RNA–Protein interactions for RNA: ENST00000355354.11

CD47-201, Transcript of CD47 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD47, Length 5,020 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-201ENST00000355354 PREX1Q8TCU6 1659 aa9.27□□□□□ -0.92
CD47-201ENST00000355354 CARMIL1Q5VZK9 1371 aa9.27□□□□□ -0.93
CD47-201ENST00000355354 CHMP7Q8WUX9 453 aaPredicted RBP9.27□□□□□ -0.93
CD47-201ENST00000355354 EP400Q96L91 3159 aa9.27□□□□□ -0.93
CD47-201ENST00000355354 ADGBQ8N7X0 1667 aa9.26□□□□□ -0.93
CD47-201ENST00000355354 C3P01024 1663 aa9.26□□□□□ -0.93
CD47-201ENST00000355354 KIF14Q15058 1648 aa9.26□□□□□ -0.93
CD47-201ENST00000355354 ABCA6Q8N139 1617 aa9.26□□□□□ -0.93
CD47-201ENST00000355354 DNAH14Q0VDD8 3507 aa9.25□□□□□ -0.93
CD47-201ENST00000355354 INO80Q9ULG1 1556 aaPredicted RBP9.24□□□□□ -0.93
CD47-201ENST00000355354 NEO1Q92859 1461 aa9.23□□□□□ -0.93
CD47-201ENST00000355354 LMTK3Q96Q04 1460 aa9.23□□□□□ -0.93
CD47-201ENST00000355354 SENP3-EIF4A1A0A087X0R7 540 aa9.22□□□□□ -0.93
CD47-201ENST00000355354 MYO15AQ9UKN7 3530 aa9.22□□□□□ -0.93
CD47-201ENST00000355354 PCF11O94913 1555 aaKnown RBP9.21□□□□□ -0.93
CD47-201ENST00000355354 DIP2CQ9Y2E4 1556 aa9.21□□□□□ -0.93
CD47-201ENST00000355354 TEX14Q8IWB6 1497 aa9.21□□□□□ -0.93
CD47-201ENST00000355354 RIMS1Q86UR5 1692 aaKnown RBP9.2□□□□□ -0.94
CD47-201ENST00000355354 ALKQ9UM73 1620 aa9.2□□□□□ -0.94
CD47-201ENST00000355354 GOLGA3Q08378 1498 aa9.19□□□□□ -0.94
CD47-201ENST00000355354 FHOD3Q2V2M9 1422 aa9.19□□□□□ -0.94
CD47-201ENST00000355354 HIRIP3Q9BW71 556 aaPredicted RBP9.19□□□□□ -0.94
CD47-201ENST00000355354 HECW1Q76N89 1606 aa9.19□□□□□ -0.94
CD47-201ENST00000355354 XIRP1Q702N8 1843 aaKnown RBP9.19□□□□□ -0.94
CD47-201ENST00000355354 PTPRGP23470 1445 aa9.17□□□□□ -0.94
CD47-201ENST00000355354 ABCC1P33527 1531 aa9.16□□□□□ -0.94
CD47-201ENST00000355354 AGLP35573 1532 aa9.15□□□□□ -0.94
CD47-201ENST00000355354 CROCC2H7BZ55 1655 aa9.15□□□□□ -0.94
CD47-201ENST00000355354 SAMD9LQ8IVG5 1584 aa9.14□□□□□ -0.95
CD47-201ENST00000355354 STRCP1A6NGW2 1772 aa9.14□□□□□ -0.95
CD47-201ENST00000355354 POLR1AO95602 1720 aaPredicted RBP9.13□□□□□ -0.95
CD47-201ENST00000355354 CARMIL2Q6F5E8 1435 aa9.13□□□□□ -0.95
CD47-201ENST00000355354 MROH1Q8NDA8 1641 aa9.13□□□□□ -0.95
CD47-201ENST00000355354 YTHDC1Q96MU7 727 aaKnown RBP9.13□□□□□ -0.95
CD47-201ENST00000355354 EYSQ5T1H1 3165 aa9.13□□□□□ -0.95
CD47-201ENST00000355354 TRIM26Q12899 539 aaPredicted RBP9.12□□□□□ -0.95
CD47-201ENST00000355354 LTBP4Q8N2S1 1624 aa9.12□□□□□ -0.95
CD47-201ENST00000355354 ZC3H13Q5T200 1668 aaKnown RBP9.12□□□□□ -0.95
CD47-201ENST00000355354 ARHGAP35Q9NRY4 1499 aa9.12□□□□□ -0.95
CD47-201ENST00000355354 MIER1Q8N108 512 aa9.11□□□□□ -0.95
CD47-201ENST00000355354 MAGI2Q86UL8 1455 aa9.11□□□□□ -0.95
CD47-201ENST00000355354 KDM5AP29375 1690 aaKnown RBP9.11□□□□□ -0.95
CD47-201ENST00000355354 DEPDC5O75140 1603 aa9.11□□□□□ -0.95
CD47-201ENST00000355354 RNF17Q9BXT8 1623 aaKnown RBP9.1□□□□□ -0.95
CD47-201ENST00000355354 PHLDB1Q86UU1 1377 aa9.1□□□□□ -0.95
CD47-201ENST00000355354 PTPRMP28827 1452 aa9.1□□□□□ -0.95
CD47-201ENST00000355354 MYO3AQ8NEV4 1616 aa9.1□□□□□ -0.95
CD47-201ENST00000355354 EEA1Q15075 1411 aa9.09□□□□□ -0.95
CD47-201ENST00000355354 RANBP2P49792 3224 aaKnown RBP9.08□□□□□ -0.96
CD47-201ENST00000355354 HNRNPUL2Q1KMD3 747 aaKnown RBP9.07□□□□□ -0.96
CD47-201ENST00000355354 GTF3C3Q9Y5Q9 886 aa9.07□□□□□ -0.96
CD47-201ENST00000355354 NEURL4Q96JN8 1562 aa9.07□□□□□ -0.96
CD47-201ENST00000355354 KANK4Q5T7N3 995 aaPredicted RBP9.06□□□□□ -0.96
CD47-201ENST00000355354 POGZQ7Z3K3 1410 aa9.06□□□□□ -0.96
CD47-201ENST00000355354 MAST1Q9Y2H9 1570 aa9.06□□□□□ -0.96
CD47-201ENST00000355354 CAMSAP2Q08AD1 1489 aa9.06□□□□□ -0.96
CD47-201ENST00000355354 CDK13Q14004 1512 aaKnown RBP9.06□□□□□ -0.96
CD47-201ENST00000355354 TIAM1Q13009 1591 aa9.05□□□□□ -0.96
CD47-201ENST00000355354 FAM135AQ9P2D6 1515 aa9.05□□□□□ -0.96
CD47-201ENST00000355354 ZFYVE16Q7Z3T8 1539 aa9.05□□□□□ -0.96
CD47-201ENST00000355354 FBLN2P98095 1184 aa9.05□□□□□ -0.96
CD47-201ENST00000355354 SZT2Q5T011 3432 aa9.04□□□□□ -0.96
CD47-201ENST00000355354 MLH3Q9UHC1 1453 aa9.03□□□□□ -0.96
CD47-201ENST00000355354 CD109Q6YHK3 1445 aa9.03□□□□□ -0.96
CD47-201ENST00000355354 EIF2AK4Q9P2K8 1649 aaKnown RBP9.02□□□□□ -0.97
CD47-201ENST00000355354 PLCH2O75038 1416 aa9.01□□□□□ -0.97
CD47-201ENST00000355354 CLTCQ00610 1675 aaKnown RBP9□□□□□ -0.97
CD47-201ENST00000355354 IQSEC2Q5JU85 1478 aa9□□□□□ -0.97
CD47-201ENST00000355354 VWDEQ8N2E2 1590 aa9□□□□□ -0.97
CD47-201ENST00000355354 FAM69CQ0P6D2 419 aa8.99□□□□□ -0.97
CD47-201ENST00000355354 SETD1BQ9UPS6 1966 aaKnown RBP8.98□□□□□ -0.97
CD47-201ENST00000355354 SUPT6HQ7KZ85 1726 aaKnown RBP8.98□□□□□ -0.97
CD47-201ENST00000355354 CEP170BQ9Y4F5 1589 aaPredicted RBP8.98□□□□□ -0.97
CD47-201ENST00000355354 VPS13AQ96RL7 3174 aa8.98□□□□□ -0.97
CD47-201ENST00000355354 ARHGEF5Q12774 1597 aa8.98□□□□□ -0.97
CD47-201ENST00000355354 YEATS2Q9ULM3 1422 aa8.97□□□□□ -0.97
CD47-201ENST00000355354 FYCO1Q9BQS8 1478 aa8.97□□□□□ -0.97
CD47-201ENST00000355354 UBR1Q8IWV7 1749 aa8.96□□□□□ -0.97
CD47-201ENST00000355354 FANCAO15360 1455 aa8.96□□□□□ -0.98
CD47-201ENST00000355354 MBD5Q9P267 1494 aa8.95□□□□□ -0.98
CD47-201ENST00000355354 DNMT1P26358 1616 aaKnown RBP8.95□□□□□ -0.98
CD47-201ENST00000355354 KDM5DQ9BY66 1539 aa8.95□□□□□ -0.98
CD47-201ENST00000355354 PRUNE2Q8WUY3 3088 aa8.95□□□□□ -0.98
CD47-201ENST00000355354 CFAP54Q96N23 3096 aa8.95□□□□□ -0.98
CD47-201ENST00000355354 AKNAQ7Z591 1439 aa8.95□□□□□ -0.98
CD47-201ENST00000355354 PIK3C2BO00750 1634 aa8.94□□□□□ -0.98
CD47-201ENST00000355354 TCOF1Q13428 1488 aaKnown RBP8.94□□□□□ -0.98
CD47-201ENST00000355354 CASKIN1Q8WXD9 1431 aa8.93□□□□□ -0.98
CD47-201ENST00000355354 SETD1AO15047 1707 aaKnown RBP8.93□□□□□ -0.98
CD47-201ENST00000355354 TRHP20396 242 aaPredicted RBP8.92□□□□□ -0.98
CD47-201ENST00000355354 MAP3K1Q13233 1512 aa8.92□□□□□ -0.98
CD47-201ENST00000355354 CCDC184Q52MB2 194 aa8.91□□□□□ -0.98
CD47-201ENST00000355354 CCDC18Q5T9S5 1454 aa8.9□□□□□ -0.98
CD47-201ENST00000355354 ZNF518AQ6AHZ1 1483 aa8.9□□□□□ -0.98
CD47-201ENST00000355354 C9orf84Q5VXU9 1444 aa8.9□□□□□ -0.98
CD47-201ENST00000355354 SPATA31D1Q6ZQQ2 1576 aa8.9□□□□□ -0.99
CD47-201ENST00000355354 LAMC1P11047 1609 aa8.9□□□□□ -0.99
CD47-201ENST00000355354 CEP152O94986 1710 aa8.89□□□□□ -0.99
CD47-201ENST00000355354 ATP10AO60312 1499 aa8.89□□□□□ -0.99
CD47-201ENST00000355354 MYO5BQ9ULV0 1848 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms