RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 CNTLNQ9NXG0 1405 aa25.43■■□□□ 1.66
CCDC3-201ENST00000378825 SENP3-EIF4A1A0A087X0R7 540 aa25.43■■□□□ 1.66
CCDC3-201ENST00000378825 THOC2Q8NI27 1593 aaKnown RBP25.41■■□□□ 1.66
CCDC3-201ENST00000378825 UGGT2Q9NYU1 1516 aa25.41■■□□□ 1.66
CCDC3-201ENST00000378825 EPRSP07814 1512 aaKnown RBP25.4■■□□□ 1.66
CCDC3-201ENST00000378825 MPHOSPH9Q99550 1183 aa25.38■■□□□ 1.65
CCDC3-201ENST00000378825 NBPF8Q3BBV2 869 aa25.38■■□□□ 1.65
CCDC3-201ENST00000378825 CCDC7Q96M83 1385 aa25.37■■□□□ 1.65
CCDC3-201ENST00000378825 HECW1Q76N89 1606 aa25.35■■□□□ 1.65
CCDC3-201ENST00000378825 ARHGEF11O15085 1522 aa25.34■■□□□ 1.65
CCDC3-201ENST00000378825 IFT140Q96RY7 1462 aa25.32■■□□□ 1.64
CCDC3-201ENST00000378825 NCOA1Q15788 1441 aa25.32■■□□□ 1.64
CCDC3-201ENST00000378825 FBLN2P98095 1184 aa25.3■■□□□ 1.64
CCDC3-201ENST00000378825 ZBED9Q6R2W3 1325 aa25.3■■□□□ 1.64
CCDC3-201ENST00000378825 WDR62O43379 1518 aa25.29■■□□□ 1.64
CCDC3-201ENST00000378825 ERICH6BQ5W0A0 696 aa25.28■■□□□ 1.64
CCDC3-201ENST00000378825 KIF7Q2M1P5 1343 aa25.28■■□□□ 1.64
CCDC3-201ENST00000378825 ZNF644Q9H582 1327 aaPredicted RBP25.26■■□□□ 1.63
CCDC3-201ENST00000378825 PAK3O75914 559 aaPredicted RBP25.26■■□□□ 1.63
CCDC3-201ENST00000378825 AKNAQ7Z591 1439 aa25.26■■□□□ 1.63
CCDC3-201ENST00000378825 GCC2Q8IWJ2 1684 aa25.25■■□□□ 1.63
CCDC3-201ENST00000378825 ERCC6Q03468 1493 aa25.24■■□□□ 1.63
CCDC3-201ENST00000378825 DISP1Q96F81 1524 aa25.24■■□□□ 1.63
CCDC3-201ENST00000378825 TCOF1Q13428 1488 aaKnown RBP25.23■■□□□ 1.63
CCDC3-201ENST00000378825 POLR3GLQ9BT43 218 aa25.22■■□□□ 1.63
CCDC3-201ENST00000378825 KIAA0586Q9BVV6 1533 aa25.22■■□□□ 1.63
CCDC3-201ENST00000378825 NBR1Q14596 966 aa25.21■■□□□ 1.63
CCDC3-201ENST00000378825 CHMP7Q8WUX9 453 aaPredicted RBP25.21■■□□□ 1.63
CCDC3-201ENST00000378825 DEKP35659 375 aaKnown RBP25.2■■□□□ 1.62
CCDC3-201ENST00000378825 GRIN2AQ12879 1464 aa25.2■■□□□ 1.62
CCDC3-201ENST00000378825 EIF4G3O43432 1585 aaKnown RBP25.19■■□□□ 1.62
CCDC3-201ENST00000378825 KIAA0556O60303 1618 aa25.18■■□□□ 1.62
CCDC3-201ENST00000378825 ANKRD30BQ9BXX2 1392 aa25.17■■□□□ 1.62
CCDC3-201ENST00000378825 NUP153P49790 1475 aaKnown RBP25.17■■□□□ 1.62
CCDC3-201ENST00000378825 MIA2Q96PC5 1412 aa25.16■■□□□ 1.62
CCDC3-201ENST00000378825 SPATA31E1Q6ZUB1 1445 aa25.15■■□□□ 1.62
CCDC3-201ENST00000378825 TEX14Q8IWB6 1497 aa25.14■■□□□ 1.62
CCDC3-201ENST00000378825 NOP58Q9Y2X3 529 aaKnown RBP25.13■■□□□ 1.61
CCDC3-201ENST00000378825 ZNF326Q5BKZ1 582 aaKnown RBP25.13■■□□□ 1.61
CCDC3-201ENST00000378825 SLC4A1APQ9BWU0 796 aaKnown RBP25.13■■□□□ 1.61
CCDC3-201ENST00000378825 RPRD2Q5VT52 1461 aaKnown RBP25.12■■□□□ 1.61
CCDC3-201ENST00000378825 PRG4Q92954 1404 aaPredicted RBP25.11■■□□□ 1.61
CCDC3-201ENST00000378825 ZNF777Q9ULD5 760 aaPredicted RBP25.1■■□□□ 1.61
CCDC3-201ENST00000378825 PLB1Q6P1J6 1458 aa25.09■■□□□ 1.61
CCDC3-201ENST00000378825 DAPK1P53355 1430 aa25.08■■□□□ 1.61
CCDC3-201ENST00000378825 DHX29Q7Z478 1369 aaKnown RBP25.07■■□□□ 1.6
CCDC3-201ENST00000378825 ABCC5O15440 1437 aa25.07■■□□□ 1.6
CCDC3-201ENST00000378825 RAPGEF6Q8TEU7 1601 aa25.07■■□□□ 1.6
CCDC3-201ENST00000378825 CCDC136Q96JN2 1154 aa25.06■■□□□ 1.6
CCDC3-201ENST00000378825 SMG6Q86US8 1419 aaKnown RBP25.04■■□□□ 1.6
CCDC3-201ENST00000378825 NUDCQ9Y266 331 aa25.04■■□□□ 1.6
CCDC3-201ENST00000378825 CEP170Q5SW79 1584 aa25.04■■□□□ 1.6
CCDC3-201ENST00000378825 JPH4Q96JJ6 628 aa25.03■■□□□ 1.6
CCDC3-201ENST00000378825 CFDP1Q9UEE9 299 aaPredicted RBP25.03■■□□□ 1.6
CCDC3-201ENST00000378825 BCORL1Q5H9F3 1711 aa25■■□□□ 1.59
CCDC3-201ENST00000378825 SYNJ2O15056 1496 aa24.99■■□□□ 1.59
CCDC3-201ENST00000378825 MAGI1Q96QZ7 1491 aaPredicted RBP24.99■■□□□ 1.59
CCDC3-201ENST00000378825 TROQ12816 1431 aaPredicted RBP24.96■■□□□ 1.59
CCDC3-201ENST00000378825 RNF123Q5XPI4 1314 aa24.96■■□□□ 1.59
CCDC3-201ENST00000378825 USP47Q96K76 1375 aa24.96■■□□□ 1.59
CCDC3-201ENST00000378825 POLR1AO95602 1720 aaPredicted RBP24.95■■□□□ 1.58
CCDC3-201ENST00000378825 DNMT1P26358 1616 aaKnown RBP24.95■■□□□ 1.58
CCDC3-201ENST00000378825 ROCK1Q13464 1354 aa24.94■■□□□ 1.58
CCDC3-201ENST00000378825 PNISRQ8TF01 805 aaKnown RBP24.92■■□□□ 1.58
CCDC3-201ENST00000378825 KIF14Q15058 1648 aa24.92■■□□□ 1.58
CCDC3-201ENST00000378825 PZPP20742 1482 aa24.91■■□□□ 1.58
CCDC3-201ENST00000378825 CAMSAP2Q08AD1 1489 aa24.91■■□□□ 1.58
CCDC3-201ENST00000378825 IPO9Q96P70 1041 aaKnown RBP24.91■■□□□ 1.58
CCDC3-201ENST00000378825 SALL2Q9Y467 1007 aaPredicted RBP24.91■■□□□ 1.58
CCDC3-201ENST00000378825 MYT1LQ9UL68 1186 aa24.9■■□□□ 1.58
CCDC3-201ENST00000378825 ANP32AP39687 249 aaKnown RBP24.9■■□□□ 1.58
CCDC3-201ENST00000378825 CARMIL2Q6F5E8 1435 aa24.9■■□□□ 1.58
CCDC3-201ENST00000378825 GPATCH8Q9UKJ3 1502 aaKnown RBP24.9■■□□□ 1.58
CCDC3-201ENST00000378825 TMC1Q8TDI8 760 aa24.89■■□□□ 1.58
CCDC3-201ENST00000378825 NPM2Q86SE8 214 aaKnown RBP24.86■■□□□ 1.57
CCDC3-201ENST00000378825 PKD2Q13563 968 aa24.86■■□□□ 1.57
CCDC3-201ENST00000378825 NUP160Q12769 1436 aa24.86■■□□□ 1.57
CCDC3-201ENST00000378825 PLEKHD1A6NEE1 506 aa24.85■■□□□ 1.57
CCDC3-201ENST00000378825 MBD5Q9P267 1494 aa24.84■■□□□ 1.57
CCDC3-201ENST00000378825 ZBTB47Q9UFB7 747 aaPredicted RBP24.84■■□□□ 1.57
CCDC3-201ENST00000378825 EXOC6Q8TAG9 804 aa24.83■■□□□ 1.56
CCDC3-201ENST00000378825 KDM2AQ9Y2K7 1162 aa24.8■■□□□ 1.56
CCDC3-201ENST00000378825 KDM5CP41229 1560 aa24.78■■□□□ 1.56
CCDC3-201ENST00000378825 SKAP1Q86WV1 359 aa24.77■■□□□ 1.56
CCDC3-201ENST00000378825 CARD11Q9BXL7 1154 aa24.77■■□□□ 1.56
CCDC3-201ENST00000378825 KIAA1107Q9UPP5 1409 aa24.77■■□□□ 1.56
CCDC3-201ENST00000378825 ATP10BO94823 1461 aa24.76■■□□□ 1.55
CCDC3-201ENST00000378825 ST20-MTHFSA0A0A6YYL1 179 aa24.76■■□□□ 1.55
CCDC3-201ENST00000378825 RRP1P56182 461 aaKnown RBP24.74■■□□□ 1.55
CCDC3-201ENST00000378825 ITSN2Q9NZM3 1697 aa24.74■■□□□ 1.55
CCDC3-201ENST00000378825 HNRNPMP52272 730 aaKnown RBP eCLIP24.74■■□□□ 1.55
CCDC3-201ENST00000378825 RTL5Q5HYW3 569 aaPredicted RBP24.73■■□□□ 1.55
CCDC3-201ENST00000378825 ANKRD30AQ9BXX3 1397 aa24.73■■□□□ 1.55
CCDC3-201ENST00000378825 LAS1LQ9Y4W2 734 aaKnown RBP24.73■■□□□ 1.55
CCDC3-201ENST00000378825 LRPPRCP42704 1394 aaKnown RBP24.71■■□□□ 1.55
CCDC3-201ENST00000378825 ANKRD50Q9ULJ7 1429 aa24.7■■□□□ 1.54
CCDC3-201ENST00000378825 ABCA8O94911 1581 aa24.7■■□□□ 1.54
CCDC3-201ENST00000378825 CDCA7LQ96GN5 454 aa24.69■■□□□ 1.54
CCDC3-201ENST00000378825 ADCY10Q96PN6 1610 aa24.69■■□□□ 1.54
CCDC3-201ENST00000378825 RCAN3Q9UKA8 241 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms