.93■■□□□ 1.26
COL18A1-204ENST00000400337 FGD5Q6ZNL6 1462 aa22.93■■□□□ 1.26
COL18A1-204ENST00000400337 RRP7AQ9Y3A4 280 aaKnown RBP22.93■■□□□ 1.26
COL18A1-204ENST00000400337 SLKQ9H2G2 1235 aaPredicted RBP22.92■■□□□ 1.26
COL18A1-204ENST00000400337 PRKRIP1Q9H875 184 aaPredicted RBP22.92■■□□□ 1.26
COL18A1-204ENST00000400337 AMPHP49418 695 aa22.91■■□□□ 1.26
COL18A1-204ENST00000400337 USP47Q96K76 1375 aa22.9■■□□□ 1.26
COL18A1-204ENST00000400337 GOLGA6L6A8MZA4 724 aa22.89■■□□□ 1.26
COL18A1-204ENST00000400337 SLC4A10Q6U841 1118 aa22.89■■□□□ 1.26
COL18A1-204ENST00000400337 GAPVD1Q14C86 1478 aa22.89■■□□□ 1.26
COL18A1-204ENST00000400337 RAD54L2Q9Y4B4 1467 aa22.89■■□□□ 1.26
COL18A1-204ENST00000400337 MFAP1P55081 439 aaKnown RBP22.89■■□□□ 1.25
COL18A1-204ENST00000400337 LTV1Q96GA3 475 aaPredicted RBP22.89■■□□□ 1.25
COL18A1-204ENST00000400337 DEKP35659 375 aaKnown RBP22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 313.4 ms