RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 ZFYVE16Q7Z3T8 1539 aa11.51□□□□□ -0.57
CSDE1-204ENST00000369530 TEX14Q8IWB6 1497 aa11.51□□□□□ -0.57
CSDE1-204ENST00000369530 VWDEQ8N2E2 1590 aa11.51□□□□□ -0.57
CSDE1-204ENST00000369530 CYB5RLQ6IPT4 315 aa11.5□□□□□ -0.57
CSDE1-204ENST00000369530 PHLDB1Q86UU1 1377 aa11.5□□□□□ -0.57
CSDE1-204ENST00000369530 MBD5Q9P267 1494 aa11.5□□□□□ -0.57
CSDE1-204ENST00000369530 PLCH2O75038 1416 aa11.5□□□□□ -0.57
CSDE1-204ENST00000369530 SUPT6HQ7KZ85 1726 aaKnown RBP11.49□□□□□ -0.57
CSDE1-204ENST00000369530 FAM135AQ9P2D6 1515 aa11.49□□□□□ -0.57
CSDE1-204ENST00000369530 TCOF1Q13428 1488 aaKnown RBP11.49□□□□□ -0.57
CSDE1-204ENST00000369530 MAGI2Q86UL8 1455 aa11.48□□□□□ -0.57
CSDE1-204ENST00000369530 TROQ12816 1431 aaPredicted RBP11.47□□□□□ -0.57
CSDE1-204ENST00000369530 CEP162Q5TB80 1403 aa11.47□□□□□ -0.57
CSDE1-204ENST00000369530 MLH3Q9UHC1 1453 aa11.46□□□□□ -0.57
CSDE1-204ENST00000369530 KDM5AP29375 1690 aaKnown RBP11.46□□□□□ -0.57
CSDE1-204ENST00000369530 GPATCH8Q9UKJ3 1502 aaKnown RBP11.46□□□□□ -0.58
CSDE1-204ENST00000369530 C3P01024 1663 aa11.46□□□□□ -0.58
CSDE1-204ENST00000369530 POGZQ7Z3K3 1410 aa11.45□□□□□ -0.58
CSDE1-204ENST00000369530 TRIM41Q8WV44 630 aa11.45□□□□□ -0.58
CSDE1-204ENST00000369530 ZC3H13Q5T200 1668 aaKnown RBP11.44□□□□□ -0.58
CSDE1-204ENST00000369530 STRCQ7RTU9 1775 aa11.44□□□□□ -0.58
CSDE1-204ENST00000369530 DNMT1P26358 1616 aaKnown RBP11.42□□□□□ -0.58
CSDE1-204ENST00000369530 CAMSAP2Q08AD1 1489 aa11.42□□□□□ -0.58
CSDE1-204ENST00000369530 KDM5DQ9BY66 1539 aa11.42□□□□□ -0.58
CSDE1-204ENST00000369530 FBLN2P98095 1184 aa11.41□□□□□ -0.58
CSDE1-204ENST00000369530 MADDQ8WXG6 1647 aa11.41□□□□□ -0.58
CSDE1-204ENST00000369530 KIAA1107Q9UPP5 1409 aa11.4□□□□□ -0.58
CSDE1-204ENST00000369530 CLIP1P30622 1438 aa11.4□□□□□ -0.59
CSDE1-204ENST00000369530 LRRC9Q6ZRR7 1453 aa11.38□□□□□ -0.59
CSDE1-204ENST00000369530 PREX1Q8TCU6 1659 aa11.38□□□□□ -0.59
CSDE1-204ENST00000369530 CD109Q6YHK3 1445 aa11.38□□□□□ -0.59
CSDE1-204ENST00000369530 VPS8Q8N3P4 1428 aa11.38□□□□□ -0.59
CSDE1-204ENST00000369530 UNC13BO14795 1591 aa11.36□□□□□ -0.59
CSDE1-204ENST00000369530 PIK3C2BO00750 1634 aa11.36□□□□□ -0.59
CSDE1-204ENST00000369530 FANCAO15360 1455 aa11.36□□□□□ -0.59
CSDE1-204ENST00000369530 SHANK2Q9UPX8 1470 aa11.35□□□□□ -0.59
CSDE1-204ENST00000369530 PRDM15P57071 1507 aaPredicted RBP11.35□□□□□ -0.59
CSDE1-204ENST00000369530 AKNAQ7Z591 1439 aa11.34□□□□□ -0.59
CSDE1-204ENST00000369530 GCC2Q8IWJ2 1684 aa11.33□□□□□ -0.6
CSDE1-204ENST00000369530 SYCP2Q9BX26 1530 aa11.33□□□□□ -0.6
CSDE1-204ENST00000369530 ADGRL2O95490 1459 aa11.32□□□□□ -0.6
CSDE1-204ENST00000369530 ADGRL1O94910 1474 aa11.32□□□□□ -0.6
CSDE1-204ENST00000369530 LMTK2Q8IWU2 1503 aa11.32□□□□□ -0.6
CSDE1-204ENST00000369530 ATP7AQ04656 1500 aa11.31□□□□□ -0.6
CSDE1-204ENST00000369530 RTEL1-TNFRSF6BF6WH68 1400 aa11.31□□□□□ -0.6
CSDE1-204ENST00000369530 PTPN23Q9H3S7 1636 aa11.31□□□□□ -0.6
CSDE1-204ENST00000369530 RIMS1Q86UR5 1692 aaKnown RBP11.31□□□□□ -0.6
CSDE1-204ENST00000369530 ZNF518AQ6AHZ1 1483 aa11.3□□□□□ -0.6
CSDE1-204ENST00000369530 MYO3AQ8NEV4 1616 aa11.3□□□□□ -0.6
CSDE1-204ENST00000369530 HRCP23327 699 aa11.28□□□□□ -0.6
CSDE1-204ENST00000369530 NCOA2Q15596 1464 aa11.28□□□□□ -0.6
CSDE1-204ENST00000369530 SETD1AO15047 1707 aaKnown RBP11.27□□□□□ -0.6
CSDE1-204ENST00000369530 KDM4FA0A1W2PPD8 638 aa11.27□□□□□ -0.61
CSDE1-204ENST00000369530 CLTCQ00610 1675 aaKnown RBP11.27□□□□□ -0.61
CSDE1-204ENST00000369530 CAMSAP1Q5T5Y3 1602 aa11.27□□□□□ -0.61
CSDE1-204ENST00000369530 YEATS2Q9ULM3 1422 aa11.26□□□□□ -0.61
CSDE1-204ENST00000369530 TRAPPC8Q9Y2L5 1435 aa11.26□□□□□ -0.61
CSDE1-204ENST00000369530 XIRP1Q702N8 1843 aaKnown RBP11.26□□□□□ -0.61
CSDE1-204ENST00000369530 POLR1AO95602 1720 aaPredicted RBP11.26□□□□□ -0.61
CSDE1-204ENST00000369530 LMTK3Q96Q04 1460 aa11.25□□□□□ -0.61
CSDE1-204ENST00000369530 IFT172Q9UG01 1749 aa11.25□□□□□ -0.61
CSDE1-204ENST00000369530 SPATA31D1Q6ZQQ2 1576 aa11.25□□□□□ -0.61
CSDE1-204ENST00000369530 MIA2Q96PC5 1412 aa11.25□□□□□ -0.61
CSDE1-204ENST00000369530 CEP152O94986 1710 aa11.25□□□□□ -0.61
CSDE1-204ENST00000369530 IQGAP3Q86VI3 1631 aa11.24□□□□□ -0.61
CSDE1-204ENST00000369530 DENND4BO75064 1496 aaPredicted RBP11.24□□□□□ -0.61
CSDE1-204ENST00000369530 NEURL4Q96JN8 1562 aa11.23□□□□□ -0.61
CSDE1-204ENST00000369530 UBR1Q8IWV7 1749 aa11.23□□□□□ -0.61
CSDE1-204ENST00000369530 TTBK1Q5TCY1 1321 aaPredicted RBP11.23□□□□□ -0.61
CSDE1-204ENST00000369530 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.22□□□□□ -0.61
CSDE1-204ENST00000369530 STRCP1A6NGW2 1772 aa11.22□□□□□ -0.61
CSDE1-204ENST00000369530 ATP10AO60312 1499 aa11.22□□□□□ -0.61
CSDE1-204ENST00000369530 C9orf84Q5VXU9 1444 aa11.22□□□□□ -0.61
CSDE1-204ENST00000369530 ALKQ9UM73 1620 aa11.21□□□□□ -0.61
CSDE1-204ENST00000369530 PLEKHH2Q8IVE3 1493 aa11.21□□□□□ -0.62
CSDE1-204ENST00000369530 FAM69CQ0P6D2 419 aa11.19□□□□□ -0.62
CSDE1-204ENST00000369530 ARHGAP5Q13017 1502 aa11.19□□□□□ -0.62
CSDE1-204ENST00000369530 PTPRMP28827 1452 aa11.19□□□□□ -0.62
CSDE1-204ENST00000369530 E9PCH4 1651 aa11.18□□□□□ -0.62
CSDE1-204ENST00000369530 SYNMO15061 1565 aa11.18□□□□□ -0.62
CSDE1-204ENST00000369530 TET3O43151 1660 aa11.16□□□□□ -0.62
CSDE1-204ENST00000369530 MYO5BQ9ULV0 1848 aa11.16□□□□□ -0.62
CSDE1-204ENST00000369530 UGGT1Q9NYU2 1555 aa11.16□□□□□ -0.62
CSDE1-204ENST00000369530 RRBP1Q9P2E9 1410 aaKnown RBP11.15□□□□□ -0.62
CSDE1-204ENST00000369530 ABCC3O15438 1527 aa11.15□□□□□ -0.62
CSDE1-204ENST00000369530 MYOM3Q5VTT5 1437 aa11.15□□□□□ -0.62
CSDE1-204ENST00000369530 PTPRKQ15262 1439 aa11.14□□□□□ -0.63
CSDE1-204ENST00000369530 EFCAB6Q5THR3 1501 aa11.14□□□□□ -0.63
CSDE1-204ENST00000369530 CCDC141Q6ZP82 1450 aa11.14□□□□□ -0.63
CSDE1-204ENST00000369530 NRXN3Q9Y4C0 1643 aa11.13□□□□□ -0.63
CSDE1-204ENST00000369530 LTBP4Q8N2S1 1624 aa11.12□□□□□ -0.63
CSDE1-204ENST00000369530 ABCC5O15440 1437 aa11.12□□□□□ -0.63
CSDE1-204ENST00000369530 DUOX2Q9NRD8 1548 aa11.12□□□□□ -0.63
CSDE1-204ENST00000369530 SCAPERQ9BY12 1400 aa11.11□□□□□ -0.63
CSDE1-204ENST00000369530 NPATQ14207 1427 aa11.11□□□□□ -0.63
CSDE1-204ENST00000369530 ARHGAP31Q2M1Z3 1444 aa11.11□□□□□ -0.63
CSDE1-204ENST00000369530 TMEM131LA2VDJ0 1609 aa11.1□□□□□ -0.63
CSDE1-204ENST00000369530 ERBINQ96RT1 1412 aa11.09□□□□□ -0.63
CSDE1-204ENST00000369530 CEP170BQ9Y4F5 1589 aaPredicted RBP11.09□□□□□ -0.63
CSDE1-204ENST00000369530 NWD1Q149M9 1564 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms