RNA–Protein interactions for RNA: ENST00000354828.7

GABPA-201, Transcript of GA binding protein transcription factor subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABPA, Length 5,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPA-201ENST00000354828 CCDC18Q5T9S5 1454 aa12.91□□□□□ -0.34
GABPA-201ENST00000354828 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.9□□□□□ -0.34
GABPA-201ENST00000354828 FOXD1Q16676 465 aa12.9□□□□□ -0.34
GABPA-201ENST00000354828 MAPK8IP3Q9UPT6 1336 aa12.89□□□□□ -0.35
GABPA-201ENST00000354828 TMF1P82094 1093 aa12.88□□□□□ -0.35
GABPA-201ENST00000354828 PEG3Q9GZU2 1588 aa12.88□□□□□ -0.35
GABPA-201ENST00000354828 CSB-PGBD3P0DP91 1061 aa12.87□□□□□ -0.35
GABPA-201ENST00000354828 NEUROD2Q15784 382 aa12.87□□□□□ -0.35
GABPA-201ENST00000354828 U2SURPO15042 1029 aaKnown RBP12.87□□□□□ -0.35
GABPA-201ENST00000354828 LAS1LQ9Y4W2 734 aaKnown RBP12.87□□□□□ -0.35
GABPA-201ENST00000354828 CUX1P39880 1505 aa12.86□□□□□ -0.35
GABPA-201ENST00000354828 MYH16Q9H6N6 1097 aa12.85□□□□□ -0.35
GABPA-201ENST00000354828 SYNJ1O43426 1573 aa12.85□□□□□ -0.35
GABPA-201ENST00000354828 DNMBPQ6XZF7 1577 aa12.85□□□□□ -0.35
GABPA-201ENST00000354828 HDGFL2Q7Z4V5 671 aaPredicted RBP12.84□□□□□ -0.35
GABPA-201ENST00000354828 RTL5Q5HYW3 569 aaPredicted RBP12.84□□□□□ -0.35
GABPA-201ENST00000354828 CC2D1BQ5T0F9 858 aaKnown RBP12.83□□□□□ -0.35
GABPA-201ENST00000354828 SENP3-EIF4A1A0A087X0R7 540 aa12.82□□□□□ -0.36
GABPA-201ENST00000354828 NUTM2FA1L443 756 aa12.82□□□□□ -0.36
GABPA-201ENST00000354828 MPHOSPH9Q99550 1183 aa12.82□□□□□ -0.36
GABPA-201ENST00000354828 NGDNQ8NEJ9 315 aaKnown RBP12.81□□□□□ -0.36
GABPA-201ENST00000354828 SETD5Q9C0A6 1442 aa12.81□□□□□ -0.36
GABPA-201ENST00000354828 TOP2BQ02880 1626 aa12.8□□□□□ -0.36
GABPA-201ENST00000354828 SNAPC4Q5SXM2 1469 aa12.79□□□□□ -0.36
GABPA-201ENST00000354828 MORC1Q86VD1 984 aa12.79□□□□□ -0.36
GABPA-201ENST00000354828 PRG4Q92954 1404 aaPredicted RBP12.78□□□□□ -0.36
GABPA-201ENST00000354828 GTF3C3Q9Y5Q9 886 aa12.77□□□□□ -0.37
GABPA-201ENST00000354828 HSP90AA1P07900 732 aaKnown RBP12.77□□□□□ -0.37
GABPA-201ENST00000354828 PNNQ9H307 717 aaKnown RBP12.76□□□□□ -0.37
GABPA-201ENST00000354828 UPF2Q9HAU5 1272 aaKnown RBP12.76□□□□□ -0.37
GABPA-201ENST00000354828 FKBP8Q14318 412 aa12.74□□□□□ -0.37
GABPA-201ENST00000354828 ROCK2O75116 1388 aaKnown RBP12.73□□□□□ -0.37
GABPA-201ENST00000354828 ABCA10Q8WWZ4 1543 aa12.73□□□□□ -0.37
GABPA-201ENST00000354828 RTF1Q92541 710 aaKnown RBP12.72□□□□□ -0.37
GABPA-201ENST00000354828 URB2Q14146 1524 aaKnown RBP12.72□□□□□ -0.37
GABPA-201ENST00000354828 CCDC136Q96JN2 1154 aa12.71□□□□□ -0.37
GABPA-201ENST00000354828 TRAK1Q9UPV9 953 aa12.71□□□□□ -0.37
GABPA-201ENST00000354828 VGFO15240 615 aaPredicted RBP12.71□□□□□ -0.38
GABPA-201ENST00000354828 ZNF330Q9Y3S2 320 aaPredicted RBP12.7□□□□□ -0.38
GABPA-201ENST00000354828 PRXQ9BXM0 1461 aa12.7□□□□□ -0.38
GABPA-201ENST00000354828 MEX3CQ5U5Q3 659 aaKnown RBP12.7□□□□□ -0.38
GABPA-201ENST00000354828 TERF2IPQ9NYB0 399 aa12.7□□□□□ -0.38
GABPA-201ENST00000354828 ERICH3Q5RHP9 1530 aa12.7□□□□□ -0.38
GABPA-201ENST00000354828 FTSJ3Q8IY81 847 aaKnown RBP12.69□□□□□ -0.38
GABPA-201ENST00000354828 EIF3AQ14152 1382 aaKnown RBP12.69□□□□□ -0.38
GABPA-201ENST00000354828 RAB3GAP2Q9H2M9 1393 aa12.68□□□□□ -0.38
GABPA-201ENST00000354828 TIMELESSQ9UNS1 1208 aa12.67□□□□□ -0.38
GABPA-201ENST00000354828 PRDM2Q13029 1718 aa12.67□□□□□ -0.38
GABPA-201ENST00000354828 AFAP1Q8N556 730 aa12.67□□□□□ -0.38
GABPA-201ENST00000354828 LTV1Q96GA3 475 aaPredicted RBP12.67□□□□□ -0.38
GABPA-201ENST00000354828 ANP32AP39687 249 aaKnown RBP12.66□□□□□ -0.38
GABPA-201ENST00000354828 AMPHP49418 695 aa12.66□□□□□ -0.38
GABPA-201ENST00000354828 MIER1Q8N108 512 aa12.66□□□□□ -0.38
GABPA-201ENST00000354828 SYNJ2O15056 1496 aa12.65□□□□□ -0.38
GABPA-201ENST00000354828 EVA1CP58658 441 aa12.65□□□□□ -0.38
GABPA-201ENST00000354828 GOLGA2Q08379 1002 aa12.65□□□□□ -0.38
GABPA-201ENST00000354828 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.65□□□□□ -0.38
GABPA-201ENST00000354828 KIAA0586Q9BVV6 1533 aa12.65□□□□□ -0.38
GABPA-201ENST00000354828 HSPA5P11021 654 aaKnown RBP12.65□□□□□ -0.38
GABPA-201ENST00000354828 CCDC144AA2RUR9 1427 aa12.65□□□□□ -0.39
GABPA-201ENST00000354828 KIF21BO75037 1637 aa12.64□□□□□ -0.39
GABPA-201ENST00000354828 ZNF608Q9ULD9 1512 aaPredicted RBP12.64□□□□□ -0.39
GABPA-201ENST00000354828 MAGI1Q96QZ7 1491 aaPredicted RBP12.64□□□□□ -0.39
GABPA-201ENST00000354828 OS9Q13438 667 aaPredicted RBP12.64□□□□□ -0.39
GABPA-201ENST00000354828 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.64□□□□□ -0.39
GABPA-201ENST00000354828 ATF3P18847 181 aa12.64□□□□□ -0.39
GABPA-201ENST00000354828 ZNF644Q9H582 1327 aaPredicted RBP12.63□□□□□ -0.39
GABPA-201ENST00000354828 FRAT1Q92837 279 aaPredicted RBP12.63□□□□□ -0.39
GABPA-201ENST00000354828 IRX6P78412 446 aaPredicted RBP12.63□□□□□ -0.39
GABPA-201ENST00000354828 CASKIN1Q8WXD9 1431 aa12.63□□□□□ -0.39
GABPA-201ENST00000354828 U2AF1L5P0DN76 240 aaPredicted RBP12.62□□□□□ -0.39
GABPA-201ENST00000354828 U2AF1Q01081 240 aaKnown RBP eCLIP12.62□□□□□ -0.39
GABPA-201ENST00000354828 L3MBTL2Q969R5 705 aa12.62□□□□□ -0.39
GABPA-201ENST00000354828 UACAQ9BZF9 1416 aa12.61□□□□□ -0.39
GABPA-201ENST00000354828 PHF23Q9BUL5 403 aaPredicted RBP12.61□□□□□ -0.39
GABPA-201ENST00000354828 MINK1Q8N4C8 1332 aaPredicted RBP12.6□□□□□ -0.39
GABPA-201ENST00000354828 PSME1Q06323 249 aa12.6□□□□□ -0.39
GABPA-201ENST00000354828 RAPGEF3O95398 923 aa12.59□□□□□ -0.39
GABPA-201ENST00000354828 TMX4Q9H1E5 349 aaPredicted RBP12.59□□□□□ -0.39
GABPA-201ENST00000354828 ARHGAP5Q13017 1502 aa12.59□□□□□ -0.39
GABPA-201ENST00000354828 GRIN2AQ12879 1464 aa12.59□□□□□ -0.39
GABPA-201ENST00000354828 ARAP1Q96P48 1450 aa12.58□□□□□ -0.39
GABPA-201ENST00000354828 MYOM3Q5VTT5 1437 aa12.58□□□□□ -0.4
GABPA-201ENST00000354828 EFCAB5A4FU69 1503 aa12.58□□□□□ -0.4
GABPA-201ENST00000354828 KIF15Q9NS87 1388 aa12.57□□□□□ -0.4
GABPA-201ENST00000354828 KTN1Q86UP2 1357 aaKnown RBP12.57□□□□□ -0.4
GABPA-201ENST00000354828 TXNDC2Q86VQ3 553 aa12.57□□□□□ -0.4
GABPA-201ENST00000354828 PROSER2Q86WR7 435 aaPredicted RBP12.55□□□□□ -0.4
GABPA-201ENST00000354828 MSH5O43196 834 aa12.55□□□□□ -0.4
GABPA-201ENST00000354828 CHMP4BQ9H444 224 aaKnown RBP12.55□□□□□ -0.4
GABPA-201ENST00000354828 FYCO1Q9BQS8 1478 aa12.54□□□□□ -0.4
GABPA-201ENST00000354828 EVC2Q86UK5 1308 aa12.54□□□□□ -0.4
GABPA-201ENST00000354828 THEMISQ8N1K5 641 aaPredicted RBP12.54□□□□□ -0.4
GABPA-201ENST00000354828 LRRC9Q6ZRR7 1453 aa12.54□□□□□ -0.4
GABPA-201ENST00000354828 COG3Q96JB2 828 aa12.53□□□□□ -0.4
GABPA-201ENST00000354828 IQGAP2Q13576 1575 aa12.53□□□□□ -0.4
GABPA-201ENST00000354828 FGD6Q6ZV73 1430 aa12.53□□□□□ -0.4
GABPA-201ENST00000354828 MS4A1P11836 297 aa12.53□□□□□ -0.4
GABPA-201ENST00000354828 POGZQ7Z3K3 1410 aa12.53□□□□□ -0.4
GABPA-201ENST00000354828 CALD1Q05682 793 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms