RNA–Protein interactions for RNA: ENST00000389416.8

PTPRN2-202, Transcript of protein tyrosine phosphatase, receptor type N2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRN2, Length 4,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN2-202ENST00000389416 TMF1P82094 1093 aa17.5■□□□□ 0.39
PTPRN2-202ENST00000389416 CC2D1BQ5T0F9 858 aaKnown RBP17.5■□□□□ 0.39
PTPRN2-202ENST00000389416 HDGFP51858 240 aaKnown RBP17.49■□□□□ 0.39
PTPRN2-202ENST00000389416 PRXQ9BXM0 1461 aa17.49■□□□□ 0.39
PTPRN2-202ENST00000389416 ARAP1Q96P48 1450 aa17.48■□□□□ 0.39
PTPRN2-202ENST00000389416 A0A0G2JS52 829 aa17.47■□□□□ 0.39
PTPRN2-202ENST00000389416 IRX6P78412 446 aaPredicted RBP17.47■□□□□ 0.39
PTPRN2-202ENST00000389416 SRPK2P78362 688 aaKnown RBP17.47■□□□□ 0.39
PTPRN2-202ENST00000389416 NUTM2DQ5VT03 806 aaPredicted RBP17.47■□□□□ 0.39
PTPRN2-202ENST00000389416 PRG4Q92954 1404 aaPredicted RBP17.47■□□□□ 0.39
PTPRN2-202ENST00000389416 CFAP53Q96M91 514 aa17.46■□□□□ 0.39
PTPRN2-202ENST00000389416 FAM69CQ0P6D2 419 aa17.46■□□□□ 0.39
PTPRN2-202ENST00000389416 DNMBPQ6XZF7 1577 aa17.46■□□□□ 0.39
PTPRN2-202ENST00000389416 SNAPC4Q5SXM2 1469 aa17.45■□□□□ 0.38
PTPRN2-202ENST00000389416 HAP1P54257 671 aaPredicted RBP17.45■□□□□ 0.38
PTPRN2-202ENST00000389416 PHLDB1Q86UU1 1377 aa17.44■□□□□ 0.38
PTPRN2-202ENST00000389416 NEUROD2Q15784 382 aa17.44■□□□□ 0.38
PTPRN2-202ENST00000389416 ERICH3Q5RHP9 1530 aa17.43■□□□□ 0.38
PTPRN2-202ENST00000389416 LAMC3Q9Y6N6 1575 aa17.42■□□□□ 0.38
PTPRN2-202ENST00000389416 CASKIN1Q8WXD9 1431 aa17.4■□□□□ 0.38
PTPRN2-202ENST00000389416 ROCK2O75116 1388 aaKnown RBP17.4■□□□□ 0.38
PTPRN2-202ENST00000389416 PRDM2Q13029 1718 aa17.4■□□□□ 0.38
PTPRN2-202ENST00000389416 SOX12O15370 315 aa17.39■□□□□ 0.38
PTPRN2-202ENST00000389416 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.39■□□□□ 0.38
PTPRN2-202ENST00000389416 DHX57Q6P158 1386 aaKnown RBP17.39■□□□□ 0.37
PTPRN2-202ENST00000389416 PEG3Q9GZU2 1588 aa17.39■□□□□ 0.37
PTPRN2-202ENST00000389416 CCDC136Q96JN2 1154 aa17.39■□□□□ 0.37
PTPRN2-202ENST00000389416 FGD6Q6ZV73 1430 aa17.39■□□□□ 0.37
PTPRN2-202ENST00000389416 LRRC9Q6ZRR7 1453 aa17.38■□□□□ 0.37
PTPRN2-202ENST00000389416 MYOM3Q5VTT5 1437 aa17.38■□□□□ 0.37
PTPRN2-202ENST00000389416 AFAP1Q8N556 730 aa17.36■□□□□ 0.37
PTPRN2-202ENST00000389416 ABCA10Q8WWZ4 1543 aa17.35■□□□□ 0.37
PTPRN2-202ENST00000389416 U2SURPO15042 1029 aaKnown RBP17.35■□□□□ 0.37
PTPRN2-202ENST00000389416 NPM2Q86SE8 214 aaKnown RBP17.34■□□□□ 0.37
PTPRN2-202ENST00000389416 NUDCQ9Y266 331 aa17.33■□□□□ 0.37
PTPRN2-202ENST00000389416 NCOA2Q15596 1464 aa17.33■□□□□ 0.36
PTPRN2-202ENST00000389416 RTL5Q5HYW3 569 aaPredicted RBP17.33■□□□□ 0.36
PTPRN2-202ENST00000389416 URB2Q14146 1524 aaKnown RBP17.31■□□□□ 0.36
PTPRN2-202ENST00000389416 CCDC144AA2RUR9 1427 aa17.31■□□□□ 0.36
PTPRN2-202ENST00000389416 SYNJ2O15056 1496 aa17.3■□□□□ 0.36
PTPRN2-202ENST00000389416 KIF15Q9NS87 1388 aa17.3■□□□□ 0.36
PTPRN2-202ENST00000389416 MORC1Q86VD1 984 aa17.3■□□□□ 0.36
PTPRN2-202ENST00000389416 MAPK8IP3Q9UPT6 1336 aa17.3■□□□□ 0.36
PTPRN2-202ENST00000389416 TRAK1Q9UPV9 953 aa17.29■□□□□ 0.36
PTPRN2-202ENST00000389416 LAS1LQ9Y4W2 734 aaKnown RBP17.28■□□□□ 0.36
PTPRN2-202ENST00000389416 FYCO1Q9BQS8 1478 aa17.27■□□□□ 0.36
PTPRN2-202ENST00000389416 EID1Q9Y6B2 187 aa17.27■□□□□ 0.36
PTPRN2-202ENST00000389416 SUPT16HQ9Y5B9 1047 aaKnown RBP17.26■□□□□ 0.35
PTPRN2-202ENST00000389416 KIAA0586Q9BVV6 1533 aa17.26■□□□□ 0.35
PTPRN2-202ENST00000389416 ZNF608Q9ULD9 1512 aaPredicted RBP17.26■□□□□ 0.35
PTPRN2-202ENST00000389416 ST20-MTHFSA0A0A6YYL1 179 aa17.25■□□□□ 0.35
PTPRN2-202ENST00000389416 NUTM2FA1L443 756 aa17.24■□□□□ 0.35
PTPRN2-202ENST00000389416 HDGFL2Q7Z4V5 671 aaPredicted RBP17.24■□□□□ 0.35
PTPRN2-202ENST00000389416 EFCAB5A4FU69 1503 aa17.23■□□□□ 0.35
PTPRN2-202ENST00000389416 ANP32AP39687 249 aaKnown RBP17.22■□□□□ 0.35
PTPRN2-202ENST00000389416 ANKRD50Q9ULJ7 1429 aa17.22■□□□□ 0.35
PTPRN2-202ENST00000389416 PAK3O75914 559 aaPredicted RBP17.21■□□□□ 0.35
PTPRN2-202ENST00000389416 ARHGAP5Q13017 1502 aa17.2■□□□□ 0.34
PTPRN2-202ENST00000389416 VGFO15240 615 aaPredicted RBP17.18■□□□□ 0.34
PTPRN2-202ENST00000389416 KTN1Q86UP2 1357 aaKnown RBP17.18■□□□□ 0.34
PTPRN2-202ENST00000389416 TROQ12816 1431 aaPredicted RBP17.18■□□□□ 0.34
PTPRN2-202ENST00000389416 ARXQ96QS3 562 aa17.17■□□□□ 0.34
PTPRN2-202ENST00000389416 EIF3AQ14152 1382 aaKnown RBP17.17■□□□□ 0.34
PTPRN2-202ENST00000389416 CCER2I3L3R5 266 aa17.16■□□□□ 0.34
PTPRN2-202ENST00000389416 GRIN2AQ12879 1464 aa17.15■□□□□ 0.34
PTPRN2-202ENST00000389416 FRAT1Q92837 279 aaPredicted RBP17.15■□□□□ 0.34
PTPRN2-202ENST00000389416 RAPGEF3O95398 923 aa17.14■□□□□ 0.33
PTPRN2-202ENST00000389416 MYH16Q9H6N6 1097 aa17.14■□□□□ 0.33
PTPRN2-202ENST00000389416 UPF2Q9HAU5 1272 aaKnown RBP17.14■□□□□ 0.33
PTPRN2-202ENST00000389416 CDK13Q14004 1512 aaKnown RBP17.13■□□□□ 0.33
PTPRN2-202ENST00000389416 UACAQ9BZF9 1416 aa17.13■□□□□ 0.33
PTPRN2-202ENST00000389416 IQGAP2Q13576 1575 aa17.13■□□□□ 0.33
PTPRN2-202ENST00000389416 U2AF1L5P0DN76 240 aaPredicted RBP17.12■□□□□ 0.33
PTPRN2-202ENST00000389416 U2AF1Q01081 240 aaKnown RBP eCLIP17.12■□□□□ 0.33
PTPRN2-202ENST00000389416 PLB1Q6P1J6 1458 aa17.12■□□□□ 0.33
PTPRN2-202ENST00000389416 TERF2IPQ9NYB0 399 aa17.12■□□□□ 0.33
PTPRN2-202ENST00000389416 RRBP1Q9P2E9 1410 aaKnown RBP17.12■□□□□ 0.33
PTPRN2-202ENST00000389416 MAGI1Q96QZ7 1491 aaPredicted RBP17.12■□□□□ 0.33
PTPRN2-202ENST00000389416 NGDNQ8NEJ9 315 aaKnown RBP17.11■□□□□ 0.33
PTPRN2-202ENST00000389416 FTSJ3Q8IY81 847 aaKnown RBP17.11■□□□□ 0.33
PTPRN2-202ENST00000389416 SCAPERQ9BY12 1400 aa17.11■□□□□ 0.33
PTPRN2-202ENST00000389416 RALBP1Q15311 655 aa17.1■□□□□ 0.33
PTPRN2-202ENST00000389416 EPRSP07814 1512 aaKnown RBP17.1■□□□□ 0.33
PTPRN2-202ENST00000389416 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.09■□□□□ 0.338e-7■■■□□ 16.5
PTPRN2-202ENST00000389416 PNNQ9H307 717 aaKnown RBP17.09■□□□□ 0.33
PTPRN2-202ENST00000389416 USP47Q96K76 1375 aa17.08■□□□□ 0.33
PTPRN2-202ENST00000389416 MINK1Q8N4C8 1332 aaPredicted RBP17.08■□□□□ 0.33
PTPRN2-202ENST00000389416 TIAM1Q13009 1591 aa17.08■□□□□ 0.33
PTPRN2-202ENST00000389416 HSP90AA1P07900 732 aaKnown RBP17.08■□□□□ 0.32
PTPRN2-202ENST00000389416 PANK3Q9H999 370 aa17.08■□□□□ 0.32
PTPRN2-202ENST00000389416 EHBP1L1Q8N3D4 1523 aa17.07■□□□□ 0.32
PTPRN2-202ENST00000389416 MIA2Q96PC5 1412 aa17.06■□□□□ 0.32
PTPRN2-202ENST00000389416 C9orf84Q5VXU9 1444 aa17.06■□□□□ 0.32
PTPRN2-202ENST00000389416 HECW1Q76N89 1606 aa17.06■□□□□ 0.32
PTPRN2-202ENST00000389416 CUL7Q14999 1698 aa17.05■□□□□ 0.32
PTPRN2-202ENST00000389416 BIVM-ERCC5R4GMW8 1640 aa17.03■□□□□ 0.32
PTPRN2-202ENST00000389416 NLRP13Q86W25 1043 aa17.03■□□□□ 0.32
PTPRN2-202ENST00000389416 TMEM132EQ6IEE7 984 aa17.02■□□□□ 0.32
PTPRN2-202ENST00000389416 CSB-PGBD3P0DP91 1061 aa17.01■□□□□ 0.31
PTPRN2-202ENST00000389416 ARHGEF11O15085 1522 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms