RNA–Protein interactions for RNA: ENST00000389416.8

PTPRN2-202, Transcript of protein tyrosine phosphatase, receptor type N2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRN2, Length 4,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN2-202ENST00000389416 NISCHQ9Y2I1 1504 aa24.39■■□□□ 1.49
PTPRN2-202ENST00000389416 DCAF8L2P0C7V8 631 aa24.04■■□□□ 1.44
PTPRN2-202ENST00000389416 SHROOM4Q9ULL8 1493 aa22.61■■□□□ 1.21
PTPRN2-202ENST00000389416 SUPT5HO00267 1087 aaKnown RBP22.57■■□□□ 1.2
PTPRN2-202ENST00000389416 EHMT2Q96KQ7 1210 aa21.56■■□□□ 1.04
PTPRN2-202ENST00000389416 FAM9AQ8IZU1 332 aaPredicted RBP21.2■□□□□ 0.98
PTPRN2-202ENST00000389416 ABCC9O60706 1549 aa21.09■□□□□ 0.97
PTPRN2-202ENST00000389416 TRIM41Q8WV44 630 aa20.91■□□□□ 0.94
PTPRN2-202ENST00000389416 APLP2Q06481 763 aa20.76■□□□□ 0.91
PTPRN2-202ENST00000389416 RANGAP1P46060 587 aaPredicted RBP20.75■□□□□ 0.91
PTPRN2-202ENST00000389416 PABPN1Q86U42 306 aaKnown RBP eCLIP20.74■□□□□ 0.91
PTPRN2-202ENST00000389416 TTBK1Q5TCY1 1321 aaPredicted RBP20.69■□□□□ 0.9
PTPRN2-202ENST00000389416 UBTFP17480 764 aaKnown RBP20.53■□□□□ 0.88
PTPRN2-202ENST00000389416 ATP1B4Q9UN42 357 aaPredicted RBP20.42■□□□□ 0.86
PTPRN2-202ENST00000389416 PCGF6Q9BYE7 350 aa20.41■□□□□ 0.86
PTPRN2-202ENST00000389416 CHIC1Q5VXU3 224 aa20.32■□□□□ 0.84
PTPRN2-202ENST00000389416 ZCCHC6Q5VYS8 1495 aaKnown RBP20.2■□□□□ 0.82
PTPRN2-202ENST00000389416 CCDC180Q9P1Z9 1646 aa20.18■□□□□ 0.82
PTPRN2-202ENST00000389416 LOC105371045A0A1W2PR82 267 aa20.17■□□□□ 0.82
PTPRN2-202ENST00000389416 PPARGC1BQ86YN6 1023 aaKnown RBP20.17■□□□□ 0.82
PTPRN2-202ENST00000389416 SCRIBQ14160 1630 aa20.05■□□□□ 0.8
PTPRN2-202ENST00000389416 CCER1Q8TC90 406 aaPredicted RBP19.93■□□□□ 0.78
PTPRN2-202ENST00000389416 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.85■□□□□ 0.77
PTPRN2-202ENST00000389416 HNRNPUL2Q1KMD3 747 aaKnown RBP19.85■□□□□ 0.77
PTPRN2-202ENST00000389416 ITGAEP38570 1179 aa19.74■□□□□ 0.75
PTPRN2-202ENST00000389416 RB1CC1Q8TDY2 1594 aa19.7■□□□□ 0.74
PTPRN2-202ENST00000389416 TRIM26Q12899 539 aaPredicted RBP19.69■□□□□ 0.74
PTPRN2-202ENST00000389416 ZEB1P37275 1124 aaPredicted RBP19.65■□□□□ 0.74
PTPRN2-202ENST00000389416 FBLN2P98095 1184 aa19.59■□□□□ 0.73
PTPRN2-202ENST00000389416 NACADO15069 1562 aa19.57■□□□□ 0.72
PTPRN2-202ENST00000389416 MYT1LQ9UL68 1186 aa19.55■□□□□ 0.72
PTPRN2-202ENST00000389416 CSRNP3Q8WYN3 585 aa19.48■□□□□ 0.71
PTPRN2-202ENST00000389416 RSF1Q96T23 1441 aaPredicted RBP19.4■□□□□ 0.7
PTPRN2-202ENST00000389416 P3H3Q8IVL6 736 aa19.38■□□□□ 0.69
PTPRN2-202ENST00000389416 FAM50AQ14320 339 aaKnown RBP19.33■□□□□ 0.69
PTPRN2-202ENST00000389416 DCAF1Q9Y4B6 1507 aa19.32■□□□□ 0.68
PTPRN2-202ENST00000389416 ARID3CA6NKF2 412 aa19.28■□□□□ 0.68
PTPRN2-202ENST00000389416 CECR2Q9BXF3 1484 aa19.25■□□□□ 0.67
PTPRN2-202ENST00000389416 HRCP23327 699 aa19.2■□□□□ 0.66
PTPRN2-202ENST00000389416 BAZ1BQ9UIG0 1483 aaKnown RBP19.16■□□□□ 0.66
PTPRN2-202ENST00000389416 POLR3GLQ9BT43 218 aa19.12■□□□□ 0.65
PTPRN2-202ENST00000389416 PELP1Q8IZL8 1130 aaKnown RBP19.11■□□□□ 0.65
PTPRN2-202ENST00000389416 YTHDC1Q96MU7 727 aaKnown RBP19.1■□□□□ 0.65
PTPRN2-202ENST00000389416 CENPBP07199 599 aaPredicted RBP19.09■□□□□ 0.65
PTPRN2-202ENST00000389416 TRIM52Q96A61 297 aa19.09■□□□□ 0.65
PTPRN2-202ENST00000389416 BAZ1AQ9NRL2 1556 aaPredicted RBP19.08■□□□□ 0.64
PTPRN2-202ENST00000389416 CNGB1Q14028 1251 aaPredicted RBP18.98■□□□□ 0.63
PTPRN2-202ENST00000389416 NEUROD1Q13562 356 aa18.97■□□□□ 0.63
PTPRN2-202ENST00000389416 ZNF777Q9ULD5 760 aaPredicted RBP18.95■□□□□ 0.62
PTPRN2-202ENST00000389416 WRNQ14191 1432 aaPredicted RBP eCLIP18.95■□□□□ 0.62
PTPRN2-202ENST00000389416 MROH2BQ7Z745 1585 aa18.95■□□□□ 0.62
PTPRN2-202ENST00000389416 CHMP7Q8WUX9 453 aaPredicted RBP18.94■□□□□ 0.62
PTPRN2-202ENST00000389416 CDK11AQ9UQ88 783 aaPredicted RBP18.91■□□□□ 0.62
PTPRN2-202ENST00000389416 MYO15BQ96JP2 1530 aa18.87■□□□□ 0.61
PTPRN2-202ENST00000389416 ZNF326Q5BKZ1 582 aaKnown RBP18.8■□□□□ 0.6
PTPRN2-202ENST00000389416 CLIP1P30622 1438 aa18.75■□□□□ 0.59
PTPRN2-202ENST00000389416 NPM1P06748 294 aaKnown RBP eCLIP18.75■□□□□ 0.59
PTPRN2-202ENST00000389416 SLC4A1APQ9BWU0 796 aaKnown RBP18.75■□□□□ 0.59
PTPRN2-202ENST00000389416 ERCC6Q03468 1493 aa18.75■□□□□ 0.59
PTPRN2-202ENST00000389416 CCDC88BA6NC98 1476 aa18.74■□□□□ 0.59
PTPRN2-202ENST00000389416 NEFLP07196 543 aa18.73■□□□□ 0.59
PTPRN2-202ENST00000389416 KIF27Q86VH2 1401 aa18.72■□□□□ 0.59
PTPRN2-202ENST00000389416 EEA1Q15075 1411 aa18.72■□□□□ 0.59
PTPRN2-202ENST00000389416 DIEXFQ68CQ4 756 aaKnown RBP18.67■□□□□ 0.58
PTPRN2-202ENST00000389416 SMARCA2P51531 1590 aa18.67■□□□□ 0.58
PTPRN2-202ENST00000389416 CHIC2Q9UKJ5 165 aa18.66■□□□□ 0.58
PTPRN2-202ENST00000389416 GOLGA3Q08378 1498 aa18.65■□□□□ 0.58
PTPRN2-202ENST00000389416 MTUS2Q5JR59 1369 aa18.64■□□□□ 0.57
PTPRN2-202ENST00000389416 WIZO95785 1651 aa18.63■□□□□ 0.57
PTPRN2-202ENST00000389416 CEP162Q5TB80 1403 aa18.62■□□□□ 0.57
PTPRN2-202ENST00000389416 SOGA1O94964 1423 aa18.61■□□□□ 0.57
PTPRN2-202ENST00000389416 ATAD2BQ9ULI0 1458 aa18.57■□□□□ 0.56
PTPRN2-202ENST00000389416 CUX2O14529 1486 aa18.56■□□□□ 0.56
PTPRN2-202ENST00000389416 ABCC8Q09428 1581 aa18.56■□□□□ 0.56
PTPRN2-202ENST00000389416 KCNH8Q96L42 1107 aa18.56■□□□□ 0.56
PTPRN2-202ENST00000389416 CEP164Q9UPV0 1460 aa18.54■□□□□ 0.56
PTPRN2-202ENST00000389416 TNIKQ9UKE5 1360 aa18.53■□□□□ 0.56
PTPRN2-202ENST00000389416 CARMIL1Q5VZK9 1371 aa18.5■□□□□ 0.55
PTPRN2-202ENST00000389416 TOP2AP11388 1531 aaKnown RBP18.5■□□□□ 0.55
PTPRN2-202ENST00000389416 TSPY4P0CV99 314 aa18.5■□□□□ 0.55
PTPRN2-202ENST00000389416 TSPY10P0CW01 314 aa18.5■□□□□ 0.55
PTPRN2-202ENST00000389416 PDS5BQ9NTI5 1447 aa18.5■□□□□ 0.55
PTPRN2-202ENST00000389416 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.49■□□□□ 0.554e-7■■■□□ 15.2
PTPRN2-202ENST00000389416 CADPSQ9ULU8 1353 aa18.49■□□□□ 0.55
PTPRN2-202ENST00000389416 PLEKHD1A6NEE1 506 aa18.49■□□□□ 0.55
PTPRN2-202ENST00000389416 BCANQ96GW7 911 aa18.47■□□□□ 0.55
PTPRN2-202ENST00000389416 TDRD9Q8NDG6 1382 aaKnown RBP18.47■□□□□ 0.55
PTPRN2-202ENST00000389416 SMARCA4P51532 1647 aa18.47■□□□□ 0.55
PTPRN2-202ENST00000389416 ESF1Q9H501 851 aaKnown RBP18.46■□□□□ 0.55
PTPRN2-202ENST00000389416 PLPPR3Q6T4P5 718 aa18.45■□□□□ 0.54
PTPRN2-202ENST00000389416 CHGAP10645 457 aaKnown RBP18.44■□□□□ 0.54
PTPRN2-202ENST00000389416 ZNF316A6NFI3 1004 aaPredicted RBP18.44■□□□□ 0.54
PTPRN2-202ENST00000389416 RRP7BPQ9NSQ0 103 aa18.41■□□□□ 0.54
PTPRN2-202ENST00000389416 TONSLQ96HA7 1378 aa18.38■□□□□ 0.53
PTPRN2-202ENST00000389416 ANP32CO43423 234 aa18.36■□□□□ 0.53
PTPRN2-202ENST00000389416 STAG3Q9UJ98 1225 aa18.34■□□□□ 0.53
PTPRN2-202ENST00000389416 CFDP1Q9UEE9 299 aaPredicted RBP18.34■□□□□ 0.53
PTPRN2-202ENST00000389416 EIF4G1Q04637 1599 aaKnown RBP18.33■□□□□ 0.52
PTPRN2-202ENST00000389416 MYT1Q01538 1121 aa18.32■□□□□ 0.52
PTPRN2-202ENST00000389416 ERICH6Q7L0X2 663 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms