RNA–Protein interactions for RNA: ENST00000368436.1

CKS1B-202, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 2 BASIC

Gene CKS1B, Length 820 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-202ENST00000368436 NISCHQ9Y2I1 1504 aa40.23■■■■■ 4.03
CKS1B-202ENST00000368436 CCDC180Q9P1Z9 1646 aa36.12■■■■□ 3.37
CKS1B-202ENST00000368436 ABCC9O60706 1549 aa35.98■■■■□ 3.35
CKS1B-202ENST00000368436 RB1CC1Q8TDY2 1594 aa34.32■■■■□ 3.08
CKS1B-202ENST00000368436 NACADO15069 1562 aa34.11■■■■□ 3.05
CKS1B-202ENST00000368436 DCAF8L2P0C7V8 631 aa33.83■■■■□ 3.01
CKS1B-202ENST00000368436 DNAJC5BQ9UF47 199 aa33.73■■■□□ 2.99
CKS1B-202ENST00000368436 MYO15BQ96JP2 1530 aa33.69■■■□□ 2.98
CKS1B-202ENST00000368436 UNC13AQ9UPW8 1703 aa33.59■■■□□ 2.97
CKS1B-202ENST00000368436 PABPN1Q86U42 306 aaKnown RBP eCLIP33.48■■■□□ 2.95
CKS1B-202ENST00000368436 ZCCHC6Q5VYS8 1495 aaKnown RBP33.35■■■□□ 2.93
CKS1B-202ENST00000368436 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
CKS1B-202ENST00000368436 DCAF1Q9Y4B6 1507 aa33.27■■■□□ 2.92
CKS1B-202ENST00000368436 SHROOM4Q9ULL8 1493 aa32.89■■■□□ 2.86
CKS1B-202ENST00000368436 SCRIBQ14160 1630 aa32.84■■■□□ 2.85
CKS1B-202ENST00000368436 CC2D2AQ9P2K1 1620 aa32.55■■■□□ 2.8
CKS1B-202ENST00000368436 EIF4G1Q04637 1599 aaKnown RBP32.49■■■□□ 2.79
CKS1B-202ENST00000368436 CECR2Q9BXF3 1484 aa32.42■■■□□ 2.78
CKS1B-202ENST00000368436 NCAPD3P42695 1498 aa31.49■■■□□ 2.63
CKS1B-202ENST00000368436 ATAD2BQ9ULI0 1458 aa31.38■■■□□ 2.61
CKS1B-202ENST00000368436 SMARCA4P51532 1647 aa31.37■■■□□ 2.61
CKS1B-202ENST00000368436 SMARCA2P51531 1590 aa31.3■■■□□ 2.6
CKS1B-202ENST00000368436 HMGXB3Q12766 1538 aa31.24■■■□□ 2.59
CKS1B-202ENST00000368436 BAZ1AQ9NRL2 1556 aaPredicted RBP31.22■■■□□ 2.59
CKS1B-202ENST00000368436 PEG3Q9GZU2 1588 aa31.1■■■□□ 2.57
CKS1B-202ENST00000368436 BAZ1BQ9UIG0 1483 aaKnown RBP31.05■■■□□ 2.56
CKS1B-202ENST00000368436 ERCC6Q03468 1493 aa31.03■■■□□ 2.56
CKS1B-202ENST00000368436 CUX2O14529 1486 aa31.01■■■□□ 2.56
CKS1B-202ENST00000368436 MROH2BQ7Z745 1585 aa30.98■■■□□ 2.55
CKS1B-202ENST00000368436 DNAJC5Q9H3Z4 198 aa30.95■■■□□ 2.55
CKS1B-202ENST00000368436 NESP48681 1621 aa30.94■■■□□ 2.54
CKS1B-202ENST00000368436 LAMC3Q9Y6N6 1575 aa30.76■■■□□ 2.52
CKS1B-202ENST00000368436 THOC2Q8NI27 1593 aaKnown RBP30.65■■■□□ 2.5
CKS1B-202ENST00000368436 WIZO95785 1651 aa30.63■■■□□ 2.49
CKS1B-202ENST00000368436 KIF21AQ7Z4S6 1674 aa30.58■■■□□ 2.49
CKS1B-202ENST00000368436 PDS5BQ9NTI5 1447 aa30.56■■■□□ 2.48
CKS1B-202ENST00000368436 CADPSQ9ULU8 1353 aa30.5■■■□□ 2.47
CKS1B-202ENST00000368436 RSF1Q96T23 1441 aaPredicted RBP30.36■■■□□ 2.45
CKS1B-202ENST00000368436 MRC2Q9UBG0 1479 aa30.29■■■□□ 2.44
CKS1B-202ENST00000368436 WDR62O43379 1518 aa30.24■■■□□ 2.43
CKS1B-202ENST00000368436 TOP2AP11388 1531 aaKnown RBP30.24■■■□□ 2.43
CKS1B-202ENST00000368436 CFTRP13569 1480 aa30.19■■■□□ 2.42
CKS1B-202ENST00000368436 CEP164Q9UPV0 1460 aa30.17■■■□□ 2.42
CKS1B-202ENST00000368436 FANCD2Q9BXW9 1451 aa30.14■■■□□ 2.42
CKS1B-202ENST00000368436 PRDM2Q13029 1718 aa29.94■■■□□ 2.38
CKS1B-202ENST00000368436 URB2Q14146 1524 aaKnown RBP29.91■■■□□ 2.38
CKS1B-202ENST00000368436 CCDC88BA6NC98 1476 aa29.89■■■□□ 2.38
CKS1B-202ENST00000368436 TOPBP1Q92547 1522 aa29.6■■■□□ 2.33
CKS1B-202ENST00000368436 OSCARQ8IYS5 282 aa29.59■■■□□ 2.33
CKS1B-202ENST00000368436 IFT140Q96RY7 1462 aa29.58■■■□□ 2.33
CKS1B-202ENST00000368436 ABCC8Q09428 1581 aa29.56■■■□□ 2.32
CKS1B-202ENST00000368436 TRIM41Q8WV44 630 aa29.53■■■□□ 2.32
CKS1B-202ENST00000368436 ZNF608Q9ULD9 1512 aaPredicted RBP29.51■■■□□ 2.32
CKS1B-202ENST00000368436 DNMBPQ6XZF7 1577 aa29.5■■■□□ 2.31
CKS1B-202ENST00000368436 EIF4G3O43432 1585 aaKnown RBP29.38■■■□□ 2.29
CKS1B-202ENST00000368436 TARBP1Q13395 1621 aaKnown RBP29.36■■■□□ 2.29
CKS1B-202ENST00000368436 POLA1P09884 1462 aaPredicted RBP29.29■■■□□ 2.28
CKS1B-202ENST00000368436 AQRO60306 1485 aaKnown RBP eCLIP29.25■■■□□ 2.272e-6■□□□□ 10.6
CKS1B-202ENST00000368436 RIMBP3CA6NJZ7 1639 aa29.23■■■□□ 2.27
CKS1B-202ENST00000368436 RIMBP3BA6NNM3 1639 aa29.23■■■□□ 2.27
CKS1B-202ENST00000368436 RIMBP3Q9UFD9 1639 aa29.23■■■□□ 2.27
CKS1B-202ENST00000368436 RAD54L2Q9Y4B4 1467 aa29.17■■■□□ 2.26
CKS1B-202ENST00000368436 CHD1O14646 1710 aa29.17■■■□□ 2.26
CKS1B-202ENST00000368436 SOGA1O94964 1423 aa29.16■■■□□ 2.26
CKS1B-202ENST00000368436 ARHGEF11O15085 1522 aa29.12■■■□□ 2.25
CKS1B-202ENST00000368436 FGD5Q6ZNL6 1462 aa29.11■■■□□ 2.25
CKS1B-202ENST00000368436 CUX1P39880 1505 aa29.1■■■□□ 2.25
CKS1B-202ENST00000368436 WDR97A6NE52 1622 aa29.08■■■□□ 2.25
CKS1B-202ENST00000368436 TDRD9Q8NDG6 1382 aaKnown RBP29.07■■■□□ 2.24
CKS1B-202ENST00000368436 FBLN2P98095 1184 aa28.99■■■□□ 2.23
CKS1B-202ENST00000368436 SUPT5HO00267 1087 aaKnown RBP28.98■■■□□ 2.23
CKS1B-202ENST00000368436 SNAPC4Q5SXM2 1469 aa28.95■■■□□ 2.22
CKS1B-202ENST00000368436 MAGI1Q96QZ7 1491 aaPredicted RBP28.91■■■□□ 2.22
CKS1B-202ENST00000368436 GRIN2BQ13224 1484 aa28.9■■■□□ 2.22
CKS1B-202ENST00000368436 CYB5RLQ6IPT4 315 aa28.87■■■□□ 2.21
CKS1B-202ENST00000368436 ARAP1Q96P48 1450 aa28.84■■■□□ 2.21
CKS1B-202ENST00000368436 CLASP1Q7Z460 1538 aa28.84■■■□□ 2.21
CKS1B-202ENST00000368436 PBRM1Q86U86 1689 aa28.83■■■□□ 2.21
CKS1B-202ENST00000368436 CHMP7Q8WUX9 453 aaPredicted RBP28.82■■■□□ 2.2
CKS1B-202ENST00000368436 SYNJ1O43426 1573 aa28.8■■■□□ 2.2
CKS1B-202ENST00000368436 ABCA10Q8WWZ4 1543 aa28.8■■■□□ 2.2
CKS1B-202ENST00000368436 SYNJ2O15056 1496 aa28.8■■■□□ 2.2
CKS1B-202ENST00000368436 GAPVD1Q14C86 1478 aa28.8■■■□□ 2.2
CKS1B-202ENST00000368436 ABCA5Q8WWZ7 1642 aa28.77■■■□□ 2.2
CKS1B-202ENST00000368436 BIVM-ERCC5R4GMW8 1640 aa28.69■■■□□ 2.18
CKS1B-202ENST00000368436 TOP2BQ02880 1626 aa28.67■■■□□ 2.18
CKS1B-202ENST00000368436 WRNQ14191 1432 aaPredicted RBP eCLIP28.67■■■□□ 2.18
CKS1B-202ENST00000368436 GRIN2AQ12879 1464 aa28.53■■■□□ 2.16
CKS1B-202ENST00000368436 ADAMTS12P58397 1594 aa28.53■■■□□ 2.16
CKS1B-202ENST00000368436 TRHP20396 242 aaPredicted RBP28.51■■■□□ 2.15
CKS1B-202ENST00000368436 ERICH3Q5RHP9 1530 aa28.45■■■□□ 2.15
CKS1B-202ENST00000368436 FHAD1B1AJZ9 1412 aa28.44■■■□□ 2.14
CKS1B-202ENST00000368436 NUP160Q12769 1436 aa28.44■■■□□ 2.14
CKS1B-202ENST00000368436 CEP170Q5SW79 1584 aa28.44■■■□□ 2.14
CKS1B-202ENST00000368436 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
CKS1B-202ENST00000368436 SHROOM2Q13796 1616 aa28.35■■■□□ 2.13
CKS1B-202ENST00000368436 PRG4Q92954 1404 aaPredicted RBP28.14■■■□□ 2.1
CKS1B-202ENST00000368436 JPH4Q96JJ6 628 aa28.13■■■□□ 2.09
CKS1B-202ENST00000368436 RUSC2Q8N2Y8 1516 aa28.13■■■□□ 2.09
CKS1B-202ENST00000368436 IGF1RP08069 1367 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms