RNA–Protein interactions for RNA: ENST00000368436.1

CKS1B-202, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 2 BASIC

Gene CKS1B, Length 820 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-202ENST00000368436 TROQ12816 1431 aaPredicted RBP26.32■■□□□ 1.8
CKS1B-202ENST00000368436 POGZQ7Z3K3 1410 aa26.31■■□□□ 1.8
CKS1B-202ENST00000368436 YEATS2Q9ULM3 1422 aa26.31■■□□□ 1.8
CKS1B-202ENST00000368436 SIGLEC1Q9BZZ2 1709 aa26.31■■□□□ 1.8
CKS1B-202ENST00000368436 EFCAB2Q5VUJ9 269 aa26.3■■□□□ 1.8
CKS1B-202ENST00000368436 ILDR1Q86SU0 546 aaPredicted RBP26.29■■□□□ 1.8
CKS1B-202ENST00000368436 RIMS1Q86UR5 1692 aaKnown RBP26.28■■□□□ 1.8
CKS1B-202ENST00000368436 CLIP1P30622 1438 aa26.26■■□□□ 1.79
CKS1B-202ENST00000368436 CASKIN1Q8WXD9 1431 aa26.24■■□□□ 1.79
CKS1B-202ENST00000368436 PCF11O94913 1555 aaKnown RBP26.24■■□□□ 1.79
CKS1B-202ENST00000368436 ARHGAP5Q13017 1502 aa26.21■■□□□ 1.79
CKS1B-202ENST00000368436 CDC42BPBQ9Y5S2 1711 aa26.2■■□□□ 1.79
CKS1B-202ENST00000368436 CCDC18Q5T9S5 1454 aa26.2■■□□□ 1.78
CKS1B-202ENST00000368436 ATP10AO60312 1499 aa26.19■■□□□ 1.78
CKS1B-202ENST00000368436 ZNF518AQ6AHZ1 1483 aa26.17■■□□□ 1.78
CKS1B-202ENST00000368436 LMTK3Q96Q04 1460 aa26.17■■□□□ 1.78
CKS1B-202ENST00000368436 KDM5CP41229 1560 aa26.16■■□□□ 1.78
CKS1B-202ENST00000368436 FER1L4A9Z1Z3 1794 aa26.15■■□□□ 1.78
CKS1B-202ENST00000368436 C9orf84Q5VXU9 1444 aa26.15■■□□□ 1.78
CKS1B-202ENST00000368436 PREX2Q70Z35 1606 aa26.15■■□□□ 1.78
CKS1B-202ENST00000368436 FYCO1Q9BQS8 1478 aa26.13■■□□□ 1.77
CKS1B-202ENST00000368436 AFAP1Q8N556 730 aa26.12■■□□□ 1.77
CKS1B-202ENST00000368436 ARHGEF12Q9NZN5 1544 aa26.11■■□□□ 1.77
CKS1B-202ENST00000368436 MLECQ14165 292 aa26.11■■□□□ 1.77
CKS1B-202ENST00000368436 CDC42BPAQ5VT25 1732 aa26.09■■□□□ 1.77
CKS1B-202ENST00000368436 ABCC1P33527 1531 aa26.07■■□□□ 1.76
CKS1B-202ENST00000368436 MLH3Q9UHC1 1453 aa26.06■■□□□ 1.76
CKS1B-202ENST00000368436 DIP2CQ9Y2E4 1556 aa26.06■■□□□ 1.76
CKS1B-202ENST00000368436 ITSN2Q9NZM3 1697 aa26.06■■□□□ 1.76
CKS1B-202ENST00000368436 REREQ9P2R6 1566 aa26.05■■□□□ 1.76
CKS1B-202ENST00000368436 PLPPR3Q6T4P5 718 aa26.03■■□□□ 1.76
CKS1B-202ENST00000368436 TRAPPC8Q9Y2L5 1435 aa26.03■■□□□ 1.76
CKS1B-202ENST00000368436 ABCA6Q8N139 1617 aa26.03■■□□□ 1.76
CKS1B-202ENST00000368436 MYT1LQ9UL68 1186 aa25.99■■□□□ 1.75
CKS1B-202ENST00000368436 HSPA2P54652 639 aa25.98■■□□□ 1.75
CKS1B-202ENST00000368436 KIDINS220Q9ULH0 1771 aa25.97■■□□□ 1.75
CKS1B-202ENST00000368436 GPATCH8Q9UKJ3 1502 aaKnown RBP25.96■■□□□ 1.75
CKS1B-202ENST00000368436 AGLP35573 1532 aa25.95■■□□□ 1.74
CKS1B-202ENST00000368436 SAMD9LQ8IVG5 1584 aa25.95■■□□□ 1.74
CKS1B-202ENST00000368436 PREX1Q8TCU6 1659 aa25.94■■□□□ 1.74
CKS1B-202ENST00000368436 CEBPAP49715 358 aaPredicted RBP25.92■■□□□ 1.74
CKS1B-202ENST00000368436 FBXO41Q8TF61 875 aa25.92■■□□□ 1.74
CKS1B-202ENST00000368436 SETD1BQ9UPS6 1966 aaKnown RBP25.89■■□□□ 1.73
CKS1B-202ENST00000368436 ZNF777Q9ULD5 760 aaPredicted RBP25.88■■□□□ 1.73
CKS1B-202ENST00000368436 SYCP2Q9BX26 1530 aa25.88■■□□□ 1.73
CKS1B-202ENST00000368436 KIAA1107Q9UPP5 1409 aa25.86■■□□□ 1.73
CKS1B-202ENST00000368436 C3P01024 1663 aa25.86■■□□□ 1.73
CKS1B-202ENST00000368436 MTUS2Q5JR59 1369 aa25.84■■□□□ 1.73
CKS1B-202ENST00000368436 HNRNPMP52272 730 aaKnown RBP eCLIP25.84■■□□□ 1.73
CKS1B-202ENST00000368436 PLEKHH2Q8IVE3 1493 aa25.84■■□□□ 1.73
CKS1B-202ENST00000368436 CCNB3Q8WWL7 1395 aa25.83■■□□□ 1.73
CKS1B-202ENST00000368436 CFDP1Q9UEE9 299 aaPredicted RBP25.83■■□□□ 1.73
CKS1B-202ENST00000368436 SPAG9O60271 1321 aaKnown RBP25.82■■□□□ 1.72
CKS1B-202ENST00000368436 CEP162Q5TB80 1403 aa25.8■■□□□ 1.72
CKS1B-202ENST00000368436 INO80Q9ULG1 1556 aaPredicted RBP25.79■■□□□ 1.72
CKS1B-202ENST00000368436 UHRF1BP1Q6BDS2 1440 aa25.79■■□□□ 1.72
CKS1B-202ENST00000368436 ATP7AQ04656 1500 aa25.78■■□□□ 1.72
CKS1B-202ENST00000368436 EHBP1L1Q8N3D4 1523 aa25.78■■□□□ 1.72
CKS1B-202ENST00000368436 STRCQ7RTU9 1775 aa25.78■■□□□ 1.72
CKS1B-202ENST00000368436 ESF1Q9H501 851 aaKnown RBP25.78■■□□□ 1.72
CKS1B-202ENST00000368436 CNTLNQ9NXG0 1405 aa25.78■■□□□ 1.72
CKS1B-202ENST00000368436 TIAM1Q13009 1591 aa25.78■■□□□ 1.72
CKS1B-202ENST00000368436 SUPT6HQ7KZ85 1726 aaKnown RBP25.77■■□□□ 1.72
CKS1B-202ENST00000368436 MROH2AA6NES4 1674 aa25.75■■□□□ 1.71
CKS1B-202ENST00000368436 PLXNC1O60486 1568 aa25.74■■□□□ 1.71
CKS1B-202ENST00000368436 A2MP01023 1474 aa25.71■■□□□ 1.71
CKS1B-202ENST00000368436 ZNF644Q9H582 1327 aaPredicted RBP25.7■■□□□ 1.71
CKS1B-202ENST00000368436 MBD5Q9P267 1494 aa25.7■■□□□ 1.7
CKS1B-202ENST00000368436 ADGBQ8N7X0 1667 aa25.69■■□□□ 1.7
CKS1B-202ENST00000368436 DMRT2Q9Y5R5 561 aa25.69■■□□□ 1.7
CKS1B-202ENST00000368436 CERKQ8TCT0 537 aa25.68■■□□□ 1.7
CKS1B-202ENST00000368436 ZMYM3Q14202 1370 aa25.66■■□□□ 1.7
CKS1B-202ENST00000368436 CLTCQ00610 1675 aaKnown RBP25.65■■□□□ 1.7
CKS1B-202ENST00000368436 NPATQ14207 1427 aa25.65■■□□□ 1.7
CKS1B-202ENST00000368436 RTEL1-TNFRSF6BF6WH68 1400 aa25.63■■□□□ 1.69
CKS1B-202ENST00000368436 NCOA2Q15596 1464 aa25.62■■□□□ 1.69
CKS1B-202ENST00000368436 PTPRTO14522 1441 aa25.61■■□□□ 1.69
CKS1B-202ENST00000368436 PPP6R1Q9UPN7 881 aa25.58■■□□□ 1.69
CKS1B-202ENST00000368436 GGT6Q6P531 493 aa25.57■■□□□ 1.68
CKS1B-202ENST00000368436 NCOA1Q15788 1441 aa25.56■■□□□ 1.68
CKS1B-202ENST00000368436 CAMSAP2Q08AD1 1489 aa25.56■■□□□ 1.68
CKS1B-202ENST00000368436 VPS8Q8N3P4 1428 aa25.55■■□□□ 1.68
CKS1B-202ENST00000368436 LOC105371045A0A1W2PR82 267 aa25.55■■□□□ 1.68
CKS1B-202ENST00000368436 RSPH4AQ5TD94 716 aa25.55■■□□□ 1.68
CKS1B-202ENST00000368436 DHX29Q7Z478 1369 aaKnown RBP25.55■■□□□ 1.68
CKS1B-202ENST00000368436 PTPRKQ15262 1439 aa25.54■■□□□ 1.68
CKS1B-202ENST00000368436 CCDC141Q6ZP82 1450 aa25.54■■□□□ 1.68
CKS1B-202ENST00000368436 CAMSAP1Q5T5Y3 1602 aa25.52■■□□□ 1.68
CKS1B-202ENST00000368436 MYO3AQ8NEV4 1616 aa25.52■■□□□ 1.68
CKS1B-202ENST00000368436 ZNF142P52746 1687 aaPredicted RBP25.52■■□□□ 1.68
CKS1B-202ENST00000368436 LRRC9Q6ZRR7 1453 aa25.51■■□□□ 1.67
CKS1B-202ENST00000368436 ARHGEF5Q12774 1597 aa25.51■■□□□ 1.67
CKS1B-202ENST00000368436 MAP3K1Q13233 1512 aa25.47■■□□□ 1.67
CKS1B-202ENST00000368436 CEP170BQ9Y4F5 1589 aaPredicted RBP25.47■■□□□ 1.67
CKS1B-202ENST00000368436 LTBP4Q8N2S1 1624 aa25.46■■□□□ 1.67
CKS1B-202ENST00000368436 KIF3BO15066 747 aa25.44■■□□□ 1.66
CKS1B-202ENST00000368436 FAM135AQ9P2D6 1515 aa25.43■■□□□ 1.66
CKS1B-202ENST00000368436 PLA2R1Q13018 1463 aa25.43■■□□□ 1.66
CKS1B-202ENST00000368436 NCKAP5LQ9HCH0 1330 aa25.41■■□□□ 1.66
CKS1B-202ENST00000368436 TSPY4P0CV99 314 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms