RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 CHMP4BQ9H444 224 aaKnown RBP13.06□□□□□ -0.32
CLIP1-202ENST00000358808 CARMIL1Q5VZK9 1371 aa13.05□□□□□ -0.32
CLIP1-202ENST00000358808 SOX12O15370 315 aa13.05□□□□□ -0.32
CLIP1-202ENST00000358808 ERICH6BQ5W0A0 696 aa13.05□□□□□ -0.32
CLIP1-202ENST00000358808 U2SURPO15042 1029 aaKnown RBP13.04□□□□□ -0.32
CLIP1-202ENST00000358808 RGS3P49796 1198 aa13.04□□□□□ -0.32
CLIP1-202ENST00000358808 CARMIL2Q6F5E8 1435 aa13.03□□□□□ -0.32
CLIP1-202ENST00000358808 MLECQ14165 292 aa13.03□□□□□ -0.32
CLIP1-202ENST00000358808 MCCP23508 829 aa13.02□□□□□ -0.33
CLIP1-202ENST00000358808 ZNF330Q9Y3S2 320 aaPredicted RBP13.02□□□□□ -0.33
CLIP1-202ENST00000358808 TDRD9Q8NDG6 1382 aaKnown RBP13.01□□□□□ -0.33
CLIP1-202ENST00000358808 A0A0U1RQG5 324 aaPredicted RBP13□□□□□ -0.33
CLIP1-202ENST00000358808 G3V3G9 751 aa12.99□□□□□ -0.33
CLIP1-202ENST00000358808 DCAF8Q5TAQ9 597 aa12.99□□□□□ -0.33
CLIP1-202ENST00000358808 CCDC9Q9Y3X0 531 aaKnown RBP12.99□□□□□ -0.33
CLIP1-202ENST00000358808 RTN4Q9NQC3 1192 aaKnown RBP12.98□□□□□ -0.33
CLIP1-202ENST00000358808 MS4A1P11836 297 aa12.98□□□□□ -0.33
CLIP1-202ENST00000358808 HDGFP51858 240 aaKnown RBP12.97□□□□□ -0.33
CLIP1-202ENST00000358808 HSCBQ8IWL3 235 aa12.97□□□□□ -0.33
CLIP1-202ENST00000358808 MSNP26038 577 aaKnown RBP12.96□□□□□ -0.33
CLIP1-202ENST00000358808 CARD11Q9BXL7 1154 aa12.96□□□□□ -0.34
CLIP1-202ENST00000358808 ANO8Q9HCE9 1232 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-202ENST00000358808 CSB-PGBD3P0DP91 1061 aa12.95□□□□□ -0.34
CLIP1-202ENST00000358808 KANK1Q14678 1352 aa12.95□□□□□ -0.34
CLIP1-202ENST00000358808 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-202ENST00000358808 HMGXB3Q12766 1538 aa12.94□□□□□ -0.34
CLIP1-202ENST00000358808 RTF1Q92541 710 aaKnown RBP12.94□□□□□ -0.34
CLIP1-202ENST00000358808 CC2D1BQ5T0F9 858 aaKnown RBP12.93□□□□□ -0.34
CLIP1-202ENST00000358808 SUPT16HQ9Y5B9 1047 aaKnown RBP12.93□□□□□ -0.34
CLIP1-202ENST00000358808 SPRYD3Q8NCJ5 442 aa12.92□□□□□ -0.34
CLIP1-202ENST00000358808 FBXO3Q9UK99 471 aa12.92□□□□□ -0.34
CLIP1-202ENST00000358808 OSCARQ8IYS5 282 aa12.92□□□□□ -0.34
CLIP1-202ENST00000358808 VPS53Q5VIR6 699 aa12.92□□□□□ -0.34
CLIP1-202ENST00000358808 KIAA1211Q6ZU35 1233 aa12.91□□□□□ -0.34
CLIP1-202ENST00000358808 CEP89Q96ST8 783 aa12.91□□□□□ -0.34
CLIP1-202ENST00000358808 CCNB3Q8WWL7 1395 aa12.91□□□□□ -0.34
CLIP1-202ENST00000358808 APBB1O00213 710 aa12.91□□□□□ -0.34
CLIP1-202ENST00000358808 RASSF8Q8NHQ8 419 aa12.91□□□□□ -0.34
CLIP1-202ENST00000358808 HSP90B1P14625 803 aaKnown RBP12.91□□□□□ -0.34
CLIP1-202ENST00000358808 BICRAQ9NZM4 1560 aa12.9□□□□□ -0.34
CLIP1-202ENST00000358808 MRC2Q9UBG0 1479 aa12.9□□□□□ -0.34
CLIP1-202ENST00000358808 CEP162Q5TB80 1403 aa12.9□□□□□ -0.34
CLIP1-202ENST00000358808 PAK3O75914 559 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-202ENST00000358808 FHAD1B1AJZ9 1412 aa12.9□□□□□ -0.34
CLIP1-202ENST00000358808 GORABQ5T7V8 394 aa12.9□□□□□ -0.35
CLIP1-202ENST00000358808 TNIKQ9UKE5 1360 aa12.89□□□□□ -0.35
CLIP1-202ENST00000358808 SRPK2P78362 688 aaKnown RBP12.89□□□□□ -0.35
CLIP1-202ENST00000358808 CREBRFQ8IUR6 639 aa12.88□□□□□ -0.35
CLIP1-202ENST00000358808 TPM4P67936 248 aa12.88□□□□□ -0.35
CLIP1-202ENST00000358808 CHMP3Q9Y3E7 222 aa12.88□□□□□ -0.35
CLIP1-202ENST00000358808 TAF7LQ5H9L4 462 aa12.88□□□□□ -0.35
CLIP1-202ENST00000358808 WWC1Q8IX03 1113 aa12.87□□□□□ -0.35
CLIP1-202ENST00000358808 HTATSF1O43719 755 aaKnown RBP12.86□□□□□ -0.35
CLIP1-202ENST00000358808 MARCH6O60337 910 aa12.86□□□□□ -0.35
CLIP1-202ENST00000358808 SAFB2Q14151 953 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLIP1-202ENST00000358808 GOLGA6L1Q8N7Z2 621 aa12.85□□□□□ -0.35
CLIP1-202ENST00000358808 CNKSR2Q8WXI2 1034 aa12.85□□□□□ -0.35
CLIP1-202ENST00000358808 CFAP44Q96MT7 982 aa12.84□□□□□ -0.35
CLIP1-202ENST00000358808 GGT6Q6P531 493 aa12.84□□□□□ -0.35
CLIP1-202ENST00000358808 RAPGEF2Q9Y4G8 1499 aa12.84□□□□□ -0.35
CLIP1-202ENST00000358808 CCDC34Q96HJ3 373 aa12.83□□□□□ -0.35
CLIP1-202ENST00000358808 ARID3AQ99856 593 aa12.83□□□□□ -0.35
CLIP1-202ENST00000358808 TNNT3P45378 269 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-202ENST00000358808 FGD5Q6ZNL6 1462 aa12.83□□□□□ -0.36
CLIP1-202ENST00000358808 FRAT2O75474 233 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-202ENST00000358808 UNC13AQ9UPW8 1703 aa12.82□□□□□ -0.36
CLIP1-202ENST00000358808 MORC1Q86VD1 984 aa12.81□□□□□ -0.36
CLIP1-202ENST00000358808 NOP58Q9Y2X3 529 aaKnown RBP12.81□□□□□ -0.36
CLIP1-202ENST00000358808 GAPVD1Q14C86 1478 aa12.81□□□□□ -0.36
CLIP1-202ENST00000358808 TOMM22Q9NS69 142 aa12.8□□□□□ -0.36
CLIP1-202ENST00000358808 NESP48681 1621 aa12.79□□□□□ -0.36
CLIP1-202ENST00000358808 GTF2E1P29083 439 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-202ENST00000358808 GPATCH3Q96I76 525 aa12.78□□□□□ -0.36
CLIP1-202ENST00000358808 STK26Q9P289 416 aa12.78□□□□□ -0.36
CLIP1-202ENST00000358808 IFT140Q96RY7 1462 aa12.78□□□□□ -0.36
CLIP1-202ENST00000358808 DCAF11Q8TEB1 546 aa12.78□□□□□ -0.36
CLIP1-202ENST00000358808 TMF1P82094 1093 aa12.78□□□□□ -0.36
CLIP1-202ENST00000358808 TPM3P06753 285 aa12.78□□□□□ -0.36
CLIP1-202ENST00000358808 CFTRP13569 1480 aa12.78□□□□□ -0.36
CLIP1-202ENST00000358808 HDGFL2Q7Z4V5 671 aaPredicted RBP12.77□□□□□ -0.36
CLIP1-202ENST00000358808 JPH4Q96JJ6 628 aa12.77□□□□□ -0.37
CLIP1-202ENST00000358808 PPP4R2Q9NY27 417 aa12.77□□□□□ -0.37
CLIP1-202ENST00000358808 TCEAL9Q9UHQ7 104 aa12.77□□□□□ -0.37
CLIP1-202ENST00000358808 MSH5O43196 834 aa12.77□□□□□ -0.37
CLIP1-202ENST00000358808 B4GALNT3Q6L9W6 998 aa12.77□□□□□ -0.37
CLIP1-202ENST00000358808 FMN1Q68DA7 1419 aa12.77□□□□□ -0.37
CLIP1-202ENST00000358808 LAMC3Q9Y6N6 1575 aa12.77□□□□□ -0.37
CLIP1-202ENST00000358808 CTDP1Q9Y5B0 961 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-202ENST00000358808 DNAJC5BQ9UF47 199 aa12.76□□□□□ -0.37
CLIP1-202ENST00000358808 PES1O00541 588 aaKnown RBP12.76□□□□□ -0.37
CLIP1-202ENST00000358808 RAD54L2Q9Y4B4 1467 aa12.75□□□□□ -0.37
CLIP1-202ENST00000358808 USP35Q9P2H5 1018 aa12.75□□□□□ -0.37
CLIP1-202ENST00000358808 IPO8O15397 1037 aaKnown RBP12.75□□□□□ -0.37
CLIP1-202ENST00000358808 SYAP1Q96A49 352 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-202ENST00000358808 GBP4Q96PP9 640 aa12.74□□□□□ -0.37
CLIP1-202ENST00000358808 CYB5RLQ6IPT4 315 aa12.74□□□□□ -0.37
CLIP1-202ENST00000358808 CWC22Q9HCG8 908 aaKnown RBP12.74□□□□□ -0.37
CLIP1-202ENST00000358808 PATL2C9JE40 543 aaKnown RBP12.73□□□□□ -0.37
CLIP1-202ENST00000358808 TRIM6-TRIM34B2RNG4 842 aa12.73□□□□□ -0.37
CLIP1-202ENST00000358808 RAD21O60216 631 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms