RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 MS4A4AQ96JQ5 239 aa15.52■□□□□ 0.08
YBX3-204ENST00000366290 PHF8Q9UPP1 1060 aa15.52■□□□□ 0.08
YBX3-204ENST00000366290 NLRP6P59044 892 aa15.5■□□□□ 0.07
YBX3-204ENST00000366290 L3MBTL3Q96JM7 780 aaPredicted RBP15.5■□□□□ 0.07
YBX3-204ENST00000366290 UNC13AQ9UPW8 1703 aa15.5■□□□□ 0.07
YBX3-204ENST00000366290 FBXO22Q8NEZ5 403 aa15.49■□□□□ 0.07
YBX3-204ENST00000366290 BOLA1Q9Y3E2 137 aa15.44■□□□□ 0.06
YBX3-204ENST00000366290 BICRAQ9NZM4 1560 aa15.44■□□□□ 0.06
YBX3-204ENST00000366290 SLAIN1Q8ND83 568 aa15.43■□□□□ 0.06
YBX3-204ENST00000366290 PPP1R37O75864 691 aa15.42■□□□□ 0.06
YBX3-204ENST00000366290 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.42■□□□□ 0.06
YBX3-204ENST00000366290 CADPS2Q86UW7 1296 aa15.41■□□□□ 0.06
YBX3-204ENST00000366290 TMEM121BQ9BXQ6 578 aaPredicted RBP15.41■□□□□ 0.06
YBX3-204ENST00000366290 C3orf67Q6ZVT6 689 aa15.4■□□□□ 0.06
YBX3-204ENST00000366290 MICALL2Q8IY33 904 aa15.35■□□□□ 0.05
YBX3-204ENST00000366290 G3V3G9 751 aa15.33■□□□□ 0.04
YBX3-204ENST00000366290 NBR1Q14596 966 aa15.31■□□□□ 0.04
YBX3-204ENST00000366290 LCE2DQ5TA82 110 aaPredicted RBP15.31■□□□□ 0.04
YBX3-204ENST00000366290 WDR70Q9NW82 654 aa15.28■□□□□ 0.04
YBX3-204ENST00000366290 TMEM92Q6UXU6 159 aa15.25■□□□□ 0.03
YBX3-204ENST00000366290 SHROOM4Q9ULL8 1493 aa15.23■□□□□ 0.03
YBX3-204ENST00000366290 P3H3Q8IVL6 736 aa15.22■□□□□ 0.03
YBX3-204ENST00000366290 FAM163AQ96GL9 167 aaPredicted RBP15.21■□□□□ 0.03
YBX3-204ENST00000366290 SCRIBQ14160 1630 aa15.2■□□□□ 0.02
YBX3-204ENST00000366290 KCNV2Q8TDN2 545 aa15.16■□□□□ 0.02
YBX3-204ENST00000366290 NCKAP5LQ9HCH0 1330 aa15.15■□□□□ 0.02
YBX3-204ENST00000366290 ST18O60284 1047 aa15.14■□□□□ 0.01
YBX3-204ENST00000366290 PRKCSHP14314 528 aaPredicted RBP15.14■□□□□ 0.01
YBX3-204ENST00000366290 SNPHO15079 494 aa15.13■□□□□ 0.01
YBX3-204ENST00000366290 POTEMA6NI47 508 aa15.11■□□□□ 0.01
YBX3-204ENST00000366290 PDE4AP27815 886 aa15.11■□□□□ 0.01
YBX3-204ENST00000366290 CRISPLD2Q9H0B8 497 aa15.11■□□□□ 0.01
YBX3-204ENST00000366290 LARP6Q9BRS8 491 aaKnown RBP15.1■□□□□ 0.01
YBX3-204ENST00000366290 HOXB3P14651 431 aaPredicted RBP15.09■□□□□ 0.01
YBX3-204ENST00000366290 TPRNQ4KMQ1 711 aa15.09■□□□□ 0.01
YBX3-204ENST00000366290 POTEGQ6S5H5 508 aa15.09■□□□□ 0.01
YBX3-204ENST00000366290 KIF3CO14782 793 aa15.08■□□□□ 0
YBX3-204ENST00000366290 CC2D2AQ9P2K1 1620 aa15.07■□□□□ 0
YBX3-204ENST00000366290 E2F4Q16254 413 aa15.07■□□□□ 0
YBX3-204ENST00000366290 MFSD10Q14728 455 aa15.06■□□□□ 0
YBX3-204ENST00000366290 CECR2Q9BXF3 1484 aa15.03■□□□□ -0
YBX3-204ENST00000366290 C2orf72A6NCS6 295 aa15.03■□□□□ -0
YBX3-204ENST00000366290 DDX27Q96GQ7 796 aaKnown RBP15.02■□□□□ -0
YBX3-204ENST00000366290 EIF4G1Q04637 1599 aaKnown RBP15.01□□□□□ -0.01
YBX3-204ENST00000366290 ARHGEF1Q92888 912 aaKnown RBP15□□□□□ -0.01
YBX3-204ENST00000366290 DOK7Q18PE1 504 aa14.97□□□□□ -0.01
YBX3-204ENST00000366290 GPHNQ9NQX3 736 aaPredicted RBP14.96□□□□□ -0.01
YBX3-204ENST00000366290 MARVELD3Q96A59 401 aa14.94□□□□□ -0.02
YBX3-204ENST00000366290 TMC2Q8TDI7 906 aa14.93□□□□□ -0.02
YBX3-204ENST00000366290 CAMK2BQ13554 666 aa14.92□□□□□ -0.02
YBX3-204ENST00000366290 PPP1R15BQ5SWA1 713 aa14.92□□□□□ -0.02
YBX3-204ENST00000366290 ZNF710Q8N1W2 664 aa14.9□□□□□ -0.02
YBX3-204ENST00000366290 HOXB1P14653 301 aaPredicted RBP14.89□□□□□ -0.03
YBX3-204ENST00000366290 RIMBP2O15034 1052 aa14.87□□□□□ -0.03
YBX3-204ENST00000366290 ZSWIM6Q9HCJ5 1215 aa14.87□□□□□ -0.03
YBX3-204ENST00000366290 DSG2Q14126 1118 aa14.86□□□□□ -0.03
YBX3-204ENST00000366290 ARIH1Q9Y4X5 557 aaPredicted RBP14.86□□□□□ -0.03
YBX3-204ENST00000366290 EMP3P54852 163 aa14.85□□□□□ -0.03
YBX3-204ENST00000366290 FOXK1P85037 733 aa14.85□□□□□ -0.03
YBX3-204ENST00000366290 GPR153Q6NV75 609 aa14.85□□□□□ -0.03
YBX3-204ENST00000366290 SEMA3EO15041 775 aa14.83□□□□□ -0.04
YBX3-204ENST00000366290 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.81□□□□□ -0.04
YBX3-204ENST00000366290 POTEB3A0JP26 581 aa14.8□□□□□ -0.04
YBX3-204ENST00000366290 TESPA1A2RU30 521 aaPredicted RBP14.8□□□□□ -0.04
YBX3-204ENST00000366290 SLC34A2O95436 690 aa14.8□□□□□ -0.04
YBX3-204ENST00000366290 LMOD2Q6P5Q4 547 aa14.8□□□□□ -0.04
YBX3-204ENST00000366290 POTEBQ6S5H4 581 aa14.8□□□□□ -0.04
YBX3-204ENST00000366290 TULP1O00294 542 aaPredicted RBP14.79□□□□□ -0.04
YBX3-204ENST00000366290 PLPP6Q8IY26 295 aa14.79□□□□□ -0.04
YBX3-204ENST00000366290 PCDH10Q9P2E7 1040 aa14.79□□□□□ -0.04
YBX3-204ENST00000366290 ARSIQ5FYB1 569 aa14.78□□□□□ -0.04
YBX3-204ENST00000366290 CDAN1Q8IWY9 1227 aa14.77□□□□□ -0.05
YBX3-204ENST00000366290 KHSRPQ92945 711 aaKnown RBP eCLIP14.77□□□□□ -0.05
YBX3-204ENST00000366290 FAM205CA6NFA0 338 aa14.76□□□□□ -0.05
YBX3-204ENST00000366290 HS3ST6Q96QI5 342 aa14.76□□□□□ -0.05
YBX3-204ENST00000366290 EMILIN3Q9NT22 766 aa14.76□□□□□ -0.05
YBX3-204ENST00000366290 DPYSL4O14531 572 aa14.72□□□□□ -0.05
YBX3-204ENST00000366290 PCDHGA4Q9Y5G9 962 aa14.72□□□□□ -0.05
YBX3-204ENST00000366290 PTCD2Q8WV60 388 aaKnown RBP14.7□□□□□ -0.06
YBX3-204ENST00000366290 ERBB3P21860 1342 aa14.68□□□□□ -0.06
YBX3-204ENST00000366290 SMYD5Q6GMV2 418 aa14.68□□□□□ -0.06
YBX3-204ENST00000366290 NUDT7P0C024 238 aa14.67□□□□□ -0.06
YBX3-204ENST00000366290 SPDYE16A6NNV3 312 aaPredicted RBP14.65□□□□□ -0.06
YBX3-204ENST00000366290 PDIA6Q15084 440 aa14.65□□□□□ -0.06
YBX3-204ENST00000366290 VARS2Q5ST30 1063 aaKnown RBP14.65□□□□□ -0.06
YBX3-204ENST00000366290 KDM4FA0A1W2PPD8 638 aa14.64□□□□□ -0.07
YBX3-204ENST00000366290 ZNF316A6NFI3 1004 aaPredicted RBP14.62□□□□□ -0.07
YBX3-204ENST00000366290 MLLT3P42568 568 aaPredicted RBP14.62□□□□□ -0.07
YBX3-204ENST00000366290 OXER1Q8TDS5 423 aa14.61□□□□□ -0.07
YBX3-204ENST00000366290 KRTAP3-3Q9BYR6 98 aa14.61□□□□□ -0.07
YBX3-204ENST00000366290 KRTAP3-2Q9BYR7 98 aa14.61□□□□□ -0.07
YBX3-204ENST00000366290 UPF1Q92900 1129 aaKnown RBP eCLIP14.6□□□□□ -0.07
YBX3-204ENST00000366290 MAP3K9P80192 1104 aa14.59□□□□□ -0.07
YBX3-204ENST00000366290 SMARCA4P51532 1647 aa14.59□□□□□ -0.07
YBX3-204ENST00000366290 ZC3H15Q8WU90 426 aaKnown RBP14.58□□□□□ -0.08
YBX3-204ENST00000366290 LHX6Q9UPM6 363 aa14.58□□□□□ -0.08
YBX3-204ENST00000366290 NCAPD3P42695 1498 aa14.57□□□□□ -0.08
YBX3-204ENST00000366290 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
YBX3-204ENST00000366290 ZNF687Q8N1G0 1237 aa14.54□□□□□ -0.08
YBX3-204ENST00000366290 ATAD2BQ9ULI0 1458 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 383 ms