RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 NISCHQ9Y2I1 1504 aa28.95■■■□□ 2.23
TRIM4-201ENST00000349062 DCAF8L2P0C7V8 631 aa25.37■■□□□ 1.65
TRIM4-201ENST00000349062 SHROOM4Q9ULL8 1493 aa25.36■■□□□ 1.65
TRIM4-201ENST00000349062 SUPT5HO00267 1087 aaKnown RBP24.74■■□□□ 1.55
TRIM4-201ENST00000349062 CCDC180Q9P1Z9 1646 aa24.4■■□□□ 1.5
TRIM4-201ENST00000349062 ZCCHC6Q5VYS8 1495 aaKnown RBP24.31■■□□□ 1.48
TRIM4-201ENST00000349062 ABCC9O60706 1549 aa23.85■■□□□ 1.41
TRIM4-201ENST00000349062 SCRIBQ14160 1630 aa23.47■■□□□ 1.35
TRIM4-201ENST00000349062 CHIC1Q5VXU3 224 aa23.39■■□□□ 1.33
TRIM4-201ENST00000349062 DCAF1Q9Y4B6 1507 aa23.33■■□□□ 1.33
TRIM4-201ENST00000349062 EHMT2Q96KQ7 1210 aa23.2■■□□□ 1.3
TRIM4-201ENST00000349062 MYO15BQ96JP2 1530 aa23.08■■□□□ 1.28
TRIM4-201ENST00000349062 LOC105371045A0A1W2PR82 267 aa23.04■■□□□ 1.28
TRIM4-201ENST00000349062 FAM9AQ8IZU1 332 aaPredicted RBP23.04■■□□□ 1.28
TRIM4-201ENST00000349062 PABPN1Q86U42 306 aaKnown RBP eCLIP23.01■■□□□ 1.27
TRIM4-201ENST00000349062 RSF1Q96T23 1441 aaPredicted RBP22.92■■□□□ 1.26
TRIM4-201ENST00000349062 CECR2Q9BXF3 1484 aa22.91■■□□□ 1.26
TRIM4-201ENST00000349062 NACADO15069 1562 aa22.87■■□□□ 1.25
TRIM4-201ENST00000349062 TRIM41Q8WV44 630 aa22.83■■□□□ 1.25
TRIM4-201ENST00000349062 RB1CC1Q8TDY2 1594 aa22.7■■□□□ 1.22
TRIM4-201ENST00000349062 PCGF6Q9BYE7 350 aa22.66■■□□□ 1.22
TRIM4-201ENST00000349062 MROH2BQ7Z745 1585 aa22.66■■□□□ 1.22
TRIM4-201ENST00000349062 WIZO95785 1651 aa22.5■■□□□ 1.19
TRIM4-201ENST00000349062 PPARGC1BQ86YN6 1023 aaKnown RBP22.38■■□□□ 1.17
TRIM4-201ENST00000349062 TTBK1Q5TCY1 1321 aaPredicted RBP22.26■■□□□ 1.15
TRIM4-201ENST00000349062 BAZ1AQ9NRL2 1556 aaPredicted RBP22.25■■□□□ 1.15
TRIM4-201ENST00000349062 UNC13AQ9UPW8 1703 aa22.2■■□□□ 1.14
TRIM4-201ENST00000349062 HRCP23327 699 aa22.16■■□□□ 1.14
TRIM4-201ENST00000349062 SMARCA4P51532 1647 aa22.09■■□□□ 1.13
TRIM4-201ENST00000349062 RANGAP1P46060 587 aaPredicted RBP22.08■■□□□ 1.13
TRIM4-201ENST00000349062 CCDC88BA6NC98 1476 aa22.08■■□□□ 1.12
TRIM4-201ENST00000349062 ABCC8Q09428 1581 aa22.05■■□□□ 1.12
TRIM4-201ENST00000349062 BICRAQ9NZM4 1560 aa22.03■■□□□ 1.12
TRIM4-201ENST00000349062 UBTFP17480 764 aaKnown RBP21.96■■□□□ 1.11
TRIM4-201ENST00000349062 TRIM26Q12899 539 aaPredicted RBP21.94■■□□□ 1.1
TRIM4-201ENST00000349062 TOP2AP11388 1531 aaKnown RBP21.94■■□□□ 1.1
TRIM4-201ENST00000349062 SMARCA2P51531 1590 aa21.86■■□□□ 1.09
TRIM4-201ENST00000349062 SOGA1O94964 1423 aa21.82■■□□□ 1.08
TRIM4-201ENST00000349062 BAZ1BQ9UIG0 1483 aaKnown RBP21.79■■□□□ 1.08
TRIM4-201ENST00000349062 ATAD2BQ9ULI0 1458 aa21.76■■□□□ 1.07
TRIM4-201ENST00000349062 RUSC2Q8N2Y8 1516 aa21.73■■□□□ 1.07
TRIM4-201ENST00000349062 CSRNP3Q8WYN3 585 aa21.71■■□□□ 1.07
TRIM4-201ENST00000349062 WRNQ14191 1432 aaPredicted RBP eCLIP21.64■■□□□ 1.06
TRIM4-201ENST00000349062 EIF4G1Q04637 1599 aaKnown RBP21.57■■□□□ 1.04
TRIM4-201ENST00000349062 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.52■■□□□ 1.04
TRIM4-201ENST00000349062 CEP162Q5TB80 1403 aa21.45■■□□□ 1.02
TRIM4-201ENST00000349062 CCER1Q8TC90 406 aaPredicted RBP21.4■■□□□ 1.02
TRIM4-201ENST00000349062 SYNJ1O43426 1573 aa21.4■■□□□ 1.02
TRIM4-201ENST00000349062 PEG3Q9GZU2 1588 aa21.37■■□□□ 1.01
TRIM4-201ENST00000349062 APLP2Q06481 763 aa21.35■■□□□ 1.01
TRIM4-201ENST00000349062 HNRNPUL2Q1KMD3 747 aaKnown RBP21.33■■□□□ 1
TRIM4-201ENST00000349062 TNIKQ9UKE5 1360 aa21.29■■□□□ 1
TRIM4-201ENST00000349062 GOLGA3Q08378 1498 aa21.27■□□□□ 0.99
TRIM4-201ENST00000349062 NCAPD3P42695 1498 aa21.26■□□□□ 0.99
TRIM4-201ENST00000349062 DNAJC5BQ9UF47 199 aa21.26■□□□□ 0.99
TRIM4-201ENST00000349062 ATP1B4Q9UN42 357 aaPredicted RBP21.22■□□□□ 0.99
TRIM4-201ENST00000349062 RAPGEF2Q9Y4G8 1499 aa21.22■□□□□ 0.99
TRIM4-201ENST00000349062 EEA1Q15075 1411 aa21.22■□□□□ 0.99
TRIM4-201ENST00000349062 CLIP1P30622 1438 aa21.19■□□□□ 0.98
TRIM4-201ENST00000349062 P3H3Q8IVL6 736 aa21.16■□□□□ 0.98
TRIM4-201ENST00000349062 CEP164Q9UPV0 1460 aa21.15■□□□□ 0.98
TRIM4-201ENST00000349062 ZEB1P37275 1124 aaPredicted RBP21.14■□□□□ 0.97
TRIM4-201ENST00000349062 CC2D2AQ9P2K1 1620 aa21.1■□□□□ 0.97
TRIM4-201ENST00000349062 ITGAEP38570 1179 aa21.1■□□□□ 0.97
TRIM4-201ENST00000349062 HMGXB3Q12766 1538 aa21.07■□□□□ 0.96
TRIM4-201ENST00000349062 CUX1P39880 1505 aa21.06■□□□□ 0.96
TRIM4-201ENST00000349062 CADPSQ9ULU8 1353 aa21.06■□□□□ 0.96
TRIM4-201ENST00000349062 CFTRP13569 1480 aa21.03■□□□□ 0.96
TRIM4-201ENST00000349062 NESP48681 1621 aa21.03■□□□□ 0.96
TRIM4-201ENST00000349062 CUX2O14529 1486 aa21.01■□□□□ 0.95
TRIM4-201ENST00000349062 KIF27Q86VH2 1401 aa21■□□□□ 0.95
TRIM4-201ENST00000349062 TOP2BQ02880 1626 aa21■□□□□ 0.95
TRIM4-201ENST00000349062 SCAF1Q9H7N4 1312 aaKnown RBP20.94■□□□□ 0.94
TRIM4-201ENST00000349062 KANK4Q5T7N3 995 aaPredicted RBP20.93■□□□□ 0.94
TRIM4-201ENST00000349062 PELP1Q8IZL8 1130 aaKnown RBP20.89■□□□□ 0.93
TRIM4-201ENST00000349062 FANCD2Q9BXW9 1451 aa20.88■□□□□ 0.93
TRIM4-201ENST00000349062 VPS8Q8N3P4 1428 aa20.87■□□□□ 0.93
TRIM4-201ENST00000349062 RAD54L2Q9Y4B4 1467 aa20.87■□□□□ 0.93
TRIM4-201ENST00000349062 FGD5Q6ZNL6 1462 aa20.86■□□□□ 0.93
TRIM4-201ENST00000349062 KIF21BO75037 1637 aa20.86■□□□□ 0.93
TRIM4-201ENST00000349062 CARMIL1Q5VZK9 1371 aa20.82■□□□□ 0.92
TRIM4-201ENST00000349062 IGF1RP08069 1367 aa20.81■□□□□ 0.92
TRIM4-201ENST00000349062 TDRD9Q8NDG6 1382 aaKnown RBP20.8■□□□□ 0.92
TRIM4-201ENST00000349062 BIVM-ERCC5R4GMW8 1640 aa20.8■□□□□ 0.92
TRIM4-201ENST00000349062 ARID3CA6NKF2 412 aa20.79■□□□□ 0.92
TRIM4-201ENST00000349062 PRXQ9BXM0 1461 aa20.78■□□□□ 0.92
TRIM4-201ENST00000349062 ARAP1Q96P48 1450 aa20.73■□□□□ 0.91
TRIM4-201ENST00000349062 FAM50AQ14320 339 aaKnown RBP20.71■□□□□ 0.91
TRIM4-201ENST00000349062 POLA1P09884 1462 aaPredicted RBP20.62■□□□□ 0.89
TRIM4-201ENST00000349062 TOPBP1Q92547 1522 aa20.61■□□□□ 0.89
TRIM4-201ENST00000349062 ARHGAP35Q9NRY4 1499 aa20.61■□□□□ 0.89
TRIM4-201ENST00000349062 DIEXFQ68CQ4 756 aaKnown RBP20.6■□□□□ 0.89
TRIM4-201ENST00000349062 ERICH3Q5RHP9 1530 aa20.59■□□□□ 0.89
TRIM4-201ENST00000349062 FBLN2P98095 1184 aa20.59■□□□□ 0.89
TRIM4-201ENST00000349062 FHOD3Q2V2M9 1422 aa20.57■□□□□ 0.88
TRIM4-201ENST00000349062 YTHDC1Q96MU7 727 aaKnown RBP20.54■□□□□ 0.88
TRIM4-201ENST00000349062 NEUROD1Q13562 356 aa20.53■□□□□ 0.88
TRIM4-201ENST00000349062 PDS5BQ9NTI5 1447 aa20.53■□□□□ 0.88
TRIM4-201ENST00000349062 URB2Q14146 1524 aaKnown RBP20.52■□□□□ 0.88
TRIM4-201ENST00000349062 GTF3C3Q9Y5Q9 886 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms