RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 MAGI1Q96QZ7 1491 aaPredicted RBP19.61■□□□□ 0.73
TRIM4-201ENST00000349062 L3MBTL2Q969R5 705 aa19.61■□□□□ 0.73
TRIM4-201ENST00000349062 MYT1LQ9UL68 1186 aa19.6■□□□□ 0.73
TRIM4-201ENST00000349062 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.59■□□□□ 0.73
TRIM4-201ENST00000349062 PTPRGP23470 1445 aa19.59■□□□□ 0.73
TRIM4-201ENST00000349062 KDM2AQ9Y2K7 1162 aa19.58■□□□□ 0.73
TRIM4-201ENST00000349062 TSPY4P0CV99 314 aa19.58■□□□□ 0.72
TRIM4-201ENST00000349062 TSPY10P0CW01 314 aa19.58■□□□□ 0.72
TRIM4-201ENST00000349062 ANP32CO43423 234 aa19.55■□□□□ 0.72
TRIM4-201ENST00000349062 KDM6BO15054 1643 aa19.54■□□□□ 0.72
TRIM4-201ENST00000349062 RAPGEF6Q8TEU7 1601 aa19.54■□□□□ 0.72
TRIM4-201ENST00000349062 PKD2Q13563 968 aa19.53■□□□□ 0.72
TRIM4-201ENST00000349062 HSPA5P11021 654 aaKnown RBP19.53■□□□□ 0.72
TRIM4-201ENST00000349062 ABCC5O15440 1437 aa19.52■□□□□ 0.72
TRIM4-201ENST00000349062 DAPK1P53355 1430 aa19.52■□□□□ 0.72
TRIM4-201ENST00000349062 TROQ12816 1431 aaPredicted RBP19.52■□□□□ 0.72
TRIM4-201ENST00000349062 SENP3-EIF4A1A0A087X0R7 540 aa19.51■□□□□ 0.71
TRIM4-201ENST00000349062 BCANQ96GW7 911 aa19.5■□□□□ 0.71
TRIM4-201ENST00000349062 ARHGEF11O15085 1522 aa19.49■□□□□ 0.71
TRIM4-201ENST00000349062 MIA2Q96PC5 1412 aa19.48■□□□□ 0.71
TRIM4-201ENST00000349062 RGL3Q3MIN7 710 aa19.48■□□□□ 0.71
TRIM4-201ENST00000349062 TIMELESSQ9UNS1 1208 aa19.47■□□□□ 0.71
TRIM4-201ENST00000349062 KIF14Q15058 1648 aa19.46■□□□□ 0.71
TRIM4-201ENST00000349062 NUP160Q12769 1436 aa19.46■□□□□ 0.71
TRIM4-201ENST00000349062 EIF4G2P78344 907 aaKnown RBP eCLIP19.46■□□□□ 0.71
TRIM4-201ENST00000349062 ATP10BO94823 1461 aa19.45■□□□□ 0.7
TRIM4-201ENST00000349062 NBPF8Q3BBV2 869 aa19.44■□□□□ 0.7
TRIM4-201ENST00000349062 NUP155O75694 1391 aa19.44■□□□□ 0.7
TRIM4-201ENST00000349062 GPATCH8Q9UKJ3 1502 aaKnown RBP19.43■□□□□ 0.7
TRIM4-201ENST00000349062 CAMSAP2Q08AD1 1489 aa19.43■□□□□ 0.7
TRIM4-201ENST00000349062 TCOF1Q13428 1488 aaKnown RBP19.4■□□□□ 0.7
TRIM4-201ENST00000349062 ANKRD30AQ9BXX3 1397 aa19.39■□□□□ 0.69
TRIM4-201ENST00000349062 SUPT16HQ9Y5B9 1047 aaKnown RBP19.38■□□□□ 0.69
TRIM4-201ENST00000349062 C11orf95C9JLR9 678 aaPredicted RBP19.37■□□□□ 0.69
TRIM4-201ENST00000349062 DCAF11Q8TEB1 546 aa19.35■□□□□ 0.69
TRIM4-201ENST00000349062 NCOA1Q15788 1441 aa19.34■□□□□ 0.69
TRIM4-201ENST00000349062 ERCC6L2Q5T890 1561 aa19.34■□□□□ 0.69
TRIM4-201ENST00000349062 WASHC2AQ641Q2 1341 aa19.34■□□□□ 0.69
TRIM4-201ENST00000349062 DENND4BO75064 1496 aaPredicted RBP19.34■□□□□ 0.69
TRIM4-201ENST00000349062 ANKRD50Q9ULJ7 1429 aa19.34■□□□□ 0.69
TRIM4-201ENST00000349062 FAM9BQ8IZU0 186 aa19.33■□□□□ 0.69
TRIM4-201ENST00000349062 AKNAQ7Z591 1439 aa19.32■□□□□ 0.68
TRIM4-201ENST00000349062 KIF15Q9NS87 1388 aa19.31■□□□□ 0.68
TRIM4-201ENST00000349062 HNRNPUQ00839 825 aaKnown RBP eCLIP19.31■□□□□ 0.68
TRIM4-201ENST00000349062 ANKRD30BQ9BXX2 1392 aa19.31■□□□□ 0.68
TRIM4-201ENST00000349062 SENP3Q9H4L4 574 aaPredicted RBP19.3■□□□□ 0.68
TRIM4-201ENST00000349062 C9orf84Q5VXU9 1444 aa19.3■□□□□ 0.68
TRIM4-201ENST00000349062 CHD1O14646 1710 aa19.28■□□□□ 0.68
TRIM4-201ENST00000349062 AFAP1Q8N556 730 aa19.27■□□□□ 0.68
TRIM4-201ENST00000349062 ROCK1Q13464 1354 aa19.27■□□□□ 0.68
TRIM4-201ENST00000349062 CCDC184Q52MB2 194 aa19.26■□□□□ 0.67
TRIM4-201ENST00000349062 CARD11Q9BXL7 1154 aa19.26■□□□□ 0.67
TRIM4-201ENST00000349062 DNMT1P26358 1616 aaKnown RBP19.25■□□□□ 0.67
TRIM4-201ENST00000349062 IRX6P78412 446 aaPredicted RBP19.25■□□□□ 0.67
TRIM4-201ENST00000349062 FKBP8Q14318 412 aa19.25■□□□□ 0.67
TRIM4-201ENST00000349062 ARHGAP5Q13017 1502 aa19.24■□□□□ 0.67
TRIM4-201ENST00000349062 TSHZ2Q9NRE2 1034 aa19.22■□□□□ 0.67
TRIM4-201ENST00000349062 ABCA8O94911 1581 aa19.21■□□□□ 0.67
TRIM4-201ENST00000349062 GCC2Q8IWJ2 1684 aa19.21■□□□□ 0.67
TRIM4-201ENST00000349062 MRS2Q9HD23 443 aa19.21■□□□□ 0.67
TRIM4-201ENST00000349062 EFCAB2Q5VUJ9 269 aa19.19■□□□□ 0.66
TRIM4-201ENST00000349062 PZPP20742 1482 aa19.19■□□□□ 0.66
TRIM4-201ENST00000349062 KIAA1107Q9UPP5 1409 aa19.17■□□□□ 0.66
TRIM4-201ENST00000349062 KIF7Q2M1P5 1343 aa19.16■□□□□ 0.66
TRIM4-201ENST00000349062 ABCC10Q5T3U5 1492 aa19.16■□□□□ 0.66
TRIM4-201ENST00000349062 RPRD2Q5VT52 1461 aaKnown RBP19.16■□□□□ 0.66
TRIM4-201ENST00000349062 NEFLP07196 543 aa19.15■□□□□ 0.66
TRIM4-201ENST00000349062 ST20-MTHFSA0A0A6YYL1 179 aa19.15■□□□□ 0.66
TRIM4-201ENST00000349062 NPM1P06748 294 aaKnown RBP eCLIP19.15■□□□□ 0.66
TRIM4-201ENST00000349062 ITSN2Q9NZM3 1697 aa19.14■□□□□ 0.66
TRIM4-201ENST00000349062 ANP32EQ9BTT0 268 aa19.13■□□□□ 0.65
TRIM4-201ENST00000349062 KDM5BQ9UGL1 1544 aa19.13■□□□□ 0.65
TRIM4-201ENST00000349062 CDC42BPAQ5VT25 1732 aa19.13■□□□□ 0.65
TRIM4-201ENST00000349062 SALL2Q9Y467 1007 aaPredicted RBP19.13■□□□□ 0.65
TRIM4-201ENST00000349062 SYCP2Q9BX26 1530 aa19.12■□□□□ 0.65
TRIM4-201ENST00000349062 CHGAP10645 457 aaKnown RBP19.12■□□□□ 0.65
TRIM4-201ENST00000349062 USP47Q96K76 1375 aa19.12■□□□□ 0.65
TRIM4-201ENST00000349062 CCDC7Q96M83 1385 aa19.12■□□□□ 0.65
TRIM4-201ENST00000349062 NBPF1Q3BBV0 1214 aa19.12■□□□□ 0.65
TRIM4-201ENST00000349062 SPAG9O60271 1321 aaKnown RBP19.11■□□□□ 0.65
TRIM4-201ENST00000349062 CCER2I3L3R5 266 aa19.11■□□□□ 0.65
TRIM4-201ENST00000349062 KIF3BO15066 747 aa19.1■□□□□ 0.65
TRIM4-201ENST00000349062 CCDC141Q6ZP82 1450 aa19.08■□□□□ 0.65
TRIM4-201ENST00000349062 PLEKHH2Q8IVE3 1493 aa19.08■□□□□ 0.65
TRIM4-201ENST00000349062 PRKRIP1Q9H875 184 aaPredicted RBP19.07■□□□□ 0.64
TRIM4-201ENST00000349062 OSCARQ8IYS5 282 aa19.07■□□□□ 0.64
TRIM4-201ENST00000349062 TTC37Q6PGP7 1564 aa19.06■□□□□ 0.64
TRIM4-201ENST00000349062 MBD5Q9P267 1494 aa19.06■□□□□ 0.64
TRIM4-201ENST00000349062 TEX14Q8IWB6 1497 aa19.05■□□□□ 0.64
TRIM4-201ENST00000349062 ROCK2O75116 1388 aaKnown RBP19.05■□□□□ 0.64
TRIM4-201ENST00000349062 RSPH4AQ5TD94 716 aa19.05■□□□□ 0.64
TRIM4-201ENST00000349062 CCDC144AA2RUR9 1427 aa19.04■□□□□ 0.64
TRIM4-201ENST00000349062 SAMD9LQ8IVG5 1584 aa19.03■□□□□ 0.64
TRIM4-201ENST00000349062 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.03■□□□□ 0.64
TRIM4-201ENST00000349062 TRAPPC8Q9Y2L5 1435 aa19.03■□□□□ 0.64
TRIM4-201ENST00000349062 GGT6Q6P531 493 aa19.02■□□□□ 0.64
TRIM4-201ENST00000349062 ABCC2Q92887 1545 aa19.01■□□□□ 0.63
TRIM4-201ENST00000349062 CYB5RLQ6IPT4 315 aa19.01■□□□□ 0.63
TRIM4-201ENST00000349062 BCL11AQ9H165 835 aa19■□□□□ 0.63
TRIM4-201ENST00000349062 ADGRL2O95490 1459 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms