RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 PREX2Q70Z35 1606 aa19.36■□□□□ 0.69
VRK3-202ENST00000377011 ADGRL1O94910 1474 aa19.35■□□□□ 0.69
VRK3-202ENST00000377011 DENND4BO75064 1496 aaPredicted RBP19.35■□□□□ 0.69
VRK3-202ENST00000377011 CFAP74Q9C0B2 1584 aa19.34■□□□□ 0.69
VRK3-202ENST00000377011 SCAPERQ9BY12 1400 aa19.34■□□□□ 0.69
VRK3-202ENST00000377011 ARHGEF12Q9NZN5 1544 aa19.34■□□□□ 0.69
VRK3-202ENST00000377011 TIAM1Q13009 1591 aa19.33■□□□□ 0.69
VRK3-202ENST00000377011 GPATCH8Q9UKJ3 1502 aaKnown RBP19.33■□□□□ 0.68
VRK3-202ENST00000377011 MTUS2Q5JR59 1369 aa19.33■□□□□ 0.68
VRK3-202ENST00000377011 EFCAB2Q5VUJ9 269 aa19.32■□□□□ 0.68
VRK3-202ENST00000377011 KANK4Q5T7N3 995 aaPredicted RBP19.31■□□□□ 0.68
VRK3-202ENST00000377011 SIGLEC1Q9BZZ2 1709 aa19.31■□□□□ 0.68
VRK3-202ENST00000377011 YEATS2Q9ULM3 1422 aa19.3■□□□□ 0.68
VRK3-202ENST00000377011 POGZQ7Z3K3 1410 aa19.3■□□□□ 0.68
VRK3-202ENST00000377011 EHBP1L1Q8N3D4 1523 aa19.29■□□□□ 0.68
VRK3-202ENST00000377011 AFAP1Q8N556 730 aa19.28■□□□□ 0.68
VRK3-202ENST00000377011 SAMD9LQ8IVG5 1584 aa19.28■□□□□ 0.68
VRK3-202ENST00000377011 TRIM26Q12899 539 aaPredicted RBP19.27■□□□□ 0.68
VRK3-202ENST00000377011 TRAPPC8Q9Y2L5 1435 aa19.26■□□□□ 0.67
VRK3-202ENST00000377011 ABCC1P33527 1531 aa19.26■□□□□ 0.67
VRK3-202ENST00000377011 ZNF777Q9ULD5 760 aaPredicted RBP19.26■□□□□ 0.67
VRK3-202ENST00000377011 ZMYM4Q5VZL5 1548 aa19.26■□□□□ 0.67
VRK3-202ENST00000377011 ZNF644Q9H582 1327 aaPredicted RBP19.25■□□□□ 0.67
VRK3-202ENST00000377011 LRRC9Q6ZRR7 1453 aa19.24■□□□□ 0.67
VRK3-202ENST00000377011 ARHGEF40Q8TER5 1519 aa19.24■□□□□ 0.67
VRK3-202ENST00000377011 NCOA2Q15596 1464 aa19.24■□□□□ 0.67
VRK3-202ENST00000377011 ITSN2Q9NZM3 1697 aa19.24■□□□□ 0.67
VRK3-202ENST00000377011 CCNB3Q8WWL7 1395 aa19.23■□□□□ 0.67
VRK3-202ENST00000377011 KDM5CP41229 1560 aa19.21■□□□□ 0.67
VRK3-202ENST00000377011 ZFYVE16Q7Z3T8 1539 aa19.21■□□□□ 0.67
VRK3-202ENST00000377011 SYCP2Q9BX26 1530 aa19.21■□□□□ 0.67
VRK3-202ENST00000377011 SUPT6HQ7KZ85 1726 aaKnown RBP19.2■□□□□ 0.66
VRK3-202ENST00000377011 HNRNPMP52272 730 aaKnown RBP eCLIP19.2■□□□□ 0.66
VRK3-202ENST00000377011 CFDP1Q9UEE9 299 aaPredicted RBP19.2■□□□□ 0.66
VRK3-202ENST00000377011 ZNF518AQ6AHZ1 1483 aa19.18■□□□□ 0.66
VRK3-202ENST00000377011 MAP3K1Q13233 1512 aa19.18■□□□□ 0.66
VRK3-202ENST00000377011 ABCA6Q8N139 1617 aa19.15■□□□□ 0.66
VRK3-202ENST00000377011 MAGI2Q86UL8 1455 aa19.14■□□□□ 0.65
VRK3-202ENST00000377011 HECW2Q9P2P5 1572 aa19.14■□□□□ 0.65
VRK3-202ENST00000377011 KIDINS220Q9ULH0 1771 aa19.14■□□□□ 0.65
VRK3-202ENST00000377011 DIP2CQ9Y2E4 1556 aa19.14■□□□□ 0.65
VRK3-202ENST00000377011 BCORL1Q5H9F3 1711 aa19.13■□□□□ 0.65
VRK3-202ENST00000377011 ADAMTSL3P82987 1691 aa19.13■□□□□ 0.65
VRK3-202ENST00000377011 ARID4BQ4LE39 1312 aaPredicted RBP19.13■□□□□ 0.65
VRK3-202ENST00000377011 MBD5Q9P267 1494 aa19.12■□□□□ 0.65
VRK3-202ENST00000377011 MLH3Q9UHC1 1453 aa19.11■□□□□ 0.65
VRK3-202ENST00000377011 ATP10AO60312 1499 aa19.1■□□□□ 0.65
VRK3-202ENST00000377011 MLECQ14165 292 aa19.1■□□□□ 0.65
VRK3-202ENST00000377011 KIAA1107Q9UPP5 1409 aa19.1■□□□□ 0.65
VRK3-202ENST00000377011 MADDQ8WXG6 1647 aa19.1■□□□□ 0.65
VRK3-202ENST00000377011 MYT1LQ9UL68 1186 aa19.09■□□□□ 0.65
VRK3-202ENST00000377011 CAMSAP2Q08AD1 1489 aa19.09■□□□□ 0.65
VRK3-202ENST00000377011 C9orf84Q5VXU9 1444 aa19.07■□□□□ 0.64
VRK3-202ENST00000377011 PLEKHH2Q8IVE3 1493 aa19.05■□□□□ 0.64
VRK3-202ENST00000377011 INO80Q9ULG1 1556 aaPredicted RBP19.05■□□□□ 0.64
VRK3-202ENST00000377011 PPARGC1BQ86YN6 1023 aaKnown RBP19.04■□□□□ 0.64
VRK3-202ENST00000377011 SPAG9O60271 1321 aaKnown RBP19.04■□□□□ 0.64
VRK3-202ENST00000377011 MYOM3Q5VTT5 1437 aa19.04■□□□□ 0.64
VRK3-202ENST00000377011 ATP7AQ04656 1500 aa19.03■□□□□ 0.64
VRK3-202ENST00000377011 APLP2Q06481 763 aa19.03■□□□□ 0.64
VRK3-202ENST00000377011 RIMS1Q86UR5 1692 aaKnown RBP19.03■□□□□ 0.64
VRK3-202ENST00000377011 PTPRMP28827 1452 aa19.02■□□□□ 0.64
VRK3-202ENST00000377011 REREQ9P2R6 1566 aa19■□□□□ 0.63
VRK3-202ENST00000377011 ZEB1P37275 1124 aaPredicted RBP18.99■□□□□ 0.63
VRK3-202ENST00000377011 PLPPR3Q6T4P5 718 aa18.99■□□□□ 0.63
VRK3-202ENST00000377011 CCDC141Q6ZP82 1450 aa18.98■□□□□ 0.63
VRK3-202ENST00000377011 FER1L4A9Z1Z3 1794 aa18.97■□□□□ 0.63
VRK3-202ENST00000377011 ARHGEF5Q12774 1597 aa18.96■□□□□ 0.63
VRK3-202ENST00000377011 MIA2Q96PC5 1412 aa18.96■□□□□ 0.63
VRK3-202ENST00000377011 PLXNC1O60486 1568 aa18.96■□□□□ 0.63
VRK3-202ENST00000377011 ADGBQ8N7X0 1667 aa18.95■□□□□ 0.62
VRK3-202ENST00000377011 PTPN23Q9H3S7 1636 aa18.95■□□□□ 0.62
VRK3-202ENST00000377011 AGLP35573 1532 aa18.95■□□□□ 0.62
VRK3-202ENST00000377011 FGD6Q6ZV73 1430 aa18.94■□□□□ 0.62
VRK3-202ENST00000377011 A2MP01023 1474 aa18.94■□□□□ 0.62
VRK3-202ENST00000377011 CEBPAP49715 358 aaPredicted RBP18.93■□□□□ 0.62
VRK3-202ENST00000377011 RTEL1-TNFRSF6BF6WH68 1400 aa18.91■□□□□ 0.62
VRK3-202ENST00000377011 ABCC5O15440 1437 aa18.9■□□□□ 0.62
VRK3-202ENST00000377011 TCOF1Q13428 1488 aaKnown RBP18.89■□□□□ 0.61
VRK3-202ENST00000377011 MAST1Q9Y2H9 1570 aa18.86■□□□□ 0.61
VRK3-202ENST00000377011 CROCC2H7BZ55 1655 aa18.86■□□□□ 0.61
VRK3-202ENST00000377011 DHX29Q7Z478 1369 aaKnown RBP18.85■□□□□ 0.61
VRK3-202ENST00000377011 TSPY4P0CV99 314 aa18.85■□□□□ 0.61
VRK3-202ENST00000377011 TSPY10P0CW01 314 aa18.85■□□□□ 0.61
VRK3-202ENST00000377011 RSPH4AQ5TD94 716 aa18.85■□□□□ 0.61
VRK3-202ENST00000377011 GGT6Q6P531 493 aa18.85■□□□□ 0.61
VRK3-202ENST00000377011 DNMT1P26358 1616 aaKnown RBP18.84■□□□□ 0.61
VRK3-202ENST00000377011 DAPK1P53355 1430 aa18.84■□□□□ 0.61
VRK3-202ENST00000377011 C3P01024 1663 aa18.84■□□□□ 0.61
VRK3-202ENST00000377011 CLTCQ00610 1675 aaKnown RBP18.82■□□□□ 0.6
VRK3-202ENST00000377011 CHIC2Q9UKJ5 165 aa18.82■□□□□ 0.6
VRK3-202ENST00000377011 FAM50AQ14320 339 aaKnown RBP18.81■□□□□ 0.6
VRK3-202ENST00000377011 LMTK3Q96Q04 1460 aa18.81■□□□□ 0.6
VRK3-202ENST00000377011 PTPRKQ15262 1439 aa18.81■□□□□ 0.6
VRK3-202ENST00000377011 KIF3BO15066 747 aa18.8■□□□□ 0.6
VRK3-202ENST00000377011 RRP7BPQ9NSQ0 103 aa18.78■□□□□ 0.6
VRK3-202ENST00000377011 HSPA2P54652 639 aa18.77■□□□□ 0.6
VRK3-202ENST00000377011 SHANK2Q9UPX8 1470 aa18.77■□□□□ 0.6
VRK3-202ENST00000377011 ZMYM3Q14202 1370 aa18.75■□□□□ 0.59
VRK3-202ENST00000377011 MROH1Q8NDA8 1641 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms