RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 NISCHQ9Y2I1 1504 aa29.75■■■□□ 2.35
VRK3-202ENST00000377011 CCDC180Q9P1Z9 1646 aa26.38■■□□□ 1.81
VRK3-202ENST00000377011 ABCC9O60706 1549 aa26.05■■□□□ 1.76
VRK3-202ENST00000377011 DCAF8L2P0C7V8 631 aa24.94■■□□□ 1.58
VRK3-202ENST00000377011 RB1CC1Q8TDY2 1594 aa24.87■■□□□ 1.57
VRK3-202ENST00000377011 NACADO15069 1562 aa24.81■■□□□ 1.56
VRK3-202ENST00000377011 ZCCHC6Q5VYS8 1495 aaKnown RBP24.77■■□□□ 1.56
VRK3-202ENST00000377011 MYO15BQ96JP2 1530 aa24.6■■□□□ 1.53
VRK3-202ENST00000377011 DCAF1Q9Y4B6 1507 aa24.51■■□□□ 1.51
VRK3-202ENST00000377011 UNC13AQ9UPW8 1703 aa24.48■■□□□ 1.51
VRK3-202ENST00000377011 PABPN1Q86U42 306 aaKnown RBP eCLIP24.38■■□□□ 1.49
VRK3-202ENST00000377011 BICRAQ9NZM4 1560 aa24.29■■□□□ 1.48
VRK3-202ENST00000377011 SCRIBQ14160 1630 aa24.22■■□□□ 1.47
VRK3-202ENST00000377011 DNAJC5BQ9UF47 199 aa24.1■■□□□ 1.45
VRK3-202ENST00000377011 SHROOM4Q9ULL8 1493 aa23.74■■□□□ 1.39
VRK3-202ENST00000377011 EIF4G1Q04637 1599 aaKnown RBP23.58■■□□□ 1.37
VRK3-202ENST00000377011 CC2D2AQ9P2K1 1620 aa23.52■■□□□ 1.36
VRK3-202ENST00000377011 CECR2Q9BXF3 1484 aa23.34■■□□□ 1.33
VRK3-202ENST00000377011 SMARCA4P51532 1647 aa23.1■■□□□ 1.29
VRK3-202ENST00000377011 MROH2BQ7Z745 1585 aa23.01■■□□□ 1.27
VRK3-202ENST00000377011 ATAD2BQ9ULI0 1458 aa23■■□□□ 1.27
VRK3-202ENST00000377011 BAZ1AQ9NRL2 1556 aaPredicted RBP22.99■■□□□ 1.27
VRK3-202ENST00000377011 NCAPD3P42695 1498 aa22.94■■□□□ 1.26
VRK3-202ENST00000377011 SMARCA2P51531 1590 aa22.86■■□□□ 1.25
VRK3-202ENST00000377011 PEG3Q9GZU2 1588 aa22.83■■□□□ 1.24
VRK3-202ENST00000377011 HMGXB3Q12766 1538 aa22.8■■□□□ 1.24
VRK3-202ENST00000377011 WIZO95785 1651 aa22.77■■□□□ 1.24
VRK3-202ENST00000377011 BAZ1BQ9UIG0 1483 aaKnown RBP22.76■■□□□ 1.23
VRK3-202ENST00000377011 RSF1Q96T23 1441 aaPredicted RBP22.68■■□□□ 1.22
VRK3-202ENST00000377011 NESP48681 1621 aa22.58■■□□□ 1.2
VRK3-202ENST00000377011 TOP2AP11388 1531 aaKnown RBP22.41■■□□□ 1.18
VRK3-202ENST00000377011 ERCC6Q03468 1493 aa22.34■■□□□ 1.17
VRK3-202ENST00000377011 LAMC3Q9Y6N6 1575 aa22.31■■□□□ 1.16
VRK3-202ENST00000377011 CADPSQ9ULU8 1353 aa22.28■■□□□ 1.16
VRK3-202ENST00000377011 KIF21AQ7Z4S6 1674 aa22.25■■□□□ 1.15
VRK3-202ENST00000377011 CCDC88BA6NC98 1476 aa22.21■■□□□ 1.15
VRK3-202ENST00000377011 THOC2Q8NI27 1593 aaKnown RBP22.16■■□□□ 1.14
VRK3-202ENST00000377011 CFTRP13569 1480 aa22.14■■□□□ 1.14
VRK3-202ENST00000377011 PDS5BQ9NTI5 1447 aa22.14■■□□□ 1.13
VRK3-202ENST00000377011 SUPT5HO00267 1087 aaKnown RBP22.1■■□□□ 1.13
VRK3-202ENST00000377011 CUX2O14529 1486 aa22.07■■□□□ 1.12
VRK3-202ENST00000377011 FANCD2Q9BXW9 1451 aa22.05■■□□□ 1.12
VRK3-202ENST00000377011 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
VRK3-202ENST00000377011 MRC2Q9UBG0 1479 aa21.98■■□□□ 1.11
VRK3-202ENST00000377011 PRDM2Q13029 1718 aa21.95■■□□□ 1.1
VRK3-202ENST00000377011 WDR62O43379 1518 aa21.93■■□□□ 1.1
VRK3-202ENST00000377011 URB2Q14146 1524 aaKnown RBP21.9■■□□□ 1.1
VRK3-202ENST00000377011 TOPBP1Q92547 1522 aa21.71■■□□□ 1.07
VRK3-202ENST00000377011 DNMBPQ6XZF7 1577 aa21.63■■□□□ 1.05
VRK3-202ENST00000377011 ZNF608Q9ULD9 1512 aaPredicted RBP21.59■■□□□ 1.05
VRK3-202ENST00000377011 DNAJC5Q9H3Z4 198 aa21.57■■□□□ 1.04
VRK3-202ENST00000377011 CUX1P39880 1505 aa21.57■■□□□ 1.04
VRK3-202ENST00000377011 ABCC8Q09428 1581 aa21.53■■□□□ 1.04
VRK3-202ENST00000377011 POLA1P09884 1462 aaPredicted RBP21.53■■□□□ 1.04
VRK3-202ENST00000377011 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
VRK3-202ENST00000377011 RAD54L2Q9Y4B4 1467 aa21.51■■□□□ 1.03
VRK3-202ENST00000377011 TARBP1Q13395 1621 aaKnown RBP21.5■■□□□ 1.03
VRK3-202ENST00000377011 FGD5Q6ZNL6 1462 aa21.47■■□□□ 1.03
VRK3-202ENST00000377011 AEBP2Q6ZN18 517 aaPredicted RBP21.46■■□□□ 1.03
VRK3-202ENST00000377011 AQRO60306 1485 aaKnown RBP eCLIP21.43■■□□□ 1.025e-7■■■■■ 54.7
VRK3-202ENST00000377011 EIF4G3O43432 1585 aaKnown RBP21.42■■□□□ 1.02
VRK3-202ENST00000377011 SOGA1O94964 1423 aa21.41■■□□□ 1.02
VRK3-202ENST00000377011 SYNJ1O43426 1573 aa21.38■■□□□ 1.01
VRK3-202ENST00000377011 TDRD9Q8NDG6 1382 aaKnown RBP21.37■■□□□ 1.01
VRK3-202ENST00000377011 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1
VRK3-202ENST00000377011 WDR97A6NE52 1622 aa21.3■■□□□ 1
VRK3-202ENST00000377011 BIVM-ERCC5R4GMW8 1640 aa21.3■■□□□ 1
VRK3-202ENST00000377011 TOP2BQ02880 1626 aa21.3■■□□□ 1
VRK3-202ENST00000377011 ABCA10Q8WWZ4 1543 aa21.21■□□□□ 0.99
VRK3-202ENST00000377011 CHD1O14646 1710 aa21.19■□□□□ 0.98
VRK3-202ENST00000377011 OSCARQ8IYS5 282 aa21.18■□□□□ 0.98
VRK3-202ENST00000377011 SNAPC4Q5SXM2 1469 aa21.18■□□□□ 0.98
VRK3-202ENST00000377011 ABCA5Q8WWZ7 1642 aa21.17■□□□□ 0.98
VRK3-202ENST00000377011 GAPVD1Q14C86 1478 aa21.15■□□□□ 0.98
VRK3-202ENST00000377011 PBRM1Q86U86 1689 aa21.14■□□□□ 0.98
VRK3-202ENST00000377011 FBLN2P98095 1184 aa21.12■□□□□ 0.97
VRK3-202ENST00000377011 GRIN2BQ13224 1484 aa21.12■□□□□ 0.97
VRK3-202ENST00000377011 MAGI1Q96QZ7 1491 aaPredicted RBP21.05■□□□□ 0.96
VRK3-202ENST00000377011 SYNJ2O15056 1496 aa21■□□□□ 0.95
VRK3-202ENST00000377011 CHMP7Q8WUX9 453 aaPredicted RBP20.99■□□□□ 0.95
VRK3-202ENST00000377011 ADAMTS12P58397 1594 aa20.97■□□□□ 0.95
VRK3-202ENST00000377011 RIMBP3CA6NJZ7 1639 aa20.95■□□□□ 0.94
VRK3-202ENST00000377011 RIMBP3BA6NNM3 1639 aa20.95■□□□□ 0.94
VRK3-202ENST00000377011 RIMBP3Q9UFD9 1639 aa20.95■□□□□ 0.94
VRK3-202ENST00000377011 CLASP1Q7Z460 1538 aa20.92■□□□□ 0.94
VRK3-202ENST00000377011 ARHGEF11O15085 1522 aa20.92■□□□□ 0.94
VRK3-202ENST00000377011 ERICH3Q5RHP9 1530 aa20.91■□□□□ 0.94
VRK3-202ENST00000377011 TRIM41Q8WV44 630 aa20.9■□□□□ 0.94
VRK3-202ENST00000377011 GRIN2AQ12879 1464 aa20.89■□□□□ 0.94
VRK3-202ENST00000377011 FHAD1B1AJZ9 1412 aa20.87■□□□□ 0.93
VRK3-202ENST00000377011 RUSC2Q8N2Y8 1516 aa20.86■□□□□ 0.93
VRK3-202ENST00000377011 CEP170Q5SW79 1584 aa20.86■□□□□ 0.93
VRK3-202ENST00000377011 IGF1RP08069 1367 aa20.86■□□□□ 0.93
VRK3-202ENST00000377011 KIF27Q86VH2 1401 aa20.84■□□□□ 0.93
VRK3-202ENST00000377011 NUP160Q12769 1436 aa20.8■□□□□ 0.92
VRK3-202ENST00000377011 ARAP1Q96P48 1450 aa20.78■□□□□ 0.92
VRK3-202ENST00000377011 ERCC6L2Q5T890 1561 aa20.77■□□□□ 0.92
VRK3-202ENST00000377011 CYB5RLQ6IPT4 315 aa20.75■□□□□ 0.91
VRK3-202ENST00000377011 CUL7Q14999 1698 aa20.7■□□□□ 0.9
VRK3-202ENST00000377011 CARMIL1Q5VZK9 1371 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms