RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 NUP153P49790 1475 aaKnown RBP26.26■■□□□ 1.8
CBX1-202ENST00000393408 ABCC5O15440 1437 aa26.26■■□□□ 1.79
CBX1-202ENST00000393408 RAPGEF6Q8TEU7 1601 aa26.25■■□□□ 1.79
CBX1-202ENST00000393408 ANKRD30BQ9BXX2 1392 aa26.25■■□□□ 1.79
CBX1-202ENST00000393408 RPRD2Q5VT52 1461 aaKnown RBP26.25■■□□□ 1.79
CBX1-202ENST00000393408 CNTLNQ9NXG0 1405 aa26.25■■□□□ 1.79
CBX1-202ENST00000393408 FOXD1Q16676 465 aa26.24■■□□□ 1.79
CBX1-202ENST00000393408 TEX14Q8IWB6 1497 aa26.21■■□□□ 1.79
CBX1-202ENST00000393408 NCOA1Q15788 1441 aa26.21■■□□□ 1.79
CBX1-202ENST00000393408 HNRNPUQ00839 825 aaKnown RBP eCLIP26.2■■□□□ 1.79
CBX1-202ENST00000393408 ZNF644Q9H582 1327 aaPredicted RBP26.17■■□□□ 1.78
CBX1-202ENST00000393408 CCDC7Q96M83 1385 aa26.17■■□□□ 1.78
CBX1-202ENST00000393408 GRIN2AQ12879 1464 aa26.17■■□□□ 1.78
CBX1-202ENST00000393408 C11orf95C9JLR9 678 aaPredicted RBP26.15■■□□□ 1.78
CBX1-202ENST00000393408 POLR1AO95602 1720 aaPredicted RBP26.14■■□□□ 1.77
CBX1-202ENST00000393408 NBPF8Q3BBV2 869 aa26.14■■□□□ 1.77
CBX1-202ENST00000393408 CDK11AQ9UQ88 783 aaPredicted RBP26.13■■□□□ 1.77
CBX1-202ENST00000393408 EIF4G3O43432 1585 aaKnown RBP26.13■■□□□ 1.77
CBX1-202ENST00000393408 ITSN2Q9NZM3 1697 aa26.1■■□□□ 1.77
CBX1-202ENST00000393408 TROQ12816 1431 aaPredicted RBP26.1■■□□□ 1.77
CBX1-202ENST00000393408 SPATA31E1Q6ZUB1 1445 aa26.1■■□□□ 1.77
CBX1-202ENST00000393408 SLC4A1APQ9BWU0 796 aaKnown RBP26.1■■□□□ 1.77
CBX1-202ENST00000393408 ADGBQ8N7X0 1667 aa26.1■■□□□ 1.77
CBX1-202ENST00000393408 CAMSAP2Q08AD1 1489 aa26.09■■□□□ 1.77
CBX1-202ENST00000393408 PZPP20742 1482 aa26.08■■□□□ 1.77
CBX1-202ENST00000393408 CCDC184Q52MB2 194 aa26.07■■□□□ 1.76
CBX1-202ENST00000393408 PRKRIP1Q9H875 184 aaPredicted RBP26.07■■□□□ 1.76
CBX1-202ENST00000393408 PRG4Q92954 1404 aaPredicted RBP26.07■■□□□ 1.76
CBX1-202ENST00000393408 ANP32EQ9BTT0 268 aa26.07■■□□□ 1.76
CBX1-202ENST00000393408 ADCY10Q96PN6 1610 aa26.06■■□□□ 1.76
CBX1-202ENST00000393408 RBM19Q9Y4C8 960 aaKnown RBP26.05■■□□□ 1.76
CBX1-202ENST00000393408 CROCC2H7BZ55 1655 aa26.04■■□□□ 1.76
CBX1-202ENST00000393408 GPATCH8Q9UKJ3 1502 aaKnown RBP26.03■■□□□ 1.76
CBX1-202ENST00000393408 ADGRL2O95490 1459 aa26.02■■□□□ 1.76
CBX1-202ENST00000393408 KIF7Q2M1P5 1343 aa26.02■■□□□ 1.76
CBX1-202ENST00000393408 KIF14Q15058 1648 aa26.01■■□□□ 1.75
CBX1-202ENST00000393408 CEP170Q5SW79 1584 aa26.01■■□□□ 1.75
CBX1-202ENST00000393408 PLB1Q6P1J6 1458 aa26■■□□□ 1.75
CBX1-202ENST00000393408 MAGI1Q96QZ7 1491 aaPredicted RBP26■■□□□ 1.75
CBX1-202ENST00000393408 CFDP1Q9UEE9 299 aaPredicted RBP26■■□□□ 1.75
CBX1-202ENST00000393408 MBD5Q9P267 1494 aa26■■□□□ 1.75
CBX1-202ENST00000393408 KIAA1107Q9UPP5 1409 aa25.96■■□□□ 1.75
CBX1-202ENST00000393408 MRS2Q9HD23 443 aa25.95■■□□□ 1.75
CBX1-202ENST00000393408 SYNJ2O15056 1496 aa25.95■■□□□ 1.74
CBX1-202ENST00000393408 IRX6P78412 446 aaPredicted RBP25.94■■□□□ 1.74
CBX1-202ENST00000393408 ERICH6BQ5W0A0 696 aa25.93■■□□□ 1.74
CBX1-202ENST00000393408 FAM9BQ8IZU0 186 aa25.92■■□□□ 1.74
CBX1-202ENST00000393408 ZBED9Q6R2W3 1325 aa25.91■■□□□ 1.74
CBX1-202ENST00000393408 ANKRD30AQ9BXX3 1397 aa25.9■■□□□ 1.74
CBX1-202ENST00000393408 CHMP7Q8WUX9 453 aaPredicted RBP25.89■■□□□ 1.74
CBX1-202ENST00000393408 CARMIL2Q6F5E8 1435 aa25.88■■□□□ 1.73
CBX1-202ENST00000393408 BCORL1Q5H9F3 1711 aa25.88■■□□□ 1.73
CBX1-202ENST00000393408 ZNF777Q9ULD5 760 aaPredicted RBP25.88■■□□□ 1.73
CBX1-202ENST00000393408 CDC42BPAQ5VT25 1732 aa25.87■■□□□ 1.73
CBX1-202ENST00000393408 NUP160Q12769 1436 aa25.86■■□□□ 1.73
CBX1-202ENST00000393408 PKD2Q13563 968 aa25.85■■□□□ 1.73
CBX1-202ENST00000393408 ANKRD50Q9ULJ7 1429 aa25.85■■□□□ 1.73
CBX1-202ENST00000393408 DHX29Q7Z478 1369 aaKnown RBP25.84■■□□□ 1.73
CBX1-202ENST00000393408 USP47Q96K76 1375 aa25.84■■□□□ 1.73
CBX1-202ENST00000393408 KDM5CP41229 1560 aa25.84■■□□□ 1.73
CBX1-202ENST00000393408 SHANK2Q9UPX8 1470 aa25.83■■□□□ 1.73
CBX1-202ENST00000393408 PPP4R2Q9NY27 417 aa25.82■■□□□ 1.72
CBX1-202ENST00000393408 ABCA8O94911 1581 aa25.82■■□□□ 1.72
CBX1-202ENST00000393408 ABCC10Q5T3U5 1492 aa25.81■■□□□ 1.72
CBX1-202ENST00000393408 JPH4Q96JJ6 628 aa25.81■■□□□ 1.72
CBX1-202ENST00000393408 ERCC6Q03468 1493 aa25.81■■□□□ 1.72
CBX1-202ENST00000393408 UHRF1BP1Q6BDS2 1440 aa25.8■■□□□ 1.72
CBX1-202ENST00000393408 KDM5DQ9BY66 1539 aa25.77■■□□□ 1.72
CBX1-202ENST00000393408 ARID4BQ4LE39 1312 aaPredicted RBP25.77■■□□□ 1.72
CBX1-202ENST00000393408 C9orf84Q5VXU9 1444 aa25.77■■□□□ 1.72
CBX1-202ENST00000393408 RALGAPBQ86X10 1494 aa25.76■■□□□ 1.72
CBX1-202ENST00000393408 FBLN2P98095 1184 aa25.76■■□□□ 1.71
CBX1-202ENST00000393408 ZNF326Q5BKZ1 582 aaKnown RBP25.76■■□□□ 1.71
CBX1-202ENST00000393408 ATP10BO94823 1461 aa25.75■■□□□ 1.71
CBX1-202ENST00000393408 ARHGEF12Q9NZN5 1544 aa25.75■■□□□ 1.71
CBX1-202ENST00000393408 PLEKHD1A6NEE1 506 aa25.75■■□□□ 1.71
CBX1-202ENST00000393408 NUP155O75694 1391 aa25.73■■□□□ 1.71
CBX1-202ENST00000393408 FANCIQ9NVI1 1328 aa25.71■■□□□ 1.71
CBX1-202ENST00000393408 SMG6Q86US8 1419 aaKnown RBP25.69■■□□□ 1.7
CBX1-202ENST00000393408 ARHGEF5Q12774 1597 aa25.69■■□□□ 1.7
CBX1-202ENST00000393408 ROCK2O75116 1388 aaKnown RBP25.68■■□□□ 1.7
CBX1-202ENST00000393408 PTPRGP23470 1445 aa25.68■■□□□ 1.7
CBX1-202ENST00000393408 MSH5O43196 834 aa25.67■■□□□ 1.7
CBX1-202ENST00000393408 POLR3GLQ9BT43 218 aa25.67■■□□□ 1.7
CBX1-202ENST00000393408 TSPY4P0CV99 314 aa25.64■■□□□ 1.7
CBX1-202ENST00000393408 TSPY10P0CW01 314 aa25.64■■□□□ 1.7
CBX1-202ENST00000393408 KIF15Q9NS87 1388 aa25.64■■□□□ 1.7
CBX1-202ENST00000393408 CARD11Q9BXL7 1154 aa25.63■■□□□ 1.69
CBX1-202ENST00000393408 B4GALNT3Q6L9W6 998 aa25.62■■□□□ 1.69
CBX1-202ENST00000393408 CNGB1Q14028 1251 aaPredicted RBP25.59■■□□□ 1.69
CBX1-202ENST00000393408 HNRNPMP52272 730 aaKnown RBP eCLIP25.58■■□□□ 1.69
CBX1-202ENST00000393408 NUDCQ9Y266 331 aa25.58■■□□□ 1.69
CBX1-202ENST00000393408 SAMD9LQ8IVG5 1584 aa25.58■■□□□ 1.68
CBX1-202ENST00000393408 CDC42BPBQ9Y5S2 1711 aa25.57■■□□□ 1.68
CBX1-202ENST00000393408 PNISRQ8TF01 805 aaKnown RBP25.57■■□□□ 1.68
CBX1-202ENST00000393408 E9PCH4 1651 aa25.57■■□□□ 1.68
CBX1-202ENST00000393408 PREX2Q70Z35 1606 aa25.56■■□□□ 1.68
CBX1-202ENST00000393408 CCDC141Q6ZP82 1450 aa25.56■■□□□ 1.68
CBX1-202ENST00000393408 RNF123Q5XPI4 1314 aa25.56■■□□□ 1.68
CBX1-202ENST00000393408 FAM135AQ9P2D6 1515 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms